|
1.
|
|
|
2.
|
|
8 p, 1.0 MB |
pSBVB : A versatile simulation tool to evaluate genomic selection in polyploid species
/
Zingaretti, Laura M. (Centre de Recerca en Agrigenòmica) ;
Monfort Vives, Amparo (Centre de Recerca en Agrigenòmica) ;
Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
Genomic Selection (GS) is the procedure whereby molecular information is used to predict complex phenotypes and it is standard in many animal and plant breeding schemes. However, only a small number of studies have been reported in horticultural crops, and in polyploid species in particular. [...]
2019 -  10.1534/g3.118.200942
G3: Genes, genomes, genetics, Vol. 9, Issue 2 (February 2019) , p. 327-334
|
|
|
3.
|
|
13 p, 3.1 MB |
Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds
/
Naval-Sanchez, Marina (CSIRO. Agriculture and Food) ;
Nguyen, Quan (CSIRO. Agriculture and Food) ;
McWilliam, Sean (CSIRO. Agriculture and Food) ;
Porto-Neto, Laercio R. (CSIRO. Agriculture and Food) ;
Tellam, Ross (CSIRO. Agriculture and Food) ;
Vuocolo, Tony (CSIRO. Agriculture and Food) ;
Reverter, Antonio (CSIRO. Agriculture and Food) ;
Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Brauning, Rudiger (AgResearch Ltd. Invermay Agricultural Centre) ;
Clarke, Shannon (AgResearch Ltd. Invermay Agricultural Centre) ;
McCulloch, Alan (AgResearch Ltd. Invermay Agricultural Centre) ;
Zamani, Wahid (Tarbiat Modares University. Department of Environmental Sciences) ;
Naderi, Saeid (University of Guilan. Natural Resources Faculty) ;
Rezaei, Hamid Reza (Gorgan University of Agricultural Sciences and Natural Resources. Environmental Science Department) ;
Pompanon, Francois (Université Grenoble Alpes. Laboratoire d'Ecologie Alpine) ;
Taberlet, Pierre (Université Grenoble Alpes. Laboratoire d'Ecologie Alpine) ;
Worley, Kim C. (Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics) ;
Gibbs, Richard A. (Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics) ;
Muzny, Donna M. (Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics) ;
Jhangiani, Shalini N. (Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics) ;
Cockett, Noelle (Utah State University) ;
Daetwyler, Hans (La Trobe University. School of Applied Systems Biology) ;
Kijas, James (CSIRO. Agriculture and Food)
Domestication fundamentally reshaped animal morphology, physiology and behaviour, offering the opportunity to investigate the molecular processes driving evolutionary change. Here we assess sheep domestication and artificial selection by comparing genome sequence from 43 modern breeds (Ovis aries) and their Asian mouflon ancestor (O. [...]
2018 - 10.1038/s41467-017-02809-1
Nature communications, Vol. 9 Núm. 859 (2018)
|
|
|
4.
|
|
14 p, 2.2 MB |
A pathway-centered analysis of pig domestication and breeding in Eurasia
/
Leno-Colorado, Jordi (Centre de Recerca en Agrigenòmica) ;
Hudson, Nick J. (University of Queensland. School of Agriculture and Food Science) ;
Reverter, Antonio (Commonwealth Scientific and Industrial Research Organisation) ;
Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
Ascertaining the molecular and physiological basis of domestication and breeding is an active area of research. Due to the current wide distribution of its wild ancestor, the wild boar, the pig (Sus scrofa) is an excellent model to study these processes, which occurred independently in East Asia and Europe ca. [...]
2017 - 10.1534/g3.117.042671
G3: genes, genomics, genetics, Vol. 7 (July 2017) , p. 2171-2184
|
|
|
5.
|
|
6 p, 555.8 KB |
Recombination of the porcine X chromosome : a high density linkage map
/
Fernández Ávila, Ana Isabel (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria) ;
Muñoz, María (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria) ;
Alves, Estefânia (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria) ;
Folch Albareda, Josep Maria (Centre de Recerca en Agrigenòmica) ;
Noguera Jiménez, José Luis (Institut de Recerca i Tecnologia Agroalimentàries) ;
Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Rodríguez, Maria del Carmen (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria) ;
Silió, Luis (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria)
Linkage maps are essential tools for the study of several topics in genome biology. High density linkage maps for the porcine autosomes have been constructed exploiting the high density data provided by the PorcineSNP60 BeadChip. [...]
2014 - 10.1186/s12863-014-0148-x
BMC genetics, Vol. 15 (2014) , art. 148
|
|
|
6.
|
|
10 p, 752.3 KB |
Genome data from a sixteenth century pig illuminate modern breed relationships
/
Ramírez, Óscar (Consejo Superior de Investigaciones Científicas. Institut de Biologia Evolutiva) ;
Burgos-Paz, William (Centre de Recerca en Agrigenòmica) ;
Casas, E (Centre de Recerca en Agrigenòmica) ;
Ballester Devis, Maria (Centre de Recerca en Agrigenòmica) ;
Bianco, E. (Centre de Recerca en Agrigenòmica) ;
Olalde, Iñigo (Consejo Superior de Investigaciones Científicas. Institut de Biologia Evolutiva) ;
Santpere, G. (Consejo Superior de Investigaciones Científicas. Institut de Biologia Evolutiva) ;
Novella Dalmau, Violeta (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Gut, M. (Centre Nacional d'Anàlisi Genòmica) ;
Lalueza-Fox, Carles (Consejo Superior de Investigaciones Científicas. Institut de Biologia Evolutiva) ;
Saña Seguí, Maria (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
Ancient DNA (aDNA) provides direct evidence of historical events that have modeled the genome of modern individuals. In livestock, resolving the differences between the effects of initial domestication and of subsequent modern breeding is not straight forward without aDNA data. [...]
2014 - 10.1038/hdy.2014.81
Heredity, Vol. 114 (2015) , p. 175-184
|
|
|
7.
|
|
14 p, 1.6 MB |
Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs
/
Esteve Codina, Anna (Centre de Recerca en Agrigenòmica) ;
Paudel, Yogesh (Wageningen University. Animal Breeding and Genomics Centre) ;
Ferretti, Luca (Centre de Recerca en Agrigenòmica) ;
Raineri, Emanuele (Centre Nacional d'Anàlisi Genòmica) ;
Megens, Hendrik-Jan (Wageningen University. Animal Breeding and Genomics Centre) ;
Silió, Luis (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Departamento de Mejora Genética Animal) ;
Rodríguez, María C (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Departamento de Mejora Genética Animal) ;
Groenen, Martein AM (Wageningen University. Animal Breeding and Genomics Centre) ;
Ramos-Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica) ;
Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
In contrast to international pig breeds, the Iberian breed has not been admixed with Asian germplasm. This makes it an important model to study both domestication and relevance of Asian genes in the pig. [...]
2013 - 10.1186/1471-2164-14-148
BMC genomics, Vol. 14 (March 2013) , art. 148
|
|
|
8.
|
|
|
9.
|
|
10 p, 788.3 KB |
Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip
/
Ramayo Caldas, Yuliaxis (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Castelló, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Pena, Romi N ;
Alves, Estefania ;
Mercadé, Anna Maria (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Souza, Carla A ;
Fernández, Ana I ;
Perez-Enciso, Miguel ;
Folch, Josep Maria (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Recent studies in pigs have detected copy number variants (CNVs) using the Comparative Genomic Hybridization technique in arrays designed to cover specific porcine chromosomes. The goal of this study was to identify CNV regions (CNVRs) in swine species based on whole genome SNP genotyping chips. [...]
2010 - 10.1186/1471-2164-11-593
BMC genomics, Vol. 11 (10 2010) , p. 593
|
|
|
10.
|
|
guest ::
email alert
or subscribe to the 
RSS feed.
