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10 p, 1.2 MB |
Phenomes : the current frontier in animal breeding
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Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Steibel, Juan P. (Michigan State University. Department of Fisheries and Wildlife)
Improvements in genomic technologies have outpaced the most optimistic predictions, allowing industry-scale application of genomic selection. However, only marginal gains in genetic prediction accuracy can now be expected by increasing marker density up to sequence, unless causative mutations are identified. [...]
2021 -  10.1186/s12711-021-00618-1
Genetics, selection, evolution, Vol. 53 (March 2021) , art. 22
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1 p, 573.5 KB |
Correction to : Genome-wide SNP data unveils the globalization of domesticated pigs
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Yang, Bin (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Cui, Leilei (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Traspov, Aleksei (Federal Science Center for Animal Husbandry named after Academy Member L.K. Ernst) ;
Crooijmans, Richard (Wageningen University. Animal Breeding and Genomics) ;
Zinovieva, Natalia (Federal Science Center for Animal Husbandry named after Academy Member L.K. Ernst) ;
Schook, Lawrence B. (University of Illinois. Institute of Genomic Biology) ;
Archibald, Alan (University of Edinburgh. The Roslin Institute) ;
Gatphayak, Kesinee (Chiang Mai University. Animal and Aquatic Sciences) ;
Knorr, Christophe (University of Göttingen. Department of Animal Sciences) ;
Triantafyllidis, Alex (Aristotle University of Thessaloníki. Department of Genetics, Development and Molecular Biology) ;
Alexandri, Panoraia (Aristotle University of Thessaloníki. Department of Genetics, Development and Molecular Biology) ;
Semiadi, Gono (Lembaga Ilmu Pengetahuan Indonesia. Research Centre for Biology-Zoology Division) ;
Hanotte, Olivier (University of Nottingham. School of Biology) ;
Dias, Deodália (Universidade de Lisboa. Faculdade de Ciências) ;
Dovč, Peter (University of Ljubljana. Department of Animal Science) ;
Uimari, Pekka (University of Helsinki. Department of Agricultural Sciences) ;
Iacolina, Laura (University of Sassari. Department of Science for Nature and Environmental Resources) ;
Scandura, Massimo (University of Sassari. Department of Science for Nature and Environmental Resources) ;
Groenen, Martien A. M. (Wageningen University. Animal Breeding and Genomics) ;
Huang, Lusheng (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Megens, Hendrik-Jan (Wageningen University. Animal Breeding and Genomics)
2020 - 10.1186/s12711-020-00549-3
Genetics, selection, evolution, Vol. 52 (June 2020) . art. 30
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14 p, 2.1 MB |
kernInt : A Kernel Framework for Integrating Supervised and Unsupervised Analyses in Spatio-Temporal Metagenomic Datasets
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Ramon, Elies (Centre de Recerca en Agrigenòmica) ;
Belanche-Muñoz, Lluís (Universitat Politècnica de Catalunya. Departament d'Informàtica) ;
Molist, Francesc (Schothorst Feed Research) ;
Quintanilla, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries)
The advent of next-generation sequencing technologies allowed relative quantification of microbiome communities and their spatial and temporal variation. In recent years, supervised learning (i. e. , prediction of a phenotype of interest) from taxonomic abundances has become increasingly common in the microbiome field. [...]
2021 - 10.3389/fmicb.2021.609048
Frontiers in microbiology, Vol. 12 (January 2021) , art. 609048
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11 p, 1.4 MB |
Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions
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Ramírez-Ayala, Lino César (Centre de Recerca en Agrigenòmica) ;
Rocha, Dominique (Institut national de la recherche agronomique. Génétique Animale et Biologie Intégrative) ;
Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica) ;
Leno Colorado, Jordi (Centre de Recerca en Agrigenòmica) ;
Charles, Mathieu (Institut national de la recherche agronomique. Génétique Animale et Biologie Intégrative) ;
Bouchez, Olivier (Institut National de la Recherche Agronomique (França)) ;
Rodríguez Valera, Yoel (Universidad de Granma. Facultad de Ciencias Agropecuarias) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries)
In the early 20th century, Cuban farmers imported Charolais cattle (CHFR) directly from France. These animals are now known as Chacuba (CHCU) and have become adapted to the rough environmental tropical conditions in Cuba. [...]
2021 - 10.1186/s12711-020-00597-9
Genetics, selection, evolution, Vol. 53 (2021)
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14 p, 1.9 MB |
Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species
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Zingaretti, Laura M. (Centre de Recerca en Agrigenòmica) ;
Gezan, Salvador Alejandro (University of Florida. School of Forest Resources and Conservation (USA)) ;
Ferrão, Luis Felipe V. (University of Florida. Horticultural Sciences Department (USA)) ;
Osorio, Luis F. (University of Florida. IFAS Gulf Coast Research and Education Center (USA)) ;
Monfort, Amparo (Centre de Recerca en Agrigenòmica) ;
Muñoz, Patricio R. (University of Florida. Horticultural Sciences Department (USA)) ;
Whitaker, Vance M. (University of Florida. IFAS Gulf Coast Research and Education Center (USA)) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates are predicted using genome wide marker information. Although numerous examples of GP exist in plants and animals, applications to polyploid organisms are still scarce, partly due to limited genome resources and the complexity of this system. [...]
2020 - 10.3389/fpls.2020.00025
Frontiers in plant science, Vol. 11 (February 2020) , art. 25
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