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1.
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25 p, 23.2 MB |
CRISPR/Cas9 gene editing uncovers the roles of CONSTITUTIVE TRIPLE RESPONSE 1 and REPRESSOR OF SILENCING 1 in melon fruit ripening and epigenetic regulation
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Giordano, Andrea (Centre de Recerca en Agrigenòmica) ;
Santo Domingo, Miguel (Centre de Recerca en Agrigenòmica) ;
Quadrana, Leandro (Institut de Biologie de l'Ecole Normale Supérieure) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Martín-Hernández, Ana Montserrat (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Melon (Cucumis melo) has emerged as an alternative model to tomato for studying fruit ripening due to the coexistence of climacteric and non-climacteric varieties. Previous characterization of a major quantitative trait locus (QTL), ETHQV8. [...]
2022 -  10.1093/jxb/erac148
Journal of Experimental Botany, Vol. 73, Issue 12 (June 2022) , p. 4022-4033
2 documents
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2.
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18 p, 7.7 MB |
Genetic dissection of climacteric fruit ripening in a melon population segregating for ripening behavior
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Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Santo Domingo, Miguel (Centre de Recerca en Agrigenòmica) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Phillips, Michael A. (University of Toronto. Department of Biology) ;
Zhao, Guangwei (Zhengzhou Fruit Research Institute) ;
Lian, Qun (Agricultural Genomics Institute at Shenzhen) ;
Xu, Yongyang (Zhengzhou Fruit Research Institute) ;
He, Yuhua (Zhengzhou Fruit Research Institute) ;
Huang, Sanwen (Agricultural Genomics Institute at Shenzhen) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Melon is as an alternative model to understand fruit ripening due to the coexistence of climacteric and non-climacteric varieties within the same species, allowing the study of the processes that regulate this complex trait with genetic approaches. [...]
2020 - 10.1038/s41438-020-00411-z
Horticulture research, Vol. 7 (November 2020) , art. 187
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3.
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13 p, 4.7 MB |
A novel introgression line collection to unravel the genetics of climacteric ripening and fruit quality in melon
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Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Santo Domingo, Miguel (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Valverde, Laura (Centre de Recerca en Agrigenòmica) ;
Martín-Hernández, Ana Montserrat (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Introgression lines are valuable germplasm for scientists and breeders, since they ease genetic studies such as QTL interactions and positional cloning as well as the introduction of favorable alleles into elite varieties. [...]
2021 - 10.1038/s41598-021-90783-6
Scientific reports (Nature Publishing Group), Vol. 11 (May 2021) , art 11364
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4.
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43 p, 1.5 MB |
Genetic dissection of aroma biosynthesis in melon and its relationship with climacteric ripening
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Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Eltahiri, Abdelali (Centre de Recerca en Agrigenòmica) ;
Bar, Einat (Newe Ya'ar Research Center) ;
Lewinsohn, Efraim (Newe Ya'ar Research Center) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica)
Aroma is an essential trait in melon fruit quality, but its complexity and genetic basis are still poorly understood. The aim of this study was the identification of quantitative trait loci (QTLs) underlying volatile organic compounds (VOCs) biosynthesis in melon rind and flesh, using a Recombinant Inbred Line (RIL) population from the cross 'Piel de Sapo' (PS) × 'Védrantais' (VED), two commercial varieties segregating for ripening behavior. [...]
2021 - 10.1016/j.foodchem.2021.129484
Food chemistry, Vol. 353 (August 2021) , art. 129484
3 documents
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5.
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10 p, 860.7 KB |
GENOMES UNCOUPLED1-independent retrograde signaling targets the ethylene pathway to repress photomorphogenesis
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Gommers, Charlotte M. M. (Centre de Recerca en Agrigenòmica) ;
Ruiz-Sola, M. Águila (Centre de Recerca en Agrigenòmica) ;
Ayats, Alba (Centre de Recerca en Agrigenòmica) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Monte Collado, Elena (Centre de Recerca en Agrigenòmica)
When germinating in the light, Arabidopsis (Arabidopsis thaliana) seedlings undergo photomorphogenic development, characterized by short hypocotyls, greening, and expanded cotyledons. Stressed chloroplasts emit retrograde signals to the nucleus that induce developmental responses and repress photomorphogenesis. [...]
2021 - 10.1093/plphys/kiaa015
Plant Physiology, Vol. 185, Issue 1 (January 2021) , p. 67-76
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6.
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10 p, 1.1 MB |
An Improved Melon Reference Genome With Single-Molecule Sequencing Uncovers a Recent Burst of Transposable Elements With Potential Impact on Genes
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Castanera, Raúl (Centre de Recerca en Agrigenòmica) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica)
The published melon (Cucumis melo L. ) reference genome assembly (v3. 6. 1) has still 41. 6 Mb (Megabases) of sequences unassigned to pseudo-chromosomes and about 57 Mb of gaps. Although different approaches have been undertaken to improve the melon genome assembly in recent years, the high percentage of repeats (~40%) and limitations due to read length have made it difficult to resolve gaps and scaffold's misassignments to pseudomolecules, especially in the heterochromatic regions. [...]
2020 - 10.3389/fpls.2019.01815
Frontiers in plant science, Vol. 10 (January 2020) , art. 1815
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11 p, 2.5 MB |
CmVPS41 Is a General Gatekeeper for Resistance to Cucumber Mosaic Virus Phloem Entry in Melon
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Pascual, Laura (Centre de Recerca en Agrigenòmica) ;
Jinqiang, Yan (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Monforte, Antonio J. (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas) ;
Picó Silvent, Belén (Instituto de Conservación y Mejora de la Agrodiversidad Valenciana) ;
Martín-Hernández, Ana Montserrat (Centre de Recerca en Agrigenòmica)
Melon production is often compromised by viral diseases, which cannot be treated with chemicals. Therefore, the use of genetic resistances is the main strategy for generating crops resistant to viruses. [...]
2019 - 10.3389/fpls.2019.01219
Frontiers in plant science, Vol. 10 (October 2019) , art. 1219
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8.
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10 p, 1.6 MB |
Mapping Cucumber Vein Yellowing Virus Resistance in Cucumber (Cucumis sativus L.) by Using BSA-seq Analysis
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Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ;
Fontaine, Anne-Sophie (Semillas Fitó S.A.) ;
Mayor, Patricia (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ;
Miras, Manuel (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ;
Jahrmann, Torben (Semillas Fitó S.A.) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Aranda, Miguel A. (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal)
Cucumber vein yellowing virus (CVYV) causes severe yield losses in cucurbit crops across Mediterranean countries. The control of this virus is based on cultural practices to prevent the presence of its vector (Bemisia tabaci) and breeding for natural resistance, which requires the identification of the loci involved and the development of molecular markers for linkage analysis. [...]
2019 - 10.3389/fpls.2019.01583
Frontiers in plant science, Vol. 10 (December 2019) , art. 1583
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9.
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35 p, 12.9 MB |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits
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Zhao, Guangwei (Zhengzhou Fruit Research Institute) ;
Lian, Qun (Agricultural Genomics Institute at Shenzhen) ;
Zhang, Zhonghua (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Fu, Qiushi (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
He, Yuhua (Zhengzhou Fruit Research Institute) ;
Ma, Shuangwu (Zhengzhou Fruit Research Institute) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Monforte, Antonio J. (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Wang, Pingyong (Zhengzhou Fruit Research Institute) ;
Julca, Irene (Centre de Recerca en Agrigenòmica) ;
Wang, Huaisong (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Liu, Junpu (Zhengzhou Fruit Research Institute) ;
Xu, Yong (Beijing Key Laboratory of Vegetable Germplasm Improvement) ;
Wang, Runze (Nanjing Agricultural University) ;
Ji, Jiabing (Agricultural Genomics Institute at Shenzhen) ;
Xu, Zhihong (Zhengzhou Fruit Research Institute) ;
Kong, Weihu (Zhengzhou Fruit Research Institute) ;
Zhong, Yang (Agricultural Genomics Institute at Shenzhen) ;
Shang, Jianli (Zhengzhou Fruit Research Institute) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Zhang, Jian (Zhengzhou Fruit Research Institute) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Oren, Elad (NeweYa'ar Research Center) ;
Ou, Diandian (Zhengzhou Fruit Research Institute) ;
Wang, Jiming (Zhengzhou Fruit Research Institute) ;
Sun, Dexi (Zhengzhou Fruit Research Institute) ;
Zhao, Shengjie (Zhengzhou Fruit Research Institute) ;
Zhu, Yingchun (Zhengzhou Fruit Research Institute) ;
Li, Na (Zhengzhou Fruit Research Institute) ;
Katzir, Nurit (NeweYa'ar Research Center) ;
Gur, Amit (NeweYa'ar Research Center) ;
Dogimont, Catherine (Institut National de la Recherche Agronomique (França)) ;
Schaefer, Hanno (Technical University of Munich. Department of Ecology and Ecosystem Management) ;
Fan, Wei (Agricultural Genomics Institute at Shenzhen) ;
Bendahmane, Abdelhafid (Institut National de la Recherche Agronomique (França)) ;
Fei, Zhangjun (Cornell University. Boyce Thompson Institute for Plant Research) ;
Pitrat, Michel (Institut National de la Recherche Agronomique (França)) ;
Gabaldón, Toni (Centre de Regulació Genòmica) ;
Lin, Tao (Agricultural Genomics Institute at Shenzhen) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Xu, Yongyang (Zhengzhou Fruit Research Institute) ;
Huang, Sanwen (Agricultural Genomics Institute at Shenzhen)
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. [...]
2019 - 10.1038/s41588-019-0522-8
Nature genetics, Vol. 51, issue 11 (Nov. 2019) , p. 1607-1615
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10.
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17 p, 3.0 MB |
QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map
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Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Pérez, S. (Centre de Recerca en Agrigenòmica) ;
Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ;
Fernández, Marta (Semillas Fitó, S.L) ;
Jahrmann, Torben (Semillas Fitó, S.L.) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Background: Melon shows a broad diversity in fruit morphology and quality, which is still underexploited in breeding programs. The knowledge of the genetic basis of fruit quality traits is important for identifying new alleles that may be introduced in elite material by highly efficient molecular breeding tools. [...]
2018 - 10.1186/s12870-018-1537-5
BMC plant biology, Vol. 18 (2018) , art. 324
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