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Articles, 3 records found
Articles 3 records found  
13 p, 1.4 MB The site frequency/dosage spectrum of autopolyploid populations / Ferretti, Luca (The Pirbright Institute) ; Ribeca, Paolo (The Pirbright Institute) ; Ramos-Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica)
The Site Frequency Spectrum (SFS) and the heterozygosity of allelic variants are among the most important summary statistics for population genetic analysis of diploid organisms. We discuss the generalization of these statistics to populations of autopolyploid organisms in terms of the joint Site Frequency/Dosage Spectrum and its expected value for autopolyploid populations that follow the standard neutral model. [...]
2018 - 10.3389/fgene.2018.00480
Frontiers in genetics, Vol. 9 (Oct. 2018) , art. 480  
12 p, 1.0 MB Genome sequence of the olive tree, Olea europaea / Cruz, Fernando (Universitat Pompeu Fabra) ; Julca, Irene (Universitat Autònoma de Barcelona) ; Gómez-Garrido, Jèssica (Universitat Pompeu Fabra) ; Loska, Damian (The Barcelona Institute of Science and Technology) ; Marcet-Houben, Marina (The Barcelona Institute of Science and Technology) ; Cano, Emilio (Consejo Superior de Investigaciones Científicas) ; Galán, Beatriz (Consejo Superior de Investigaciones Científicas) ; Frias, Leonor (Universitat Pompeu Fabra) ; Ribeca, Paolo (Universitat Pompeu Fabra) ; Derdak, Sophia (Universitat Pompeu Fabra) ; Gut, Marta (Universitat Pompeu Fabra) ; Sánchez Fernández, Manuel (Grupo Santander) ; García, José Luis (Consejo Superior de Investigaciones Científicas) ; Gut, Ivo (Universitat Pompeu Fabra) ; Vargas, Pablo (Vargas Gómez) (Royal Botanical Garden of Madrid) ; Alioto, Tyler (Centre Nacional d'Anàlisi Genòmica) ; Gabaldón, Toni (CRG-Centre for Genomic Regulation)
The Mediterranean olive tree (Olea europaea subsp. europaea) was one of the first trees to be domesticated and is currently of major agricultural importance in the Mediterranean region as the source of olive oil. [...]
2016 - 10.1186/s13742-016-0134-5
GigaScience, Vol. 5, Issue 1 (December 2016) , art. 29  
13 p, 995.3 KB Boosting the FM-index on the GPU : effective techniques to mitigate random memory access / Chacón de San Baldomero, Alejandro (Universitat Autònoma de Barcelona) ; Marco-Sola, Santiago (Centre Nacional d'Anàlisi Genòmica) ; Espinosa Morales, Antonio Miguel (Universitat Autònoma de Barcelona) ; Ribeca, Paolo (The Pirbright Institute) ; Moure López, Juan Carlos (Universitat Autònoma de Barcelona)
The recent advent of high-throughput sequencing machines producing big amounts of short reads has boosted the interest in efficient string searching techniques. As of today, many mainstream sequence alignment software tools rely on a special data structure, called the FM-index, which allows for fast exact searches in large genomic references. [...]
2015 - 10.1109/TCBB.2014.2377716
IEEE/ACM Transactions on computational biology and bioinformatics, Vol. 12, No. 5 (Sep.-Oct. 2015)  

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