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1.
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16 p, 3.6 MB |
The population genomic legacy of the second plague pandemic
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Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute) ;
Ebenesersdóttir, S. Sunna (University of Iceland. Department of Anthropology) ;
Lundstrøm, Inge K.C. (University of Copenhagen. The GLOBE Institute) ;
Turner-Walker, Gordon (National Yunlin University of Science & Technology (Taiwan)) ;
Moore, Kristjan H.S. (deCODE Genetics (Reykjavík, Islàndia)) ;
Luisi, Pierre (Universidad Nacional de Córdoba (Argentina)) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
Martin, Michael D. (Norwegian University of Science and Technology. NTNU University Museum) ;
Ellegaard, Martin Rene (Norwegian University of Science and Technology. NTNU University Museum) ;
Magnússon, Ólafur þ. (deCODE Genetics (Reykjavík, Islàndia)) ;
Sigurðsson, Ásgeir (deCODE Genetics (Reykjavík, Islàndia)) ;
Snorradóttir, Steinunn (deCODE Genetics (Reykjavík, Islàndia)) ;
Magnúsdóttir, Droplaug N. (deCODE Genetics (Reykjavík, Islàndia)) ;
Laffoon, Jason E. (Leiden University. Department of Archaeological Sciences) ;
van Dorp, Lucy (University College London. Department of Genetics, Evolution and Environment) ;
Liu, Xiaodong (University of Copenhagen. Department of Biology) ;
Moltke, Ida (University of Copenhagen. Department of Biology) ;
Ávila-Arcos, Maria C (Universidad Nacional Autónoma de México. Laboratorio Internacional de Investigación sobre el Genoma Humano) ;
Schraiber, Joshua G. (Illumina Inc. Illumina Artificial Intelligence Laboratory (USA)) ;
Rasmussen, Simon (University of Copenhagen. Novo Nordisk Foundation Center for Protein Research) ;
Juan, David (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Gelabert, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Fotakis, Anna K. (University of Copenhagen. The GLOBE Institute) ;
Iraeta-Orbegozo, Miren (University of Copenhagen. The GLOBE Institute) ;
Vågene, Åshild J. (Max Planck Institute for the Science of Human History) ;
Denham, Sean Dexter (University of Stavanger. Museum of Archaeology) ;
Christophersen, Axel (Norwegian University of Science and Technology. NTNU University Museum) ;
Stenøien, Hans K. (Norwegian University of Science and Technology. NTNU University Museum) ;
Garrett Vieira, Filipe (University of Copenhagen. The GLOBE Institute) ;
Liu, Shanlin (China National GeneBank) ;
Günther, Torsten (Evolutionsbiologisk Centrum EBC (Sweden)) ;
Kivisild, Toomas (University of Tartu. Institute of Genomics) ;
Moseng, Ole Georg (University of South-Eastern Norway. Department of Business, History and Social Sciences) ;
Skar, Birgitte (Norwegian University of Science and Technology. NTNU University Museum) ;
Cheung, Christina (Muséum National d'Histoire Naturelle (París, França)) ;
Sandoval-Velasco, Marcela (University of Copenhagen. The GLOBE Institute) ;
Wales, Nathan (University of York. Department of Archaeology) ;
Schroeder, Hannes (University of Copenhagen. The GLOBE Institute) ;
Campos, Paula F. (Universidade do Porto. Centro Interdisciplinar de Investigação Marinha e Ambiental) ;
Guðmundsdóttir, Valdís B. (University of Iceland. Department of Anthropology) ;
Sicheritz-Ponten, Thomas (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Petersen, Bent (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Halgunset, Jostein (Biobank1 (Norway)) ;
Gilbert, Edmund (School of Pharmacy and Biomolecular Sciences (Ireland)) ;
Cavalleri, Gianpiero L. (FutureNeuro SFI Research Centre (Ireland)) ;
Hovig, Eivind (University of Oslo. Center for Bioinformatics) ;
Kockum, Ingrid (Karolinska Institutet (Estocolm, Suècia). Department of Clinical Neuroscience) ;
Olsson, Tomas (Karolinska Institutet (Estocolm, Suècia). Department of Clinical Neuroscience) ;
Alfredsson, Lars (Karolinska Institutet (Estocolm, Suècia)) ;
Hansen, Thomas F. (Copenhagen Mental Health Services. Institute of Biological Psychiatry) ;
Werge, Thomas (Copenhagen Mental Health Services. Institute of Biological Psychiatry) ;
Willerslev, Eske (University of Cambridge. Department of Zoology) ;
Balloux, François (University College London. Department of Genetics, Evolution and Environment) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Nielsen, Rasmus (University of California. Department of Integrative Biology) ;
Stefánsson, Kári (deCODE Genetics (Reykjavík, Islàndia)) ;
Helgason, Agnar (deCODE Genetics (Reykjavík, Islàndia)) ;
Gilbert, M. Thomas P. (Norwegian University of Science and Technology. University Museum)
Human populations have been shaped by catastrophes that may have left long-lasting signatures in their genomes. One notable example is the second plague pandemic that entered Europe in ca. 1,347 CE and repeatedly returned for over 300 years, with typical village and town mortality estimated at 10%-40%. [...]
2022 -  10.1016/j.cub.2022.09.023
Current Biology, Vol. 32 (November 2022) , p. 1-9/e1-e6
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2.
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16 p, 809.0 KB |
A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives
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Westbury, Michael V. (University of Copenhagen. The GLOBE Institute) ;
Barnett, Ross (University of Copenhagen. The GLOBE Institute) ;
Sandoval-Velasco, Marcela (University of Copenhagen. The GLOBE Institute) ;
Gower, Graham (University of Copenhagen. The GLOBE Institute) ;
Garrett Vieira, Filipe (University of Copenhagen. The GLOBE Institute) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Hansen, Anders Johannes (University of Copenhagen. The GLOBE Institute) ;
Yamaguchi, Nobuyuki (Universiti Malaysia Terengganu. Institute of Tropical Biodiversity and Sustainable Development) ;
Werdelin, Lars (Swedish Museum of Natural History. Department of Palaeobiology) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute) ;
Lorenzen, Eline (University of Copenhagen. The GLOBE Institute)
Background: The evolutionary relationships of Felidae during their Early-Middle Miocene radiation is contentious. Although the early common ancestors have been subsumed under the grade-group Pseudaelurus, this group is thought to be paraphyletic, including the early ancestors of both modern cats and extinct sabretooths. [...]
2021 - 10.12688/openreseurope.13104.2
Open Research Europe, Vol. 1 (2021) , art. 25
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3.
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14 p, 1.8 MB |
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
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Barnett, Ross (University of Copenhagen. Section for Evolutionary Genomics) ;
Westbury, Michael V. (University of Copenhagen. Section for Evolutionary Genomics) ;
Sandoval-Velasco, Marcela (University of Copenhagen. Section for Evolutionary Genomics) ;
Garrett Vieira, Filipe (University of Copenhagen. Section for Evolutionary Genomics) ;
Jeon, Sungwon (Ulsan National Institute of Science and Technology. Department of Biomedical Engineering) ;
Zazula, Grant (Government of Yukon. Yukon Palaeontology Program) ;
Martin, Michael (Norwegian University of Science and Technology. Department of Natural History) ;
Ho, Simon Y. W. (University of Sydney. School of Life and Environmental Sciences) ;
Mather, Niklas (University of Sydney. School of Life and Environmental Sciences) ;
Gopalakrishnan, Shyam (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Ramos-Madrigal, Jazmín (University of Copenhagen. Center for Evolutionary Hologenomics) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Zepeda Mendoza, Marie Lisandra (University of Birmingham. Institute of Microbiology and Infection) ;
Antunes, Agostinho (University of Porto. Department of Biology) ;
Baez, Aldo Carmon (University of Copenhagen. Section for Evolutionary Genomics) ;
De Cahsan, Binia (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Larson, Greger (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
O'Brien, Stephen J. (Nova Southeastern University. Guy Harvey Oceanographic Center) ;
Eizirik, Eduardo (Instituto Pró-Carnívoros) ;
Johnson, Warren E. (Walter Reed Army Institute of Research) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute. Center for Species Survival) ;
Wilting, Andreas (Leibniz Institute for Zoo and Wildlife Research) ;
Fickel, Jöms (University of Potsdam. Institute for Biochemistry and Biology) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics) ;
Lorenzen, Eline D. (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Hansen, Anders J. (University of Copenhagen. Section for GeoGenetics) ;
Zhang, Guojie (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Bhak, Jong (Personal Genomics Institute. Genome Research Foundation) ;
Yamaguchi, Nobuyuki (Universiti Malaysia Terengganu. Institute of Tropical Biodiversity and Sustainable Development) ;
Gilbert, M. Thomas P. (University of Copenhagen. Center for Evolutionary Hologenomics)
Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine teeth, powerful forelimbs, a sloping back, and an enlarged optic bulb, all of which were key characteristics for predation on Pleistocene megafauna [5]. [...]
2020 - 10.1016/j.cub.2020.09.051
Current Biology, Vol. 30, Issue 24 (December 2020) , p. ages 5018-5025.e5
2 documents
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4.
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8 p, 2.5 MB |
The evolutionary history of extinct and living lions
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de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Barnett, Ross (University of Copenhagen) ;
Sandoval-Velasco, Marcela (University of Copenhagen) ;
Yamaguchi, Nobuyuki (University Malaysia Terengganu) ;
Garrett Vieira, Filipe (University of Copenhagen) ;
Zepeda Mendoza, Marie Lisandra (University of Birmingham) ;
Liu, Shiping (BGI-Shenzhen) ;
Martin, Michael (Norwegian University of Science and Technology) ;
Sinding, Mikkel-Holger S. (University of Copenhagen) ;
Mak, Sarah S. T. (University of Copenhagen) ;
Carøe, Christian (University of Copenhagen) ;
Liu, Shanlin (BGI-Shenzhen) ;
Guo, Chunxue (BGI-Shenzhen) ;
Zheng, Jiao (University of Chinese. Academy of Sciences) ;
Zazula, Grant (Government of Yukon) ;
Baryshnikov, Gennady (Russian Academy of Sciences) ;
Eizirik, Eduardo (Instituto Pró-Carnívoros) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute) ;
Johnson, Warren E. (Walter Reed Army Institute of Research) ;
Antunes, Agostinho (University of Porto) ;
Sicheritz-Ponten, Thomas (Asian Institute of Medicine, Science and Technology) ;
Gopalakrishnan, Shyam (University of Copenhagen) ;
Larson, Greger (University of Oxford) ;
Yang, Huanming (James D. Watson Institute of Genome Science) ;
O'Brien, Stephen J. (Nova Southeastern University) ;
Hansen, Anders J. (University of Copenhagen) ;
Zhang, Guojie (Chinese Academy of Sciences) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Gilbert, M. Thomas P. (Norwegian University of Science and Technology)
Lions were once the most globally widespread mammal species, with distinct populations in Africa, Eurasia, and America. We generated a genomic dataset that included 2 extinct Pleistocene cave lions, 12 lions from historically extinct populations in Africa and the Middle East, and 6 modern lions from Africa and India. [...]
2020 - 10.1073/pnas.1919423117
Proceedings of the National Academy of Sciences of the United States of America, Vol. 117, Num. 20 (May 2020) , p. 10927-10934
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13 p, 1.5 MB |
Plasmodium vivax Malaria viewed through the lens of an eradicated European strain
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van Dorp, Lucy (University College London. UCL Genetics Institute (UK)) ;
Gelabert Xirinachs, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Rieux, Adrien (Coopération Internationale en Recherche Agronomique pour le Développement (France)) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Carøe, Christian (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Sandoval Velasco, Marcela (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Fregel, Rosa (Universidad de La Laguna. Departamento de Bioquímica, Microbiología, Biología Celular y Genética) ;
Olalde, Iñigo (Harvard Medical School. Department of Genetics (USA)) ;
Escosa, Raúl (Consorci de Polítiques Ambientals de les Terres de l'Ebre) ;
Aranda Pallero, Carles (Consell Comarcal del Baix Llobregat. Servei de Control de Mosquits) ;
Huijben, Silvie (Barcelona Institute for Global Health (ISGlobal)) ;
Mueller, Ivo (Barcelona Institute for Global Health (ISGlobal)) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Balloux, François (University College London. UCL Genetics Institute (UK)) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
The protozoan Plasmodium vivax is responsible for 42% of all cases of malaria outside Africa. The parasite is currently largely restricted to tropical and subtropical latitudes in Asia, Oceania, and the Americas. [...]
2020 - 10.1093/molbev/msz264
Molecular biology and evolution, Vol. 37, Issue 3 (March 2020) , p. 773-785
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19 p, 6.6 MB |
Evolutionary history, genomic adaptation to toxic diet, and extinction of the Carolina Parakeet
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Gelabert, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Sandoval Velasco, Marcela (University of Copenhagen. The GLOBE Institute) ;
Serres, Aitor (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Renom, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
Stiller, Josefin (University of Copenhagen. Department of Biology) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Fang, Qi (BGI-Shenzhen (China)) ;
Feng, Shaohong (BGI-Shenzhen (China)) ;
Mañosa, Santi (Universitat de Barcelona. Institut de Recerca de la Biodiversitat (IRBio)) ;
Pacheco, George (University of Copenhagen. The GLOBE Institute) ;
Ferrando-Bernal, Manuel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Shi, Guolin (Northwestern Polytechnical University. Center of Special Environmental Biomechanics & Biomedical Engineering) ;
Hao, Fei (Northwestern Polytechnical University. Center of Special Environmental Biomechanics & Biomedical Engineering) ;
Chen, Xianqing (Northwestern Polytechnical University. Center for Ecological and Environmental Sciences) ;
Petersen, Bent (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Olsen, Remi-André (Stockholm University. Department of Biochemistry and Biophysics) ;
Navarro, Arcadi, 1969- (Institució Catalana de Recerca i Estudis Avançats) ;
Deng, Yuan (BGI-Shenzhen (China)) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Zhang, Guojie (Chinese Academy of Sciences. Center for Excellence in Animal Evolution and Genetics) ;
Antunes, Agostinho (University of Porto. Department of Biology) ;
Gilbert, M. Thomas P. (NTNU University Museum (Norway)) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
As the only endemic neotropical parrot to have recently lived in the northern hemisphere, the Carolina parakeet (Conuropsis carolinensis) was an iconic North American bird. The last surviving specimen died in the Cincinnati Zoo in 1918 [1]. [...]
2020 - 10.1016/j.cub.2019.10.066
Current biology, Vol. 30, Issue 1 (January 2020) , p. 108-114
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