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16 p, 3.6 MB |
The population genomic legacy of the second plague pandemic
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Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute) ;
Ebenesersdóttir, S. Sunna (University of Iceland. Department of Anthropology) ;
Lundstrøm, Inge K.C. (University of Copenhagen. The GLOBE Institute) ;
Turner-Walker, Gordon (National Yunlin University of Science & Technology (Taiwan)) ;
Moore, Kristjan H.S. (deCODE Genetics (Reykjavík, Islàndia)) ;
Luisi, Pierre (Universidad Nacional de Córdoba (Argentina)) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
Martin, Michael D. (Norwegian University of Science and Technology. NTNU University Museum) ;
Ellegaard, Martin Rene (Norwegian University of Science and Technology. NTNU University Museum) ;
Magnússon, Ólafur þ. (deCODE Genetics (Reykjavík, Islàndia)) ;
Sigurðsson, Ásgeir (deCODE Genetics (Reykjavík, Islàndia)) ;
Snorradóttir, Steinunn (deCODE Genetics (Reykjavík, Islàndia)) ;
Magnúsdóttir, Droplaug N. (deCODE Genetics (Reykjavík, Islàndia)) ;
Laffoon, Jason E. (Leiden University. Department of Archaeological Sciences) ;
van Dorp, Lucy (University College London. Department of Genetics, Evolution and Environment) ;
Liu, Xiaodong (University of Copenhagen. Department of Biology) ;
Moltke, Ida (University of Copenhagen. Department of Biology) ;
Ávila-Arcos, Maria C (Universidad Nacional Autónoma de México. Laboratorio Internacional de Investigación sobre el Genoma Humano) ;
Schraiber, Joshua G. (Illumina Inc. Illumina Artificial Intelligence Laboratory (USA)) ;
Rasmussen, Simon (University of Copenhagen. Novo Nordisk Foundation Center for Protein Research) ;
Juan, David (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Gelabert, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Fotakis, Anna K. (University of Copenhagen. The GLOBE Institute) ;
Iraeta-Orbegozo, Miren (University of Copenhagen. The GLOBE Institute) ;
Vågene, Åshild J. (Max Planck Institute for the Science of Human History) ;
Denham, Sean Dexter (University of Stavanger. Museum of Archaeology) ;
Christophersen, Axel (Norwegian University of Science and Technology. NTNU University Museum) ;
Stenøien, Hans K. (Norwegian University of Science and Technology. NTNU University Museum) ;
Garrett Vieira, Filipe (University of Copenhagen. The GLOBE Institute) ;
Liu, Shanlin (China National GeneBank) ;
Günther, Torsten (Evolutionsbiologisk Centrum EBC (Sweden)) ;
Kivisild, Toomas (University of Tartu. Institute of Genomics) ;
Moseng, Ole Georg (University of South-Eastern Norway. Department of Business, History and Social Sciences) ;
Skar, Birgitte (Norwegian University of Science and Technology. NTNU University Museum) ;
Cheung, Christina (Muséum National d'Histoire Naturelle (París, França)) ;
Sandoval-Velasco, Marcela (University of Copenhagen. The GLOBE Institute) ;
Wales, Nathan (University of York. Department of Archaeology) ;
Schroeder, Hannes (University of Copenhagen. The GLOBE Institute) ;
Campos, Paula F. (Universidade do Porto. Centro Interdisciplinar de Investigação Marinha e Ambiental) ;
Guðmundsdóttir, Valdís B. (University of Iceland. Department of Anthropology) ;
Sicheritz-Ponten, Thomas (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Petersen, Bent (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Halgunset, Jostein (Biobank1 (Norway)) ;
Gilbert, Edmund (School of Pharmacy and Biomolecular Sciences (Ireland)) ;
Cavalleri, Gianpiero L. (FutureNeuro SFI Research Centre (Ireland)) ;
Hovig, Eivind (University of Oslo. Center for Bioinformatics) ;
Kockum, Ingrid (Karolinska Institutet (Estocolm, Suècia). Department of Clinical Neuroscience) ;
Olsson, Tomas (Karolinska Institutet (Estocolm, Suècia). Department of Clinical Neuroscience) ;
Alfredsson, Lars (Karolinska Institutet (Estocolm, Suècia)) ;
Hansen, Thomas F. (Copenhagen Mental Health Services. Institute of Biological Psychiatry) ;
Werge, Thomas (Copenhagen Mental Health Services. Institute of Biological Psychiatry) ;
Willerslev, Eske (University of Cambridge. Department of Zoology) ;
Balloux, François (University College London. Department of Genetics, Evolution and Environment) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Nielsen, Rasmus (University of California. Department of Integrative Biology) ;
Stefánsson, Kári (deCODE Genetics (Reykjavík, Islàndia)) ;
Helgason, Agnar (deCODE Genetics (Reykjavík, Islàndia)) ;
Gilbert, M. Thomas P. (Norwegian University of Science and Technology. University Museum)
Human populations have been shaped by catastrophes that may have left long-lasting signatures in their genomes. One notable example is the second plague pandemic that entered Europe in ca. 1,347 CE and repeatedly returned for over 300 years, with typical village and town mortality estimated at 10%-40%. [...]
2022 -  10.1016/j.cub.2022.09.023
Current Biology, Vol. 32 (November 2022) , p. 1-9/e1-e6
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13 p, 1.1 MB |
Arctic-adapted dogs emerged at the Pleistocene-Holocene transition
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Sinding, Mikkel-Holger S. (University of Copenhagen. The GLOBE Institute) ;
Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute) ;
Ramos-Madrigal, Jazmín (University of Copenhagen. The GLOBE Institute) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Pitulko, Vladimir (Russian Academy of Sciences. Institute for the History of Material Culture) ;
Kuderna, Lukas (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Feuerborn, Tatiana (University of Copenhagen. The GLOBE Institute) ;
Frantz, Laurent (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
Garrett Vieira, Filipe (University of Copenhagen. The GLOBE Institute) ;
Niemann, Jonas (University of Copenhagen. The GLOBE Institute) ;
Samaniego Castruita, José Alfredo (University of Copenhagen. The GLOBE Institute) ;
Carøe, Christian (University of Copenhagen. The GLOBE Institute) ;
Andersen-Ranberg, Emilie Ulrikka (University of Greenland. The Qimmeq Project) ;
Jordan, Peter (University of Groningen. Arctic Centre and Groningen Institute of Archaeology) ;
Pavlova, Elena (Arctic and Antarctic Research Institute (St. Petersburg, Russia)) ;
Nikolskiy, Pavel (Russian Academy of Sciences. Geological Institute) ;
Kasparov, Aleksei (Russian Academy of Sciences. Institute for the History of Material Culture) ;
Ivanova, Varvara (VNIIOkeangeologia Research Institute) ;
Willerslev, Eske (University of Copenhagen. The GLOBE Institute) ;
Skoglund, Pontus (Harvard Medical School. Department of Genetics) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Wennerberg, Sanne Eline (Government of Greenland. Ministry of Fisheries, Hunting and Agriculture) ;
Heide-Jørgensen, Mads Peter (Greenland Institute of Natural Resources) ;
Dietz, Rune (Aarhus University. Department of Bioscience) ;
Sonne, Christian (University of Greenland. The Qimmeq Project) ;
Meldgaard, Morten (University of Copenhagen. The GLOBE Institute) ;
Dalén, Love (Centre for Palaeogenetics) ;
Larson, Greger (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
Petersen, Bent (University of Copenhagen. The GLOBE Institute) ;
Sicheritz-Ponten, Thomas (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Bachmann, Lutz (University of Oslo. Natural History Museum) ;
Wiig, Øystein (University of Oslo. Natural History Museum) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Hansen, Anders Johannes (University of Copenhagen. The GLOBE Institute) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute)
Although sled dogs are one of the most specialized groups of dogs, their origin and evolution has received much less attention than many other dog groups. We applied a genomic approach to investigate their spatiotemporal emergence by sequencing the genomes of 10 modern Greenland sled dogs, an ~9500-year-old Siberian dog associated with archaeological evidence for sled technology, and an ~33,000-year-old Siberian wolf. [...]
2020 - 10.1126/science.aaz8599
Science, Vol. 368, Issue 6498 (June 2020) , p. 1495-1499
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8 p, 2.5 MB |
The evolutionary history of extinct and living lions
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de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Barnett, Ross (University of Copenhagen) ;
Sandoval-Velasco, Marcela (University of Copenhagen) ;
Yamaguchi, Nobuyuki (University Malaysia Terengganu) ;
Garrett Vieira, Filipe (University of Copenhagen) ;
Zepeda Mendoza, Marie Lisandra (University of Birmingham) ;
Liu, Shiping (BGI-Shenzhen) ;
Martin, Michael (Norwegian University of Science and Technology) ;
Sinding, Mikkel-Holger S. (University of Copenhagen) ;
Mak, Sarah S. T. (University of Copenhagen) ;
Carøe, Christian (University of Copenhagen) ;
Liu, Shanlin (BGI-Shenzhen) ;
Guo, Chunxue (BGI-Shenzhen) ;
Zheng, Jiao (University of Chinese. Academy of Sciences) ;
Zazula, Grant (Government of Yukon) ;
Baryshnikov, Gennady (Russian Academy of Sciences) ;
Eizirik, Eduardo (Instituto Pró-Carnívoros) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute) ;
Johnson, Warren E. (Walter Reed Army Institute of Research) ;
Antunes, Agostinho (University of Porto) ;
Sicheritz-Ponten, Thomas (Asian Institute of Medicine, Science and Technology) ;
Gopalakrishnan, Shyam (University of Copenhagen) ;
Larson, Greger (University of Oxford) ;
Yang, Huanming (James D. Watson Institute of Genome Science) ;
O'Brien, Stephen J. (Nova Southeastern University) ;
Hansen, Anders J. (University of Copenhagen) ;
Zhang, Guojie (Chinese Academy of Sciences) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Gilbert, M. Thomas P. (Norwegian University of Science and Technology)
Lions were once the most globally widespread mammal species, with distinct populations in Africa, Eurasia, and America. We generated a genomic dataset that included 2 extinct Pleistocene cave lions, 12 lions from historically extinct populations in Africa and the Middle East, and 6 modern lions from Africa and India. [...]
2020 - 10.1073/pnas.1919423117
Proceedings of the National Academy of Sciences of the United States of America, Vol. 117, Num. 20 (May 2020) , p. 10927-10934
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4.
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15 p, 1.8 MB |
Interspecific gene flow shaped the evolution of the Genus Canis
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Gopalakrishnan, Shyam (University of Copenhagen. Centre for GeoGenetics. Natural History Museum of Denmark) ;
Sinding, Mikkel-Holger S. (University of Greenland) ;
Ramos-Madrigal, Jazmín (University of Copenhagen. Centre for GeoGenetics. Natural History Museum of Denmark) ;
Niemann, Jonas (University of Copenhagen. Centre for GeoGenetics. Natural History Museum of Denmark) ;
Samaniego Castruita, Jose A. (University of Copenhagen. Centre for GeoGenetics. Natural History Museum of Denmark) ;
Garrett Vieira, Filipe (University of Copenhagen. Centre for GeoGenetics. Natural History Museum of Denmark) ;
Carøe, Christian (University of Copenhagen. Centre for GeoGenetics. Natural History Museum of Denmark) ;
Montero, Marc de Manuel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Kuderna, Lukas (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Serres, Aitor (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
González Basallote, Víctor Manuel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Liu, Yan-Hu (Yunnan University. State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan) ;
Wang, Guo-Dong (Chinese Academy of Sciences. Yunnan University. State Key Laboratory of Genetic Resources and Evolution and Yunnan Laboratory of Molecular Biology of Domestic Animals) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Mirarab, Siavash (University of California. Department of Electrical and Computer Engineering) ;
Fernandes, Carlos (Universidade de Lisboa. Centre for Ecology, Evolution and Environmental Changes) ;
Gaubert, Philippe (Université de Montpellier. Institut des Sciences de l'Evolution) ;
Koepfli, Klaus-Peter (St. Petersburg State University. Theodosius Dobzhansky Center for Genome Bioinformatics) ;
Budd, Jane (Breeding Centre for Endangered Arabian Wildlife) ;
Rueness, Eli Knispel (University of Oslo. Centre for Ecological and Evolutionary Synthesis) ;
Sillero, Claudio (University of Oxford. Wildlife Conservation Research Unit) ;
Heide-Jørgensen, Mads Peter (University of Greenland. The Qimmeq Project) ;
Petersen, Bent (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Sicheritz-Ponten, Thomas (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Bachmann, Lutz (University of Oslo. Natural History Museum) ;
Wiig, Øystein (University of Oslo. Natural History Museum) ;
Hansen, Anders J. (University of Greenland) ;
Gilbert, M. Thomas P. (Norwegian University of Science and Technology. University Museum)
The evolutionary history of the wolf-like canids of the genus Canis has been heavily debated, especially regarding the number of distinct species and their relationships at the population and species level [1-6]. [...]
2018 - 10.1016/j.cub.2018.08.041
Current biology, Vol. 28, Issue 21 (November 2018) , p. 3441-3449.e5
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