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Articles, 6 records found
Articles 6 records found  
1.
10 p, 1.6 MB The genome of woodland strawberry (Fragaria vesca) / Shulaev, Vladimir (University of North Texas. Department of Biological Sciences) ; Sargent, Daniel J. (East Malling Research) ; Crowhurst, Ross N. (New Zealand Institute for Plant and Food Research Limited) ; Mockler, Todd C. (Oregon State University. Center for Genome Research and Biocomputing) ; Folkerts, Otto (Chromatin Inc.) ; Delcher, Arthur L. (University of Maryland. Center for Bioinformatics and Computational Biology) ; Jaiswal, Pankaj (Oregon State University. Department of Botany and Plant Pathology) ; Mockaitis, Keithanne (Indiana University. Center for Genomics and Bioinformatics) ; Liston, Aaron (Oregon State University. Department of Botany and Plant Pathology) ; Mane, Shrinivasrao P. (Virginia Bioinformatics Institute) ; Burns, Paul (Joint Georgia Tech and Emory Wallace H. Coulter. Department of Biomedical Engineering) ; Davis, Thomas M. (University of New Hampshire. Department of Biological Sciences) ; Slovin, Janet P. (Henry Wallace Beltsville Agricultural Research Center) ; Bassil, Nahla (National Clonal Germplasm Repository) ; Hellens, Roger P. (New Zealand Institute for Plant and Food Research Limited) ; Evans, Clive (State University. Virginia Bioinformatics Institute) ; Harkins, Tim (Roche Diagnostics. Roche Applied Science) ; Kodira, Chinnappa (Roche Diagnostics. Roche Applied Science) ; Desany, Brian (Roche Diagnostics. Roche Applied Science) ; Crasta, Oswald R. (Chromatin Inc.) ; Jensen, Roderick V. (Virginia Tech. Department of Biological Sciences) ; Allan, Andrew C. (New Zealand Institute for Plant and Food Research Limited) ; Michael, Todd P. (State University of New Jersey. Waksman Institute of Microbiology) ; Setubal, Joao Carlos (Virginia Tech. Department of Computer Science) ; Celton, Jean-Marc (University of the Western Cape. Department of Biotechnology) ; Rees, D. Jasper G. (University of the Western Cape. Department of Biotechnology) ; Williams, Kelly P. (State University. Virginia Bioinformatics Institute) ; Holt, Sarah H. (Institute for Sustainable and Renewable Resources) ; Rojas, Juan Jairo (State University. Virginia Polytechnic Institute. Department of Horticulture) ; Chatterjee, Mithu (University of Florida. Graduate Program for Plant Molecular and Cellular Biology) ; Liu, Bo (University of New Hampshire. Department of Biological Sciences) ; Silva, Herman (University of Chile. Millennium Nucleus in Plant Cell Biotechnology) ; Meisel, Lee (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology) ; Adato, Avital (Weizmann Institute of Science. Department of Plant Sciences) ; Filichkin, Sergei A. (Oregon State University. Center for Genome Research and Biocomputing) ; Troggio, Michela (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige () ; Viola, Roberto (Istituto Agrario San Michele all'Adige (IASMA). Research and Innovation Centre. Foundation Edmund Mach) ; Ashman, Tia-Lynn (University of Pittsburgh. Department of Biological Sciences) ; Wang, Hao (University of Georgia. Department of Genetics) ; Dharmawardhana, Palitha (Oregon State University. Department of Botany and Plant Pathology) ; Elser, Justin (Oregon State University. Department of Botany and Plant Pathology) ; Raja, Rajani (Oregon State University. Department of Botany and Plant Pathology) ; Priest, Henry D. (Oregon State University. Center for Genome Research and Biocomputing) ; Bryant, Douglas W. (Oregon State University. Center for Genome Research and Biocomputing) ; Fox, Samuel E. (Oregon State University. Center for Genome Research and Biocomputing) ; Givan, Scott A. (Oregon State University. Center for Genome Research and Biocomputing) ; Wilhelm, Larry J. (Oregon State University. Center for Genome Research and Biocomputing) ; Naithani, Sushma (Oregon State University. Department of Horticulture) ; Christoffels, Alan (University of the Western Cape. South African National Bioinformatics Institute) ; Salama, David Y. (University of Florida. Horticultural Sciences Department) ; Carter, Jade (Indiana University. Center for Genomics and Bioinformatics) ; Girona, Elena L. (East Malling Research) ; Zdepski, Anna (State University of New Jersey. Waksman Institute of Microbiology) ; Wang, Wenqin (State University of New Jersey. Waksman Institute of Microbiology) ; Kerstetter, Randall A (State University of New Jersey. Waksman Institute of Microbiology) ; Schwab, Wilfried (Technical University München. Biotechnology of Natural Products) ; Korban, Schuyler S. (University of Illinois. Department of Natural Resources and Environmental Sciences) ; Davik, Jahn (Norwegian Institute for Agricultural and Environmental Research. Genetics and Biotechnology) ; Monfort Vives, Amparo (Centre de Recerca en Agrigenòmica) ; Denoyes-Rothan, Beatrice (Institut National de la Recherche Agronomique. Unité de Recherche des Espèces Fruitières) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Mittler, Ron (University of North Texas. Department of Biological Sciences) ; Flinn, Barry (Institute for Sustainable and Renewable Resources. Institute for Advanced Learning and Research) ; Aharoni, Asaph (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology. Centro de Biotecnología Vegetal.) ; Bennetzen, Jeffrey L. (University of Georgia. Department of Genetics) ; Salzberg, Steven L. (University of Maryland. Center for Bioinformatics and Computational Biology) ; Dickerman, Allan W (State University. Virginia Bioinformatics Institute. Virginia Polytechnic Institute) ; Velasco, Riccardo (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige) ; Borodovsky, Mark (Georgia Tech. School of Computational Science and Engineering) ; Veilleux, Richard E. (State University. Virginia Polytechnic Institute. Department of Horticulture) ; Folta, Kevin M. (University of Florida. Graduate Program for Plant Molecular and Cellular Biology)
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria Ã- ananassa) and other economically important rosaceous plants. [...]
2011 - 10.1038/ng.740
Nature genetics, Vol. 43, Issue 2 (February 2011) , p. 109-116  
2.
12 p, 2.1 MB Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies / Jung, Sook (Washington State University. Department of Horticulture and Landscape Architecture) ; Cestaro, Alessandro (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Troggio, Michela (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Main, Dorrie (Washington State University. Department of Horticulture and Landscape Architecture) ; Zheng, Ping (Washington State University. Department of Horticulture and Landscape Architecture) ; Cho, Ilhyung (Saginaw Valley State University. Department of Computer Science and Information Systems) ; Folta, Kevin M. (University of Florida. Horticultural Sciences Department) ; Sosinski, Bryon (North Carolina State University. Department of Horticultural Science) ; Abbott, Albert G. (Clemson University. Department of Genetics and Biochemistry) ; Celton, Jean-Marc (Institut national de la recherche agronomique (França). UMR Génétique et Horticulture) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Shulaev, Vladimir (University of North Texas. Department of Biological Sciences) ; Verde, Ignazio (Centro di Ricerca per la Frutticoltura) ; Morgante, Michele (Istituto di Genomica Applicata (Udine, Itàlia)) ; Rokhsar, Daniel (United States. Department of Energy. Joint Genome Institute) ; Velasco, Riccardo (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Sargent, Daniel James (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige)
Background: Rosaceae include numerous economically important and morphologically diverse species. Comparative mapping between the member species in Rosaceae have indicated some level of synteny. Recently the whole genome of three crop species, peach, apple and strawberry, which belong to different genera of the Rosaceae family, have been sequenced, allowing in-depth comparison of these genomes. [...]
2012 - 10.1186/1471-2164-13-129
BMC genomics, Vol. 13 (April 2012) , art. 129  
3.
14 p, 1.3 MB An integrated approach for increasing breeding efficiency in apple and peach in Europe / Laurens, Francois (Institut National Recherche Agronomique) ; Aranzana Civit, Mª José (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Bassi, Daniele (Università degli Studi di Milano) ; Bink, Marco (Wageningen University and Research. Biometris) ; Bonany, Joan (Institut de Recerca i Tecnologia Agroalimentàries) ; Caprera, Andrea (Parco Tecnologico Padano) ; Corelli-Grappadelli, Luca (Università di Bologna. Dipartimento di Scienze Agrarie) ; Costes, Evelyne (Institut National Recherche Agronomique) ; Durel, Charles-Eric (Institut National Recherche Agronomique) ; Mauroux, Jehan-Baptiste (Institut National Recherche Agronomique) ; Muranty, Hélène (Institut National Recherche Agronomique) ; Nazzicari, Nelson (Parco Tecnologico Padano) ; Pascal, Thierry (Institut National Recherche Agronomique) ; Patocchi, Andrea (Agroscope. Research Division Plant Breeding (Switzerland)) ; Peil, Andreas (Julius Kühn-Institute Research) ; Quilot-Turion, Bénédicte (Institut National Recherche Agronomique) ; Rossini, Laura (Parco Tecnologico Padano-) ; Stella, Alessandra (Parco Tecnologico Padano-) ; Troggio, Michela (Fondazione Edmund Mach. Research and Innovation Center) ; Velasco, Riccardo (Fondazione Edmund Mach. Research and Innovation Center) ; van de Weg, Eric (Wageningen University and Research)
Despite the availability of whole genome sequences of apple and peach, there has been a considerable gap between genomics and breeding. To bridge the gap, the European Union funded the FruitBreedomics project (March 2011 to August 2015) involving 28 research institutes and private companies. [...]
2018 - 10.1038/s41438-018-0016-3
Horticulture research, Vol. 5 (March 2018) , art. 11  
4.
13 p, 1.2 MB Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm / Verde, Ignazio (Centro di Ricerca per la Frutticoltura (Roma)) ; Bassil, Nahla (United States Department of Agriculture. National Clonal Germplasm Repository) ; Scalabrin, Simone (Istituto di Genomica Applicata) ; Gilmore, Barbara (United States Department of Agriculture. National Clonal Germplasm Repository) ; Lawley, Cynthia T. (Illumina Inc. (California)) ; Gasic, Ksenija (Clemson University. School of Agricultural, Forest and Environmental Sciences) ; Micheletti, Diego (Centre de Recerca en Agrigenòmica) ; Rosyara, Umesh R. (Michigan State University. Department of Horticulture) ; Cattonaro, Federica (Istituto di Genomica Applicata) ; Vendramin, Elisa (Centro di Ricerca per la Frutticoltura (Roma)) ; Main, Dorrie (Washington State University. Department of Horticulture & Landscape Architecture) ; Aramini, Valeria (Centro di Ricerca per la Frutticoltura (Roma)) ; Blas, Andrea L. (Centre de Recerca en Agrigenòmica) ; Mockler, Todd C. (The Donald Danforth Plant Science Center) ; Bryant, Douglas W. (The Donald Danforth Plant Science Center) ; Wilhelm, Larry (Oregon Health Sciences University) ; Troggio, Michela (The Istituto Agrario di San Michele all'Adige) ; Sosinski, Bryon (North Carolina State University. Department of Horticultural Science) ; Aranzana Civit, Mª José (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Iezzoni, Amy (Michigan State University. Department of Horticulture) ; Morgante, Michele (Istituto di Genomica Applicata) ; Peace, Cameron (Washington State University. Department of Horticulture & Landscape Architecture)
Although a large number of single nucleotide polymorphism (SNP) markers covering the entire genome are needed to enable molecular breeding efforts such as genome wide association studies, fine mapping, genomic selection and marker-assisted selection in peach [Prunus persica (L. [...]
The almost 7,000 SNPs verified as polymorphic through extensive empirical evaluation represent an excellent source of markers for future studies in genetic relatedness, genetic mapping, and dissecting the genetic architecture of complex agricultural traits. [...]

2012 - 10.1371/journal.pone.0035668
PloS one, Vol. 7, issue 4 (April 2012) , e35668  
5.
13 p, 1.3 MB Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family / Illa, Eudald (Centre de Recerca en Agrigenòmica) ; Sargent, Daniel J. (East Malling Research) ; Lopez Girona, Elena (East Malling Research) ; Bushakra, Jill (The New Zealand Institute for Plant & Food Research Ltd) ; Cestaro, Alessandro (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Crowhurst, Ross (The New Zealand Institute for Plant & Food Research Ltd) ; Pindo, Massimo (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Cabrera, Antonio (The Ohio State University. Department of Horticulture and Crop Science) ; Van der Knaap, Esther (The Ohio State University. Department of Horticulture and Crop Science) ; Iezzoni, Amy (Michigan State University. Department of Horticulture) ; Gardiner, Susan (The New Zealand Institute for Plant & Food Research Ltd) ; Velasco, Riccardo (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Chagné, David (The New Zealand Institute for Plant & Food Research Ltd) ; Troggio, Michela (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige)
Background. comparative genome mapping studies in Rosaceae have been conducted until now by aligning genetic maps within the same genus, or closely related genera and using a limited number of common markers. [...]
2011
BMC evolutionary biology, Vol. 11 (January 2011) , art. 9  
6.
19 p, 1.4 MB Whole-genome analysis of diversity and SNP-Major gene association in peach germplasm / Micheletti, Diego (Centre de Recerca en Agrigenòmica) ; Dettori, Maria Teresa (Centro di Ricerca per la Frutticoltura) ; Micali, Sabrina (Centro di Ricerca per la Frutticoltura) ; Aramini, Valeria (Centro di Ricerca per la Frutticoltura) ; Pacheco, Igor (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ; Da Silva Linge,Cassia (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ; Foschi, Stefano (Centro Ricerche Produzioni Vegetali) ; Banchi,Elisa (Fondazione Edmund Mach. Centro Ricerca e Innovazione) ; Barreneche, Teresa (Institut national de la recherche agronomique (França). Biologie du Fruit et Pathologie) ; Quilot-Turion, Bénédicte (Institut national de la recherche agronomique (França). Génétique et Amélioration des Fruits et Légumes) ; Lambert, Patrick (Institut national de la recherche agronomique (França). Génétique et Amélioration des Fruits et Légumes) ; Pascal, Thierry (Institut national de la recherche agronomique (França). Génétique et Amélioration des Fruits et Légumes) ; Iglesias, Ignasi (Institut de Recerca i Tecnologia Agroalimentàries) ; Carbó Pericay, Joaquim (Institut de Recerca i Tecnologia Agroalimentàries) ; Wang, Li-rong (Zhenzhou Fruit Research Institut) ; Ma, Rui-juan (Jiangsu Academy of Agricultural Sciences) ; Li, Xiong-wei (Zhejiang University. Department of Horticulture) ; Gao, Zhong-shan (Zhejiang University. Department of Horticulture) ; Nazzicari, Nelson (Parco Tecnologico Padano) ; Troggio, Michela (Fondazione Edmund Mach. Centro Ricerca e Innovazione) ; Bassi, Daniele (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ; Rossini, Laura (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ; Verde, Ignazio (Centro di Ricerca per la Frutticoltura) ; Laurens, François (Institut national de la recherche agronomique (França). Institut de Recherche en Horticulture et Semences) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Aranzana Civit, Mª José (Centre de Recerca en Agrigenòmica)
Peach was domesticated in China more than four millennia ago and from there it spread world-wide. Since the middle of the last century, peach breeding programs have been very dynamic generating hundreds of new commercial varieties, however, in most cases such varieties derive from a limited collection of parental lines (founders). [...]
2015 - 10.1371/journal.pone.0136803
PloS one, Vol. 10, issue 9 (Setember 2015) , e0136803  

See also: similar author names
1 Troggio, M.
1 Troggio, Micheli
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