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16 p, 1.6 MB |
Differential Impact of Forest Fragmentation on Fluctuating Asymmetry in South Amazonian Small Mammals
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Castilheiro, W. F. F. (Universidade de Lisboa. Departamento de Biologia) ;
Muñoz Muñoz, Francesc (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Santos-Filho, Manoel Dos (Universidade do Estado de Mato Grosso) ;
Mathias, Maria da Luz (Universidade de Lisboa. Departamento de Biologia) ;
Gabriel, Sofia I. (Universidade de Aveiro. Departamento de Biologia)
(1) Background: Southern Amazonia encompasses some of the most human-impacted and deforested regions of South America, resulting in a hyper-fragmented landscape. In this context, by using a geometric morphometrics approach, we aimed to examine the effect of forest fragmentation on developmental instability (DI) of the mandible, assessed by variation of fluctuating asymmetry (FA), in four neotropical small mammal species inhabiting the municipality of Alta Floresta (Brazil). [...]
2022 -  10.3390/sym14050981
Symmetry, Vol. 14, Issue 5 (May 2022) , art. 981
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2.
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11 p, 1.5 MB |
Divergence time estimation using ddRAD data and an isolation-with-migration model applied to water vole populations of Arvicola
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Balmori-de la Puente, Alfonso (Institut de Biologia Evolutiva) ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d’Ecologia) ;
Miñarro, Marcos (Servicio Regional de Investigación y Desarrollo Agroalimentario) ;
Somoano, Aitor (Servicio Regional de Investigación y Desarrollo Agroalimentario) ;
Hey, Jody (Temple University) ;
Castresana, Jose (Institut de Biologia Evolutiva)
Molecular dating methods of population splits are crucial in evolutionary biology, but they present important difficulties due to the complexity of the genealogical relationships of genes and past migrations between populations. [...]
2022 - 10.1038/s41598-022-07877-y
Scientific reports, Vol. 12 (March 2022) , art. 4065
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3.
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17 p, 7.4 MB |
The impact of chromosomal fusions on 3D genome folding and recombination in the germ line
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Vara González, Covadonga (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Paytuví-Gallart, Andreu (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia) ;
Cuartero, Yasmina (Centre de Regulació Genòmica) ;
Álvarez-González, Lucía (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Marin Gual, Laia (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia) ;
García, Francisca (Universitat Autònoma de Barcelona. Servei de Cultius Cel·lulars, Producció d'Anticossos i Citometria) ;
Florit-Sabater, Beatriu (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Capilla, Laia (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Sanchéz-Guillén, Rosa Ana (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Sarrate Navas, Zaida (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia) ;
Aiese Cigliano, Riccardo (Sequentia Biotech) ;
Sanseverino, Walter (Sequentia Biotech) ;
Searle, Jeremy B. (Cornell University. Department of Ecology and Evolutionary Biology) ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Marti-Renom, Marc A. (Institució Catalana de Recerca i Estudis Avançats) ;
Le Dily, François (Centre de Regulació Genòmica) ;
Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
The spatial folding of chromosomes inside the nucleus has regulatory effects on gene expression, yet the impact of genome reshuffling on this organization remains unclear. Here, we take advantage of chromosome conformation capture in combination with single-nucleotide polymorphism (SNP) genotyping and analysis of crossover events to study how the higher-order chromatin organization and recombination landscapes are affected by chromosomal fusions in the mammalian germ line. [...]
2021 - 10.1038/s41467-021-23270-1
Nature communications, Vol. 12 (May 2021) , art. 2981
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4.
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21 p, 9.8 MB |
Cardiac, mandibular and thymic phenotypical association indicates that cranial neural crest underlies bicuspid aortic valve formation in hamsters
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Martínez Vargas, Jessica (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Machuca, Ángela (Universidad de Málaga. Departamento de Biología Animal) ;
Muñoz Muñoz, Francesc (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Fernández, María Carmen (Instituto de Investigación Biomédica de Málaga) ;
Soto-Navarrete, María Teresa (Universidad de Málaga. Departamento de Biología Animal) ;
Durán, Ana Carmen (Instituto de Investigación Biomédica de Málaga) ;
Fernández, Borja (Centro de Investigación Biomédica en Red en Enfermedades Cardiovasculares)
Bicuspid aortic valve (BAV) is the most prevalent human congenital cardiac malformation. It may appear isolated, associated with other cardiovascular malformations, or forming part of syndromes. Cranial neural crest (NC) defects are supposed to be the cause of the spectrum of disorders associated with syndromic BAV. [...]
2017 - 10.1371/journal.pone.0183556
PloS one, Vol. 12 (Sep. 2017) , art. e0183556
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15 p, 1.3 MB |
PRDM9 diversity at fine geographical scale reveals contrasting evolutionary patterns and functional constraints in natural populations of house mice
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Vara González, Covadonga (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Capilla Pérez, Laia (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Ferretti, Luca (University of Oxford. Big Data Institute) ;
Ledda, Alice (Imperial College London. Department for Infectious Disease Epidemiology) ;
Sánchez Guillén, Rosa Ana (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Gabriel, Sofia I. (Universidade de Lisboa. Centro de Estudos do Ambiente e do Mar) ;
Albert Lizandra, Guillermo (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Florit Sabater, Beatriu (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Bello Rodríguez, Judith (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Searle, Jeremy B. (Cornell University. Department of Ecology and Evolutionary Biology) ;
Mathias, Maria L. (Universidade de Lisboa. Centro de Estudos do Ambiente e do Mar) ;
Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia)
One of the major challenges in evolutionary biology is the identification of the genetic basis of postzygotic reproductive isolation. Given its pivotal role in this process, here we explore the drivers that may account for the evolutionary dynamics of the PRDM9 gene between continental and island systems of chromosomal variation in house mice. [...]
2019 - 10.1093/molbev/msz091
Molecular biology and evolution, Vol. 36 Núm. 8 (january 2019) , p. 1686-1700
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5 p, 2.5 MB |
Datos sobre la estructura poblacional de Arvicola sapidus Miller, 1908 (Rodentia : Arvicolidae) del Delta del Ebro
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Ventura Queija, Jacinto (Universitat de Barcelona. Departament de Biologia Animal) ;
Gosálbez i Noguera, Joaquim (Universitat de Barcelona. Departament de Biologia Animal)
Se aportan datos sobre la estructura poblacional de Arvicola sapidus del Delta del Ebro (Tarragona ), segun el mes de captura , la edad relativa y la relacion de sexos . La muestra estudiada ha sido de 135 ejemplares (75 dd, 60 99) capturados entre 1980 y 1984 . [...]
Data on population structure of Arvicola sapidus from the Ebro Delta (Tarragona, Spain), according to the month of capture, relative age and sex ratio, are given. 135 specimens (75 dd, 60 gp) captured between 1980 and 1984 were analyzed. [...]
S'aporten dades sobre I'estructura poblacional d'Arvicola sapidus del delta de I'Ebre, segons el mes de captura , I'edat relativa i la relacio de sexes . La mostra estudiada ha estat de 135 exemplars (75 dd, 60 99) capturats entre 1980 i 1984. [...]
1992
Butlletí de la Institució Catalana d'Història Natural, Núm. 60 (1992) , p. 133-137
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15 p, 962.2 KB |
Mammalian comparative genomics reveals genetic and epigenetic features associated with genome reshuffling in Rodentia
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Capilla Pérez, Laia (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Sánchez-Guillén, Rosa Ana (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Farré, Marta (Instituto de Ecología A.C (Mèxic)) ;
Paytuví-Gallart, Andreu (Sequentia Biotech S.L.) ;
Malinverni, Roberto (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia) ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Larkin, Denis M. (Instituto de Ecología A.C (Mèxic)) ;
Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Understanding how mammalian genomes have been reshuffled through structural changes is fundamental to the dynamics of its composition, evolutionary relationships between species and, in the long run, speciation. [...]
2016 - 10.1093/gbe/evw276
Genome biology and evolution, Vol. 8, issue 12 (Des. 2016) , p. 3703-3717
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15 p, 1.0 MB |
R2d2 drives selfish sweeps in the house mouse
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Didion, John P. (Carolina Center for Genome Science) ;
Morgan, Andrew P. (Carolina Center for Genome Science) ;
Yadgary, Liran (Carolina Center for Genome Science) ;
Bell, Timothy A. (Carolina Center for Genome Science) ;
McMullan, Rachel C. (Carolina Center for Genome Science) ;
Ortiz de Solorzano, Lydia (Carolina Center for Genome Science) ;
Britton-Davidian, Janice (Université de Montpellier. Institut des Sciences de l'Evolution) ;
Bult, Carol J. (The Jackson Laboratory) ;
Campbell, Karl J. (The University of Queensland. School of Geography, Planning & Environmental Management) ;
Castiglia, Riccardo (Università degli studi di Roma "La Sapienza") ;
Ching, Yung-Hao (Tzu Chi University. Department of Molecular Biology and Human Genetics) ;
Chunco, Amanda J. (Elon University. Department of Environmental Studies) ;
Crowley, James J. (The University of North Carolina at Chapel Hill. Department of Genetics) ;
Chesler, Elissa J. (The Jackson Laboratory) ;
Förster, Daniel W. (Leibniz-Institut für Zoo- und Wildtierforschung. Department of Evolutionary Genetics) ;
French, John E. (National Institute of Environmental Health Sciences. National Toxicology Program) ;
Gabriel, Sofia I. (Universidade de Lisboa. Department of Animal Biology) ;
Gatti, Daniel M. (The Jackson Laboratory) ;
Garland, Theodore (University of California, Riverside. Department of Biology) ;
Giagia-Athanasopoulou, Eva B. (University of Patras. Department of Biology) ;
Giménez, Mabel D. (Universidad Nacional de Misiones (Argentina). Instituto de Biología Subtropical) ;
Grize, Sofia A. (Universität Zürich. Institute of Evolutionary Biology and Environmental Studies) ;
Gündüz, İslam (University of Ondokuz Mayis. Department of Biology, Faculty of Arts and Sciences) ;
Holmes, Andrew (National Institutes of Health. National Institute on Alcohol Abuse and Alcoholism) ;
Hauffe, Heidi C. (Fondazione Edmund Mach. Department of Biodiversity and Molecular Ecology, Research and Innovation Centre) ;
Herman, Jeremy S. (National Museums Scotland. Department of Natural Sciences) ;
Holt, James M. (The University of North Carolina at Chapel Hill. Department of Computer Science) ;
Hua, Kunjie (The University of North Carolina at Chapel Hill. Department of Genetics) ;
Jolley, Wesley J. (Island Conservation (Santa Cruz, Califòrnia)) ;
Lindholm, Anna K. (Universität Zürich. Institute of Evolutionary Biology and Environmental Studies) ;
López-Fuster, María J. (Universitat de Barcelona. Facultat de Biologia) ;
Mitsainas, George (University of Patras. Department of Biology) ;
da Luz Mathias, Maria (Universidade de Lisboa. Department of Animal Biology) ;
McMillan, Leonard (The University of North Carolina at Chapel Hill. Department of Computer Science) ;
Ramalhinho, Maria da Graça Morgado (Universidade de Lisboa. Department of Animal Biology) ;
Rehermann, Barbara (National Institute of Diabetes and Digestive and Kidney Diseases (Bethesda, Estats Units d'Amèrica)) ;
Rosshart, Stephan P. (National Institute of Diabetes and Digestive and Kidney Diseases (Bethesda, Estats Units d'Amèrica)) ;
Searle, Jeremy B. (Cornell University. Department of Ecology and Evolutionary Biology) ;
Shiao, Meng-Shin (Mahidol University. Faculty of Medicine) ;
Solano, Emanuela (Università degli studi di Roma "La Sapienza") ;
Svenson, Karen L. (The Jackson Laboratory) ;
Thomas-Laemont, Patricia (Elon University. Department of Environmental Studies) ;
Threadgill, David W. (Texas A&M University. Department of Molecular and Cellular Medicine) ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Weinstock, George M. (Jackson Laboratory for Genomic Medicine) ;
Pomp, Daniel (Carolina Center for Genome Science) ;
Churchill, Gary A. (The Jackson Laboratory) ;
Pardo-Manuel de Villena, Fernando (Carolina Center for Genome Science)
A selective sweep is the result of strong positive selection driving newly occurring or standing genetic variants to fixation, and can dramatically alter the pattern and distribution of allelic diversity in a population. [...]
2016 - 10.1093/molbev/msw036
Molecular biology and evolution, Vol. 33, issue 6 (June 2016) , p. 1381-1395
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17 p, 308.0 KB |
Staggered chromosomal hybrid zones in the house mouse : relevance to reticulate evolution and speciation
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Gündüz, İslam (University of York. Department of Biology) ;
Pollock, Christianne L. (University of York. Department of Biology) ;
Giménez, Mabel D. (University of York. Department of Biology) ;
Förster, Daniel W. (Durham University. School of Biological and Biomedical Sciences) ;
White, Thomas A. (Durham University. School of Biological and Biomedical Sciences) ;
Sans-Fuentes, Maria A. (Universitat de Barcelona. Departament de Biologia Animal) ;
Hauffe, Heidi C. (University of York. Department of Biology) ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
López-Fuster, María José (Universitat de Barcelona. Departament de Biologia Animal) ;
Searle, Jeremy B. (University of York. Department of Biology)
In the house mouse there are numerous chromosomal races distinguished by different combinations of metacentric chromosomes. These may come into contact with each other and with the ancestral all-acrocentric race, and form hybrid zones. [...]
2010 - 10.3390/genes1020193
Genes, Vol. 1, issue 2 (Sep. 2010) , p. 193-209
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