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18 p, 2.3 MB |
Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes
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Pfrengle, Saskia (University of Tübingen. Institute of Evolutionary Medicine) ;
Neukamm, Judith (University of Tübingen. Institute for Archaeological Sciences) ;
Guellil, Meriam (University of Tartu. Estonian Biocentre, Institute of Genomics) ;
Keller, Marcel (University of Tartu. Institute of Genomics) ;
Molak, Martyna (University of Warsaw. Centre of New Technologies) ;
Avanzi, Charlotte (Colorado State University. Department of Microbiology, Immunology and Pathology) ;
Kushniarevich, Alena (University of Tartu. Institute of Genomics) ;
Montes, Núria (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Neumann, Gunnar U. (Max Planck Institute for the Science of Human History) ;
Reiter, Ella (University of Tübingen. Institute for Archaeological Sciences) ;
Tukhbatova, Rezeda I. (Max Planck Institute for the Science of Human History) ;
Berezina, Nataliya Y. (Moscow State University. Research Institute and Museum of Anthropology) ;
Buzhilova, Alexandra P. (Moscow State University. Research Institute and Museum of Anthropology) ;
Korobov, Dmitry S. (Russian Academy of Sciences. Institute of Archaeology) ;
Suppersberger Hamre, Stian (University of Bergen. Department of Archaeology, History, Cultural studies and religion) ;
Matos, Vitor M. J. (University of Coimbra. Department of Life Sciences) ;
Ferreira, Maria T. (Universidad de León. Departamento de Biodiversidad y Gestión Ambiental) ;
González-Garrido, Laura (Universidad de León. Departamento de Biodiversidad y Gestión Ambiental) ;
Wasterlain, Sofia N. (University of Coimbra. Department of Life Sciences) ;
Lopes, Célia (University of Coimbra. Department of Life Sciences) ;
Santos, Ana Luisa (University of Coimbra. Department of Life Sciences) ;
Antunes-Ferreira, Nathalie (Instituto Universitário Egas Moniz) ;
Duarte, Vitória (University of Coimbra. Department of Life Sciences) ;
Silva, Ana Maria (University of Coimbra. Department of Life Sciences) ;
Melo, Linda (University of Coimbra. Department of Life Sciences) ;
Sarkic, Natasa (OSTEO Research) ;
Saag, Lehti (University of Tartu. Institute of Genomics) ;
Tambets, Kristiina (University of Tartu. Institute of Genomics) ;
Busso, Philippe (Ecole Polytechnique Fédérale de Lausanne. Global Health Institute) ;
Cole, Stewart T. (Ecole Polytechnique Fédérale de Lausanne. Global Health Institute) ;
Avlasovich, Alexei (Mogilev State A. Kuleshov University. Department of Archeology, History of Belarus and Special Historical Disciplines) ;
Roberts, Charlotte A. (Durham University. Department of Archaeology) ;
Sheridan, Alison (National Museums Scotland. Department of Scottish History and Archaeology) ;
Cessford, Craig (University of Cambridge. Department of Archaeology) ;
Robb, John (University of Cambridge. Department of Archaeology) ;
Krause, Johannes (University of Tübingen. Institute for Archaeological Sciences) ;
Scheib, Christiana L. (University of Cambridge. St John's College) ;
Inskip, Sarah A. (University of Leicester. School of Archaeology and Ancient History) ;
Schuenemann, Verena J. (University of Tübingen. Senckenberg Centre for Human Evolution and Paleoenvironments)
Hansen's disease (leprosy), widespread in medieval Europe, is today mainly prevalent in tropical and subtropical regions with around 200,000 new cases reported annually. Despite its long history and appearance in historical records, its origins and past dissemination patterns are still widely unknown. [...]
2021 -  10.1186/s12915-021-01120-2
BMC biology, Vol. 19 (2021) , art. 220
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18 p, 526.3 KB |
The last of the large-sized tortoises of the Mediterranean islands
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Valenti, Pietro (Università degli Studi di Palermo. Dipartimento STEBICEF) ;
Vlachos, Evangelos (Museo Paleontologico Egidio Feruglio (Argentina)) ;
Kehlmaier, Christian (Museum of Zoology (Dresden, Germany)) ;
Fritz, Uwe (Museum of Zoology (Dresden, Germany)) ;
Georgalis, Georgios (Università di Torino. Dipartimento di Scienze della Terra) ;
Hernández Luján, Àngel (Institut Català de Paleontologia Miquel Crusafont) ;
Micciche, Roberto (Università degli Studi di Palermo. Dipartimento STEBICEF) ;
Sineo, Luca (Università degli Studi di Palermo. Dipartimento STEBICEF) ;
Delfino, Massimo (Institut Català de Paleontologia Miquel Crusafont)
Archaeological investigations carried out in the cave Zubbio di Cozzo San Pietro, Bagheria, Sicily, revealed the presence of a few skeletal elements of a large-sized tortoise in a funerary area dating to the Copper/Bronze Age. [...]
2022 - 10.1093/zoolinnean/zlac044
Zoological Journal of the Linnean Society, Vol. 196, Issue 4 (December 2022) , p. 1704-1717
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26 p, 17.4 MB |
High-depth African genomes inform human migration and health
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Choudhury, Ananyo (University of the Witwatersrand) ;
Aron, S. (University of the Witwatersrand) ;
Botigué, Laura (Centre de Recerca en Agrigenòmica) ;
Sengupta, D. (University of the Witwatersrand) ;
Botha, G. (University of Cape Town) ;
Bensellak, T. (Abdelmalek Essaadi University) ;
Wells, G. (University of the Western Cape) ;
Kumuthini, J. (University of the Western Cape) ;
Shriner, Daniel (National Institutes of Health (USA)) ;
Fakim, Y. J. (University of Mauritius) ;
Ghoorah, A. W. (University of Mauritius) ;
Dareng, E. (Institute of Human Virology Nigeria) ;
Odia, T. (Covenant University) ;
Falola, O. (Covenant University) ;
Adebiyi, E. (Covenant University) ;
Hazelhurst, S. (University of the Witwatersrand) ;
Mazandu, G. (University of Cape Town) ;
Nyangiri, O. A. (Makerere University) ;
Mbiyavanga, M. (University of Cape Town) ;
Benkahla, A. (Institute Pasteur of Tunis) ;
Kassim, S. K. (Ain Shams University (El Caire, Egipte)) ;
Mulder, N. (University of Cape Town) ;
Adebamowo, S. N. (University of Maryland Baltimore) ;
Chimusa, E. R. (University of Cape Town) ;
Muzny, D. (Baylor College of Medicine) ;
Metcalf, G. (Baylor College of Medicine) ;
Gibbs, R. A. (Baylor College of Medicine) ;
Rotimi, C. (National Institutes of Health (USA)) ;
Ramsay, M. (University of the Witwatersrand) ;
Adeyemo, Adebowale A (National Institutes of Health (USA)) ;
Lombard, Z. (University of the Witwatersrand) ;
Hanchard, N. A. (Baylor College of Medicine) ;
TrypanoGEN Research Group ;
H3Africa Consortium
The African continent is regarded as the cradle of modern humans and African genomes contain more genetic variation than those from any other continent, yet only a fraction of the genetic diversity among African individuals has been surveyed. [...]
2020 - 10.1038/s41586-020-2859-7
Nature, Vol. 586 (October 2020) , p. 741-748
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5 p, 650.3 KB |
HuConTest : Testing Human Contamination in Great Ape Samples
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Kuhlwilm, Martin (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Fontsere, Claudia (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Han, Sojung 1984- (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Alvarez-Estape, Marina (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont)
Modern human contamination is a common problem in ancient DNA studies. We provide evidence that this issue is also present in studies in great apes, which are our closest living relatives, for example in noninvasive samples. [...]
2021 - 10.1093/gbe/evab117
Genome biology and evolution, Vol. 13, Issue 6 (June 2021) , art. evab117
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6 p, 698.6 KB |
Genetic data from the extinct giant rat from Tenerife (Canary Islands) points to a recent divergence from mainland relatives
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Renom, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Civit, Sergi (Universitat de Barcelona. Institut de Recerca de la Biodiversitat (IRBio)) ;
Llovera, Laia (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Sánchez-Gracia, Alejandro (Universitat de Barcelona. Institut de Recerca de la Biodiversitat (IRBio)) ;
Lizano, Esther (Institut Català de Paleontologia Miquel Crusafont) ;
Rando, Juan Carlos (Universidad de La Laguna. Departamento de Biología Animal, Edafología y Geología) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Kergoat, Gael (Université de Montpellier) ;
Casanovas i Vilar, Isaac (Institut Català de Paleontologia Miquel Crusafont) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Evolution of vertebrate endemics in oceanic islands follows a predictable pattern, known as the island rule, according to which gigantism arises in originally small-sized species and dwarfism in large ones. [...]
2021 - 10.1098/rsbl.2021.0533
Biology letters, Vol. 17, Issue 12 (December 2021) , art. 20210533
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14 p, 1.8 MB |
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
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Barnett, Ross (University of Copenhagen. Section for Evolutionary Genomics) ;
Westbury, Michael V. (University of Copenhagen. Section for Evolutionary Genomics) ;
Sandoval-Velasco, Marcela (University of Copenhagen. Section for Evolutionary Genomics) ;
Garrett Vieira, Filipe (University of Copenhagen. Section for Evolutionary Genomics) ;
Jeon, Sungwon (Ulsan National Institute of Science and Technology. Department of Biomedical Engineering) ;
Zazula, Grant (Government of Yukon. Yukon Palaeontology Program) ;
Martin, Michael (Norwegian University of Science and Technology. Department of Natural History) ;
Ho, Simon Y. W. (University of Sydney. School of Life and Environmental Sciences) ;
Mather, Niklas (University of Sydney. School of Life and Environmental Sciences) ;
Gopalakrishnan, Shyam (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Ramos-Madrigal, Jazmín (University of Copenhagen. Center for Evolutionary Hologenomics) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Zepeda Mendoza, Marie Lisandra (University of Birmingham. Institute of Microbiology and Infection) ;
Antunes, Agostinho (University of Porto. Department of Biology) ;
Baez, Aldo Carmon (University of Copenhagen. Section for Evolutionary Genomics) ;
De Cahsan, Binia (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Larson, Greger (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
O'Brien, Stephen J. (Nova Southeastern University. Guy Harvey Oceanographic Center) ;
Eizirik, Eduardo (Instituto Pró-Carnívoros) ;
Johnson, Warren E. (Walter Reed Army Institute of Research) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute. Center for Species Survival) ;
Wilting, Andreas (Leibniz Institute for Zoo and Wildlife Research) ;
Fickel, Jöms (University of Potsdam. Institute for Biochemistry and Biology) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics) ;
Lorenzen, Eline D. (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Hansen, Anders J. (University of Copenhagen. Section for GeoGenetics) ;
Zhang, Guojie (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Bhak, Jong (Personal Genomics Institute. Genome Research Foundation) ;
Yamaguchi, Nobuyuki (Universiti Malaysia Terengganu. Institute of Tropical Biodiversity and Sustainable Development) ;
Gilbert, M. Thomas P. (University of Copenhagen. Center for Evolutionary Hologenomics)
Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine teeth, powerful forelimbs, a sloping back, and an enlarged optic bulb, all of which were key characteristics for predation on Pleistocene megafauna [5]. [...]
2020 - 10.1016/j.cub.2020.09.051
Current Biology, Vol. 30, Issue 24 (December 2020) , p. ages 5018-5025.e5
2 documentos
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21 p, 2.4 MB |
Differential DNA methylation of vocal and facial anatomy genes in modern humans
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Gokhman, David (The Hebrew University of Jerusalem. The Alexander Silberman Institute of Life Sciences. Department of Genetics (Israel)) ;
Nissim-Rafinia, Malka (The Hebrew University of Jerusalem. The Alexander Silberman Institute of Life Sciences. Department of Genetics (Israel)) ;
Agranat-Tamir, Lily (The Hebrew University of Jerusalem. Department of Statistics (Israel)) ;
Housman, Genevieve (Arizona State University. Center for Evolution and Medicine (USA)) ;
García Perez, Raquel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Lizano, Esther (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Cheronet, Olivia (University of Vienna. Department of Evolutionary Anthropology (Austria)) ;
Mallick, Swapan (Howard Hughes Medical Institute. Harvard Medical School (USA)) ;
Nieves-Colón, Maria A. (Arizona State University. Center for Evolution and Medicine (USA)) ;
Li, Heng (Broad Institute of MIT and Harvard) ;
Alpaslan-Roodenberg, Songül (Harvard Medical School. Department of Genetics (USA)) ;
Novak, Mario (University College Dublin. Earth Institute and School of Archaeology (Ireland)) ;
Gu, Hongcang (Broad Institute of MIT and Harvard) ;
Osinski, Jason M. (University at Buffalo. Jacobs School of Medicine and Biomedical Sciences. Department of Biochemistry (USA)) ;
Ferrando-Bernal, Manuel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Gelabert, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Lipende, Iddi (Jane Goodall Institute. Gombe Stream Research Center (Tanzania)) ;
Mjungu, Deus (Jane Goodall Institute. Gombe Stream Research Center (Tanzania)) ;
Kondova, Ivanela (Biomedical Primate Research Centre (Netherlands)) ;
Bontrop, Ronald (Biomedical Primate Research Centre (Netherlands)) ;
Kullmer, Ottmar (Senckenberg Center of Human Evolution and Paleoecology. Department of Palaeoanthropology and Messel Research (Germany)) ;
Weber, Gerhard (University of Vienna. Department of Evolutionary Anthropology (Austria)) ;
Shahar, Tal (Shaare Zedek Medical Center. Department of Neurosurgery (Israel)) ;
Dvir-Ginzberg, Mona (Hebrew University of Jerusalem. Institute of Dental Sciences. Laboratory of Cartilage Biology (Israel)) ;
Faerman, Marina (Hebrew University of Jerusalem. Institute of Dental Sciences. Laboratory of Bioanthropology and Ancient DNA (Israel)) ;
Quillen, Ellen E. (Texas Biomedical Research Institute. Department of Genetics (USA)) ;
Meissner, Alexander (Harvard University. Department of Stem Cell and Regenerative Biology (USA)) ;
Lahav, Yonatan (The Hebrew University Medical School (Israel)) ;
Kandel, Leonid (Hadassah - Hebrew University Medical Center. Orthopaedic Department (Israel)) ;
Liebergall, Meir (Hadassah - Hebrew University Medical Center. Orthopaedic Department (Israel)) ;
Prada, María E. (I.E.S.O. 'Los Salados'. Junta de Castilla y León) ;
Vidal, Julio M. (Junta de Castilla y León. Servicio de Cultura de León) ;
Gronostajski, Richard M. (University at Buffalo. Jacobs School of Medicine and Biomedical Sciences. Department of Biochemistry (USA)) ;
Stone, Anne C. (Arizona State University. Institute of Human Origins) ;
Yakir, Benjamin (The Hebrew University of Jerusalem. Department of Statistics (Israel)) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Pinhasi, Ron (University of Vienna. Department of Evolutionary Anthropology (Austria)) ;
Reich, David (Howard Hughes Medical Institute. Harvard Medical School (USA)) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Meshorer, Eran (The Hebrew University of Jerusalem. The Edmond and Lily Safra Center for Brain Sciences (Israel)) ;
Carmel, Liran (The Hebrew University of Jerusalem. The Alexander Silberman Institute of Life Sciences. Department of Genetics (Israel))
Changes in potential regulatory elements are thought to be key drivers of phenotypic divergence. However, identifying changes to regulatory elements that underlie human-specific traits has proven very challenging. [...]
2020 - 10.1038/s41467-020-15020-6
Nature communications, Vol. 11 (March 2020) , art. 1189
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15 p, 726.6 KB |
Inference of natural selection from ancient DNA
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Dehasque, Marianne (Stockholm University) ;
Ávila-Arcos, Maria C. (UNAM Juriquilla) ;
Díez, David (Stockholm University) ;
Fumagalli, Matteo (Imperial College London) ;
Guschanski, Katerina (Uppsala University) ;
Lorenzen, Eline (University of Copenhagen) ;
Malaspinas, Anna-Sapfo (University of Lausanne. SIB Swiss Institute of Bioinformatics) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Martin, Michael (Norwegian University of Science and Technology) ;
Murray, Gemma G. R. (University of Cambridge) ;
Papadopulos, Alexander S. T. (Bangor University) ;
Therkildsen, Nina Overgaard (Cornell University) ;
Wegmann, Daniel (Swiss Institute of Bioinformatics) ;
Dalén, Love (Swedish Museum of Natural History) ;
Foote, Andrew D. (Bangor University)
Evolutionary processes, including selection, can be indirectly inferred based on patterns of genomic variation among contemporary populations or species. However, this often requires unrealistic assumptions of ancestral demography and selective regimes. [...]
2020 - 10.1002/evl3.165
Evolution Letters, Vol. 4, Issue 2 (April 2020) , p. 94-108
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13 p, 1.5 MB |
Plasmodium vivax Malaria viewed through the lens of an eradicated European strain
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van Dorp, Lucy (University College London. UCL Genetics Institute (UK)) ;
Gelabert Xirinachs, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Rieux, Adrien (Coopération Internationale en Recherche Agronomique pour le Développement (France)) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Carøe, Christian (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Sandoval Velasco, Marcela (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Fregel, Rosa (Universidad de La Laguna. Departamento de Bioquímica, Microbiología, Biología Celular y Genética) ;
Olalde, Iñigo (Harvard Medical School. Department of Genetics (USA)) ;
Escosa, Raúl (Consorci de Polítiques Ambientals de les Terres de l'Ebre) ;
Aranda Pallero, Carles (Consell Comarcal del Baix Llobregat. Servei de Control de Mosquits) ;
Huijben, Silvie (Barcelona Institute for Global Health (ISGlobal)) ;
Mueller, Ivo (Barcelona Institute for Global Health (ISGlobal)) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Balloux, François (University College London. UCL Genetics Institute (UK)) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
The protozoan Plasmodium vivax is responsible for 42% of all cases of malaria outside Africa. The parasite is currently largely restricted to tropical and subtropical latitudes in Asia, Oceania, and the Americas. [...]
2020 - 10.1093/molbev/msz264
Molecular biology and evolution, Vol. 37, Issue 3 (March 2020) , p. 773-785
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