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Articles, 14 records found
Articles 14 records found  1 - 10next  jump to record:
1.
13 p, 1.5 MB Plasmodium vivax Malaria viewed through the lens of an eradicated European strain / van Dorp, Lucy (University College London. UCL Genetics Institute (UK)) ; Gelabert Xirinachs, Pere (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Rieux, Adrien (Coopération Internationale en Recherche Agronomique pour le Développement (France)) ; de Manuel, Marc (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; de Dios, Toni (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute (Denmark)) ; Carøe, Christian (University of Copenhagen. The GLOBE Institute (Denmark)) ; Sandoval Velasco, Marcela (University of Copenhagen. The GLOBE Institute (Denmark)) ; Fregel, Rosa (Universidad de La Laguna. Departamento de Bioquímica, Microbiología, Biología Celular y Genética) ; Olalde, Iñigo (Harvard Medical School. Department of Genetics (USA)) ; Escosa, Raül (Consorci de Polítiques Ambientals de les Terres de l'Ebre) ; Aranda, Carles (Consell Comarcal del Baix Llobregat. Servei de Control de Mosquits) ; Huijben, Silvie (Hospital Clínic-Universitat de Barcelona. ISGlobal Institut de Salut Global de Barcelona) ; Mueller, Ivo (Hospital Clínic-Universitat de Barcelona. ISGlobal Institut de Salut Global de Barcelona) ; Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ; Balloux, François (University College London. UCL Genetics Institute (UK)) ; Gilbert, M Thomas P (University of Copenhagen. The GLOBE Institute (Denmark)) ; Lalueza-Fox, Carles (Universitat Pompeu Fabra. Institut de Biologia Evolutiva)
The protozoan Plasmodium vivax is responsible for 42% of all cases of malaria outside Africa. The parasite is currently largely restricted to tropical and subtropical latitudes in Asia, Oceania, and the Americas. [...]
2020 - 10.1093/molbev/msz264
Molecular biology and evolution, Vol. 37, Issue 3 (March 2020) , p. 773-785  
2.
28 p, 2.6 MB Functional impact and evolution of a novel human polymorphic inversion that disrupts a gene and creates a fusion transcript / Puig Font, Marta (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Castellano Esteve, David (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Pantano, Lorena (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Giner Delgado, Carla (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Izquierdo, David (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Gayà Vidal, Magdalena (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Lucas Lledó, Jose Ignacio (Universitat de València. Institut Cavanilles de Biologia Evolutiva i Biodiversitat) ; Esko, Tõnu (Estonian Genome Center) ; Terao, Chikashi (Kyoto University Graduate School of Medicine) ; Matsuda, Fumihiko (Center for Genomic Medicine. Kyoto University Graduate School of Medicine) ; Cáceres Aguilar, Mario (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Despite many years of study into inversions, very little is known about their functional consequences, especially in humans. A common hypothesis is that the selective value of inversions stems in part from their effects on nearby genes, although evidence of this in natural populations is almost nonexistent. [...]
2015 - 10.1371/journal.pgen.1005495
PLoS Genetics, Vol. 11, issue 10 (2015) , art. e1005495  
3.
14 p, 1.8 MB Evolutionary and functional impact of common polymorphic inversions in the human genome / Giner Delgado, Carla (Universitat Autònoma de Barcelona. Departament de Genètica i Microbiologia) ; Villatoro, Sergi (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Lerga Jaso, Jon (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Gayà Vidal, Magdalena (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Oliva Pavía, Meritxell (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Castellano Esteve, David (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Pantano, Lorena (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Bitarello, Bárbara D. (Max-Planck-Institut für Evolutionäre Anthropologie) ; Izquierdo, David (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Noguera, Isaac (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Olalde, Iñigo (Institut de Biologia Evolutiva (UPF CSIC)) ; Delprat, Alejandra (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Blancher, Antoine (Centre de Physiopathologie Toulouse-Purpan) ; Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF CSIC)) ; Esko, Tõnu (Estonian Genome Center) ; O'Reilly, Paul F. (King's College London. Institute of Psychiatry, Psychology and Neuroscience) ; Andrés, Aida M. (Max-Planck-Institut für Evolutionäre Anthropologie) ; Ferretti, Luca (University of Oxford. Big Data Institute) ; Puig Font, Marta (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Cáceres Aguilar, Mario (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Inversions are one type of structural variants linked to phenotypic differences and adaptation in multiple organisms. However, there is still very little information about polymorphic inversions in the human genome due to the difficulty of their detection. [...]
2019 - 10.1038/s41467-019-12173-x
Nature communications, Vol. 10 (2019) , art. 4222  
4.
10 p, 3.7 MB PopHumanScan : the online catalog of human genome adaptation / Murga Moreno, Jesús (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Coronado-Zamora, Marta (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Bodelón, Alejandra (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Casillas Viladerrams, Sònia (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasi")
Since the migrations that led humans to colonize Earth, our species has faced frequent adaptive challenges that have left signatures in the landscape of genetic variation and that we can identify in our today-s genomes. [...]
2019 - 10.1093/nar/gky959
Nucleic acids research, Vol. 47, issue D1 (Jan 2019) , p. D1080-D1089  
5.
12 p, 2.8 MB Genome-wide patterns of homozygosity provide clues about the population history and adaptation of goats / Bertolini, Francesca (Iowa State University. Department of Animal Science) ; Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ; Marras, Gabriele (Fondazione Parco Tecnologico Padano) ; Nicolazzi, Ezequiel L. (Fondazione Parco Tecnologico Padano (PTP)) ; Rothschild, Max F. (Iowa State University. Department of Animal Science) ; Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
Background: Patterns of homozygosity can be influenced by several factors, such as demography, recombination, and selection. Using the goat SNP50 BeadChip, we genotyped 3171 goats belonging to 117 populations with a worldwide distribution. [...]
2018 - 10.1186/s12711-018-0424-8
Genetics, selection, evolution, Vol. 50 (2018) , art. 59  
6.
10 p, 1.6 MB Fluctuating selection on migrant adaptive sodium transporter alleles in coastal Arabidopsis thaliana / Busoms González, Sílvia (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ; Paajanen, Pirita (John Innes Centre. Department of Cell and Developmental Biology) ; Marburger, Sarah (John Innes Centre. Department of Cell and Developmental Biology) ; Bray, Sian (John Innes Centre. Department of Cell and Developmental Biology,) ; Huang, Xin-Yuan (Nanjing Agricultural University. State Key Laboratory of Crop Genetics and Germplasm Enhancement) ; Poschenrieder, Charlotte (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ; Yant, Levi (University of Nottingham. School of Life Sciences) ; Salt, David E. (University of Nottingham. Division of Plant and Crop Sciences)
The natural landscape contains a highly heterogeneous array of environments that drive the adaptive differentiation of populations, including adaptation to elevated salinity. Our research emphasizes an integrated genetic, physiological, and ecological approach to understand the role of naturally evolved high-affinity K + transporter (HKT1;1) allelic variants in the adaptation of Arabidopsis thaliana populations to fluctuating salinity dynamics in nature. [...]
2018 - 10.1073/pnas.1816964115
Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Issue 52 (December 2018) , p. E12443-E12452  
7.
7 p, 508.5 KB Novel genetic variants in differentiated thyroid cancer and assessment of the cumulative risk / Figlioli, Gisella (University of Pisa. Department of Biology) ; Chen, Bowang (German Cancer Research Center (DKFZ). Molecular Genetic Epidemiology (Germany)) ; Elisei, Rossella (University of Pisa. Department of Endocrinology and Metabolism (Italy)) ; Romei, Cristina (University of Pisa. Department of Endocrinology and Metabolism (Italy)) ; Campo, Chiara (University of Pisa. Department of Biology (Italy)) ; Cipollini, Monica (University of Pisa. Department of Biology (Italy)) ; Cristaudo, Alfonso (University of Pisa. Department of Endocrinology and Metabolism (Italy)) ; Bambi, Franco (Blood Centre, Azienda Ospedaliero Universitaria A. Meyer (Italy)) ; Paolicchi, Elisa (University of Pisa. Department of Biology (Italy)) ; Hoffmann, Per (University of Basel. Department of Biomedicine (Switzerland)) ; Herms, Stefan (University of Basel. Department of Biomedicine (Switzerland)) ; Kalemba, Michał (Maria Sklodowska-Curie Memorial Cancer Center. Department of Nuclear Medicine and Endocrine Oncology (Poland)) ; Kula, Dorota (Maria Sklodowska-Curie Memorial Cancer Center. Department of Nuclear Medicine and Endocrine Oncology (Poland)) ; Pastor Benito, Susana (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Marcos Dauder, Ricardo (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Velázquez Henar, Antonia (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Jarząb, Barbara (Maria Sklodowska-Curie Memorial Cancer Center. Department of Nuclear Medicine and Endocrine Oncology (Poland)) ; Landi, Stefano (University of Pisa. Department of Biology (Italy)) ; Hemminki, Kari (Lund University. Center for Primary Health Care Research, Clinical Research Center (Sweden)) ; Gemignani, Federica (University of Pisa. Department of Biology (Italy)) ; Försti, Asta (Lund University. Center for Primary Health Care Research, Clinical Research Center (Sweden))
A genome-wide association study (GWAS) performed on a high-incidence Italian population followed by replications on low-incidence cohorts suggested a strong association of differentiated thyroid cancer (DTC) with single nucleotide polymorphisms (SNPs) at 9q22. [...]
2015 - 10.1038/srep08922
Scientific reports (Nature Publishing Group), Vol. 5 (March 2015) , art. 8922  
8.
10 p, 860.4 KB Population structure of eleven Spanish ovine breeds and detection of selective sweeps with BayeScan and hapFLK / Manunza, Arianna (Centre de Recerca en Agrigenòmica) ; Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ; Noce, Antonia (Centre de Recerca en Agrigenòmica) ; Martínez Martínez, Amparo (Universidad de Córdoba. Departamento de Genética) ; Pons Barro, Agueda (Servei de Millora Agrària i Pesquera (SEMILLA)) ; Bermejo Asensio, Luis Alberto (Universidad de la Laguna) ; Landi, Vincenzo (Universidad de Córdoba. Departamento de Genética) ; Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ; Adán Belmonte, Silvia (Federación de Razas Autóctonas de Galicia (BOAGA)) ; Capote, Juan (Instituto Canario de Investigaciones Agrarias) ; Vidal i Fàbrega, Oriol (Universitat de Girona. Departament de Biologia) ; Ugarte Sagastizabal, Eva (Neiker-Tecnalia) ; Arranz Santos, Juan José (Universidad de León. Departamento de Producción Animal) ; Calvo Lacosta, Jorge Hugo (Centro de Investigación y Tecnología Agroalimentaria de Aragón) ; Casellas Vidal, Joaquim (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
The goals of the current work were to analyse the population structure of 11 Spanish ovine breeds and to detect genomic regions that may have been targeted by selection. A total of 141 individuals were genotyped with the Infinium 50 K Ovine SNP BeadChip (Illumina). [...]
2016 - 10.1038/srep27296
Scientific reports (Nature Publishing Group), Vol. 6 (June 2016) , art. 27296  
9.
9 p, 905.1 KB Romanian wild boars and Mangalitza pigs have a European ancestry and harbour genetic signatures compatible with past population bottlenecks / Manunza, Arianna (Centre de Recerca en Agrigenòmica) ; Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Noce, Antonia (Centre de Recerca en Agrigenòmica) ; Cabrera Pane, Betlem (Centre de Recerca en Agrigenòmica) ; Zidi, Ali (Centre de Recerca en Agrigenòmica) ; Eghbalsaied, Shahin (Islamic Azad University (Isfahan, Iran). Department of Animal Science) ; Carrillo de Albornoz, Eva (Centre de Recerca en Agrigenòmica) ; Portell Vidal, Mariona (Centre de Recerca en Agrigenòmica) ; Mercadé Carceller, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Balteanu, Valentin Adrian (University of Agricultural Sciences and Veterinary Medicine)
We aimed to analyse the genetic diversity of Romanian wild boars and to compare it with that from other wild boar and pig populations from Europe and Asia. Partial sequencing of the mitochondrial encoded cytochrome b (MT-CYB) gene from 36 Romanian wild boars and 36 domestic pigs (Mangalitza, Bazna and Vietnamese breeds) showed that the diversity of Romanian wild boars and Mangalitza pigs is fairly reduced, and that most of the members of these two populations share a common MT-CYB haplotype. [...]
2016 - 10.1038/srep29913
Scientific reports (Nature Publishing Group), Vol. 6 (July 2016) , art. 29913  
10.
25 p, 1.2 MB A generalized Watterson estimator for next-generation sequencing : from trios to autopolyploids / Ferretti, Luca (Université Pierre et Marie CURIE) ; Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica)
Several variations of the Watterson estimator of variability for Next Generation Sequencing (NGS) data have been proposed in the literature. We present a unified framework for generalized Watterson estimators based on Maximum Composite Likelihood, which encompasses most of the existing estimators. [...]
2015 - 10.1016/j.tpb.2015.01.001
Theoretical population biology, Vol. 100 (March 2015) , p. 79-87  

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