UAB Digital Repository of Documents 50 records found  1 - 10nextend  jump to record: Search took 0.02 seconds. 
1.
14 p, 1.9 MB Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species / Zingaretti, Laura M. (Centre de Recerca en Agrigenòmica) ; Gezan, Salvador Alejandro (University of Florida. School of Forest Resources and Conservation (USA)) ; Ferrão, Luis Felipe V. (University of Florida. Horticultural Sciences Department (USA)) ; Osorio, Luis F. (University of Florida. IFAS Gulf Coast Research and Education Center (USA)) ; Monfort Vives, Amparo (Centre de Recerca en Agrigenòmica) ; Muñoz, Patricio R. (University of Florida. Horticultural Sciences Department (USA)) ; Whitaker, Vance M. (University of Florida. IFAS Gulf Coast Research and Education Center (USA)) ; Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates are predicted using genome wide marker information. Although numerous examples of GP exist in plants and animals, applications to polyploid organisms are still scarce, partly due to limited genome resources and the complexity of this system. [...]
2020 - 10.3389/fpls.2020.00025
Frontiers in plant science, Vol. 11 (February 2020) , art. 25  
2.
19 p, 1.4 MB Drought resistance by engineering plant tissue-specific responses / Martignago, Damiano (Centre de Recerca en Agrigenòmica) ; Rico Medina, Andrés (Centre de Recerca en Agrigenòmica) ; Blasco Escámez, David (Centre de Recerca en Agrigenòmica) ; Fontanet Manzaneque, Juan B. (Centre de Recerca en Agrigenòmica) ; Caño Delgado, Ana I. (Centre de Recerca en Agrigenòmica)
Drought is the primary cause of agricultural loss globally, and represents a major threat to food security. Currently, plant biotechnology stands as one of the most promising fields when it comes to developing crops that are able to produce high yields in water-limited conditions. [...]
2020 - 10.3389/fpls.2019.01676
Frontiers in plant science, Vol. 10 (January 2020) , art. 1676  
3.
12 p, 1.7 MB Looking at the past and heading to the Future : Meeting summary of the 6th European Workshop on Plant Chromatin 2019 in Cologne, Germany / Moreno Romero, Jordi (Centre de Recerca en Agrigenòmica) ; Probst, Aline V. (Université Clermont Auvergne. Centre National de la Recherche Scientifique. Genetics, Reproduction and Development (France)) ; Trindade, Inês (University of Potsdam. Institute for Biochemistry and Biology (Germany)) ; Kalyanikrishna (Freie Universität Berlin. Institute for Biology (Germany)) ; Engelhorn, Julia (Max Planck Institute for Plant Breeding Research (Germany)) ; Farrona, S. (Ryan Institute. Plant and AgriBiosciences Centre (Ireland))
In June 2019, more than a hundred plant researchers met in Cologne, Germany, for the 6th European Workshop on Plant Chromatin (EWPC). This conference brought together a highly dynamic community of researchers with the common aim to understand how chromatin organization controls gene expression, development, and plant responses to the environment. [...]
2020 - 10.3389/fpls.2019.01795
Frontiers in plant science, Vol. 10 (February 2020) , art. 1795  
4.
5 p, 629.0 KB Additional ORFs in plant LTR-retrotransposons / Vicient Sánchez, Carlos M. (Centre de Recerca en Agrigenòmica) ; Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica)
LTR-retrotransposons share a common genomic organization in which the 5' long terminal repeat (LTR) is followed by the gag and pol genes and terminates with the 3' LTR. Although GAG-POL-encoded proteins are considered sufficient to accomplish the LTR-retrotransposon transposition, a number of elements carrying additional open reading frames (aORF) have been described. [...]
2020 - 10.3389/fpls.2020.00555
Frontiers in plant science, Vol. 11 (May 2020) , art. 555  
5.
14 p, 2.0 MB Early-warning signals of individual tree mortality based on annual radial growth / Cailleret, Maxime (Swiss Federal Institute for Forest, Snow and Landscape Research (Switzerland)) ; Dakos, Vasilis (Université de Montpellier. Centre national de la recherche scientifique (France)) ; Jansen, Steven (Ulm University. Institute of Systematic Botany and Ecology (Germany)) ; Robert, Elisabeth M. R. (Centre de Recerca Ecològica i d'Aplicacions Forestals) ; Aakala, Tuomas (University of Helsinki. Department of Forest Sciences (Finland)) ; Amoroso, Mariano M. (Universidad Nacional de Río Negro. Instituto de Investigaciones en Recursos Naturales, Agroecología y Desarrollo Rural (Argentina)) ; Antos, Joe A. (University of Victoria. Department of Biology (Canada)) ; Bigler, Christof (ETH Zürich. Institute of Terrestrial Ecosystems. Department of Environmental Systems Science, Forest Ecology (Switzerland)) ; Bugmann, Harald (ETH Zürich. Institute of Terrestrial Ecosystems. Department of Environmental Systems Science, Forest Ecology (Switzerland)) ; Caccianaga, Marco (Università degli Studi di Milano. Dipartimento di Bioscienze (Italy)) ; Camarero, Jesús Julio (Consejo Superior de Investigaciones Científicas. Instituto Pirenaico de Ecología) ; Cherubini, Paolo (Swiss Federal Institute for Forest, Snow and Landscape Research (Switzerland)) ; Coyea, Marie R. (Université Laval. Département des Sciences du Bois et de la Forêt (Canada)) ; Čufar, Katarina (University of Ljubljana. Biotechnical Faculty (Slovenia)) ; Das, Adrian J. (United States Geological Survey. Western Ecological Research Center (USA)) ; Davi, Hendrik (Institut National de la Recherche Agronomique. Ecologie des Forêts Méditerranéennes (France)) ; Gea-Izquierdo, Guillermo (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Centro de Investigación Forestal) ; Gillner, Sten (Institute of Forest Botany and Forest Zoology (Germany)) ; Haavik, Laurel J. (University of Arkansas. Department of Entomology (USA)) ; Hartmann, Henrik (Max Planck Institute for Biogeochemistry. Department of Biogeochemical Processes (Germany)) ; Hereş, Ana-Maria (BC3 - Basque Centre for Climate Change) ; Hultine, Kevin R. (Desert Botanical Garden. Department of Research, Conservation and Collections (USA)) ; Janda, Pavel (Czech University of Life Sciences. Faculty of Forestry and Wood Sciences (Czechia)) ; Kane, Jeffrey M. (Humboldt State University. Department of Forestry and Wildland Resources (USA)) ; Kharuk, Viachelsav I. (Siberian Federal University (Russia)) ; Kitzberger, Thomas (Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Biodiversidad y Medioambiente (Argentina)) ; Klein, Tamir (Weizmann Institute of Science. Department of Plant and Environmental Sciences (Israel)) ; Levanic, Tom (Slovenian Forestry Institute. Department of Yield and Silviculture (Slovenia)) ; Linares, Juan Carlos (Universidad Pablo de Olavide. Departamento de Sistemas Físicos, Químicos y Naturales) ; Lombardi, Fabio (Mediterranean University of Reggio Calabria. Department of Agricultural Science (Italy)) ; Mäkinen, Harri (Natural Resources Institute Finland) ; Mészáros, Ilona (University of Debrecen. Department of Botany (Hungary)) ; Metsaranta, Juha M. (Natural Resources Canada. Canadian Forest Service. Northern Forestry Centre (Canada)) ; Oberhuber, Walter (University of Innsbruck. Department of Botany (Austria)) ; Papadopoulos, Andreas (Technological Educational Institute of Stereas Elladas. Department of Forestry and Natural Environment Management (Greece)) ; Petritan, Any Mary (National Institute for Research and Development in Forestry "Marin Dracea" (Romania)) ; Rohner, Brigitte (Swiss Federal Institute for Forest, Snow and Landscape Research (Switzerland)) ; Sangüesa-Barreda, Gabriel (Universidad de Valladolid. Departamento de Ciencias Agroforestales) ; Smith, Jeremy M. (University of Colorado. Department of Geography (USA)) ; Stan, Amanda B. (Northern Arizona University. Department of Geography, Planning and Recreation (USA)) ; Stojanovic, Dejan B. (University of Novi Sad. Institute of Lowland Forestry and Environment (Serbia)) ; Suarez, Maria Laura (Consejo Nacional de Investigaciones Científicas y Técnicas. Grupo Ecología Forestal (Argentina)) ; Svoboda, Miroslav (Czech University of Life Sciences. Faculty of Forestry and Wood Sciences of Life Sciences (Czechia)) ; Trotsiuk, Volodymyr (Institute of Agricultural Sciences. Department of Environmental Systems Science (Switzerland)) ; Villalba, Ricardo (Instituto Argentino de Nivología, Glaciología y Ciencias Ambientales. Laboratorio de Dendrocronología e Historia Ambiental (Argentina)) ; Westwood, Alana R. (University of Alberta. Department of Renewable Resources (Canada)) ; Wyckoff, Peter H. (University of Minnesota. Department of Biology (USA)) ; Martínez Vilalta, Jordi, 1975- (Centre de Recerca Ecològica i d'Aplicacions Forestals)
Tree mortality is a key driver of forest dynamics and its occurrence is projected to increase in the future due to climate change. Despite recent advances in our understanding of the physiological mechanisms leading to death, we still lack robust indicators of mortality risk that could be applied at the individual tree scale. [...]
2019 - 10.3389/fpls.2018.01964
Frontiers in plant science, Vol. 9 (January 2019) , art. 1964  
6.
10 p, 1.1 MB An Improved Melon Reference Genome With Single-Molecule Sequencing Uncovers a Recent Burst of Transposable Elements With Potential Impact on Genes / Castanera, Raúl (Centre de Recerca en Agrigenòmica) ; Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ; Pujol, Marta (Centre de Recerca en Agrigenòmica) ; Garcia Mas, Jordi (Centre de Recerca en Agrigenòmica) ; Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica)
The published melon (Cucumis melo L. ) reference genome assembly (v3. 6. 1) has still 41. 6 Mb (Megabases) of sequences unassigned to pseudo-chromosomes and about 57 Mb of gaps. Although different approaches have been undertaken to improve the melon genome assembly in recent years, the high percentage of repeats (~40%) and limitations due to read length have made it difficult to resolve gaps and scaffold's misassignments to pseudomolecules, especially in the heterochromatic regions. [...]
2020 - 10.3389/fpls.2019.01815
Frontiers in plant science, Vol. 10 (January 2020) , art. 1815  
7.
15 p, 2.5 MB Inactivation of UDP-Glucose Sterol Glucosyltransferases Enhances Arabidopsis Resistance to Botrytis cinerea / Castillo, Nídia (Centre de Recerca en Agrigenòmica) ; Pastor, Victòria (Univesitat Jaume I. Departament de Ciències Agràries i del Medi Natural) ; Chávez, Ángel (Centre de Recerca en Agrigenòmica) ; Arró i Plans, Montserrat (Centre de Recerca en Agrigenòmica) ; Boronat i Margosa, Albert (Centre de Recerca en Agrigenòmica) ; Flors, Victor (Univesitat Jaume I. Departament de Ciències Agràries i del Medi Natural) ; Ferrer i Prats, Albert (Centre de Recerca en Agrigenòmica) ; Altabella Artigas, Teresa (Centre de Recerca en Agrigenòmica)
Free and glycosylated sterols are both structural components of the plasma membrane that regulate their biophysical properties and consequently different plasma membrane-associated processes such as plant adaptation to stress or signaling. [...]
2019 - 10.3389/fpls.2019.01162
Frontiers in plant science, Vol. 10 (September 2019) , art. 1162  
8.
11 p, 2.5 MB CmVPS41 Is a General Gatekeeper for Resistance to Cucumber Mosaic Virus Phloem Entry in Melon / Pascual, Laura (Centre de Recerca en Agrigenòmica) ; Jinqiang, Yan (Centre de Recerca en Agrigenòmica) ; Pujol, Marta (Centre de Recerca en Agrigenòmica) ; Monforte, Antonio J. (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas) ; Picó Silvent, Belén (Instituto de Conservación y Mejora de la Agrodiversidad Valenciana) ; Martín-Hernández, Ana Montserrat (Centre de Recerca en Agrigenòmica)
Melon production is often compromised by viral diseases, which cannot be treated with chemicals. Therefore, the use of genetic resistances is the main strategy for generating crops resistant to viruses. [...]
2019 - 10.3389/fpls.2019.01219
Frontiers in plant science, Vol. 10 (October 2019) , art. 1219  
9.
16 p, 3.1 MB Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Prunus persica (L.) Batsch] / Carrasco-Valenzuela, Tomás (Universidad Andres Bello. Centro de Biotecnología Vegetal) ; Muñoz-Espinoza, Claudia (Universidad Andres Bello. Centro de Biotecnología Vegetal) ; Riveros, Aníbal (Universidad Andres Bello. Centro de Biotecnología Vegetal) ; Pedreschi, Romina (Pontificia Universidad Católica de Valparaíso. Escuela de Agronomía) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Campos-Vargas, Reinaldo (Universidad Andres Bello. Centro de Biotecnología Vegetal) ; Meneses, Claudio (Universidad Andres Bello. Centro de Biotecnología Vegetal)
Significant differences in softening rate have been reported between melting flesh in peach and nectarine varieties. This trait seems to be controlled by several genes. We aimed to identify candidate genes involved in fruit softening rate by integrating quantitative trait loci (QTL) and expression QTL (eQTL) analyses, comparing siblings with contrasting softening rates. [...]
2019 - 10.3389/fpls.2019.01581
Frontiers in plant science, Vol. 10 (December 2019) , art. 1581  
10.
10 p, 1.6 MB Mapping Cucumber Vein Yellowing Virus Resistance in Cucumber (Cucumis sativus L.) by Using BSA-seq Analysis / Pujol, Marta (Centre de Recerca en Agrigenòmica) ; Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ; Fontaine, Anne-Sophie (Semillas Fitó S.A.) ; Mayor, Patricia (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ; Miras, Manuel (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ; Jahrmann, Torben (Semillas Fitó S.A.) ; Garcia Mas, Jordi (Centre de Recerca en Agrigenòmica) ; Aranda, Miguel A. (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal)
Cucumber vein yellowing virus (CVYV) causes severe yield losses in cucurbit crops across Mediterranean countries. The control of this virus is based on cultural practices to prevent the presence of its vector (Bemisia tabaci) and breeding for natural resistance, which requires the identification of the loci involved and the development of molecular markers for linkage analysis. [...]
2019 - 10.3389/fpls.2019.01583
Frontiers in plant science, Vol. 10 (December 2019) , art. 1583  

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