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1.
12 p, 2.8 MB Genome-wide patterns of homozygosity provide clues about the population history and adaptation of goats / Bertolini, Francesca (Iowa State University. Department of Animal Science) ; Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ; Marras, Gabriele (Fondazione Parco Tecnologico Padano) ; Nicolazzi, Ezequiel L. (Fondazione Parco Tecnologico Padano (PTP)) ; Rothschild, Max F. (Iowa State University. Department of Animal Science) ; Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
Background: Patterns of homozygosity can be influenced by several factors, such as demography, recombination, and selection. Using the goat SNP50 BeadChip, we genotyped 3171 goats belonging to 117 populations with a worldwide distribution. [...]
2018 - 10.1186/s12711-018-0424-8
Genetics selection evolution, Vol. 50 (2018) , art. 59  
2.
19 p, 1.6 MB The role of UV-B light on small RNA activity during grapevine berry development / Sunitha, Sukumaran (Texas Tech University. Department of Biological Sciences) ; Loyola, Rodrigo (Pontificia Universidad Católica de Chile. Departamento de Genética Molecular y Microbiología) ; Alcalde, José Antonio (Pontificia Universidad Católica de Chile. Departamento de Fruticultura y Enología) ; Arce-Johnson, Patricio (Pontificia Universidad Católica de Chile. Departamento de Genética Molecular y Microbiología) ; Matus, José Tomás (Centre de Recerca en Agrigenòmica) ; Rock, Christopher D. (Texas Tech University. Department of Biological Sciences)
We explored the effects of ultraviolet B radiation (UV-B) on the developmental dynamics of microRNAs and phased small-interfering-RNA (phasi-RNAs)-producing loci by sequencing small RNAs in vegetative and reproductive organs of grapevine (Vitis vinifera L. [...]
2019 - 10.1534/g3.118.200805
G3: genes, genomes, genetics, Vol. 9, issue 3 (March 2019) , p. 769-787  
3.
4 p, 557.8 KB Evolution of plant phenotypes, from genomes to traits / Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica) ; Jackson, Scott (University of Georgia (Tbilisi, Geòrgia). Center for Applied Genetic Technologies) ; Panaud, Olivier (Université de Perpignan. Laboratoire Génome et Développement des Plantes) ; Purugganan, Michael (New York University. Center for Genomics and Systems Biology) ; Wendel, Jonathan (Iowa State University. Department of Ecology, Evolution and Organismal Biology)
2016 - 10.1534/g3.115.025502
G3: genes, genomes, genetics, Vol. 6, issue 4 (April 2016) , p. 775-778  
4.
10 p, 531.1 KB Development of retrotransposon-based markers IRAP and REMAP for cassava (Manihot esculenta) / Kuhn, B.C. (Universidade Estadual de Maringá) ; Mangolin, Claudete A. (Universidade Estadual de Maringá. Departamento de Biologia Celular e Genética) ; Souto, Eliezer R. (Universidade Estadual de Maringá. Departamento de Agronomia) ; Vicient Sánchez, Carlos M. (Centre de Recerca en Agrigenòmica) ; Machado, M.F.P.S. (Universidade Estadual de Maringá. Departamento de Biologia Celular e Genética)
Retrotransposons are abundant in the genomes of plants. In the present study, inter-retrotransposon amplified polymorphism (IRAP) and retrotransposon-microsatellite amplified polymorphism (REMAP) markers were developed for the cassava genome (Manihot esculenta Crantz). [...]
2016 - 10.4238/gmr.15027149
Genetics and molecular research, Vol. 15, Issue 2 (April 2016) , art. 15027149  
5.
10 p, 1.6 MB The genome of woodland strawberry (Fragaria vesca) / Shulaev, Vladimir (University of North Texas. Department of Biological Sciences) ; Sargent, Daniel J. (East Malling Research) ; Crowhurst, Ross N. (New Zealand Institute for Plant and Food Research Limited) ; Mockler, Todd C. (Oregon State University. Center for Genome Research and Biocomputing) ; Folkerts, Otto (Chromatin Inc.) ; Delcher, Arthur L. (University of Maryland. Center for Bioinformatics and Computational Biology) ; Jaiswal, Pankaj (Oregon State University. Department of Botany and Plant Pathology) ; Mockaitis, Keithanne (Indiana University. Center for Genomics and Bioinformatics) ; Liston, Aaron (Oregon State University. Department of Botany and Plant Pathology) ; Mane, Shrinivasrao P. (Virginia Bioinformatics Institute) ; Burns, Paul (Joint Georgia Tech and Emory Wallace H. Coulter. Department of Biomedical Engineering) ; Davis, Thomas M. (University of New Hampshire. Department of Biological Sciences) ; Slovin, Janet P. (Henry Wallace Beltsville Agricultural Research Center) ; Bassil, Nahla (National Clonal Germplasm Repository) ; Hellens, Roger P. (New Zealand Institute for Plant and Food Research Limited) ; Evans, Clive (State University. Virginia Bioinformatics Institute) ; Harkins, Tim (Roche Diagnostics. Roche Applied Science) ; Kodira, Chinnappa (Roche Diagnostics. Roche Applied Science) ; Desany, Brian (Roche Diagnostics. Roche Applied Science) ; Crasta, Oswald R. (Chromatin Inc.) ; Jensen, Roderick V. (Virginia Tech. Department of Biological Sciences) ; Allan, Andrew C. (New Zealand Institute for Plant and Food Research Limited) ; Michael, Todd P. (State University of New Jersey. Waksman Institute of Microbiology) ; Setubal, Joao Carlos (Virginia Tech. Department of Computer Science) ; Celton, Jean-Marc (University of the Western Cape. Department of Biotechnology) ; Rees, D. Jasper G. (University of the Western Cape. Department of Biotechnology) ; Williams, Kelly P. (State University. Virginia Bioinformatics Institute) ; Holt, Sarah H. (Institute for Sustainable and Renewable Resources) ; Rojas, Juan Jairo (State University. Virginia Polytechnic Institute. Department of Horticulture) ; Chatterjee, Mithu (University of Florida. Graduate Program for Plant Molecular and Cellular Biology) ; Liu, Bo (University of New Hampshire. Department of Biological Sciences) ; Silva, Herman (University of Chile. Millennium Nucleus in Plant Cell Biotechnology) ; Meisel, Lee (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology) ; Adato, Avital (Weizmann Institute of Science. Department of Plant Sciences) ; Filichkin, Sergei A. (Oregon State University. Center for Genome Research and Biocomputing) ; Troggio, Michela (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige () ; Viola, Roberto (Istituto Agrario San Michele all'Adige (IASMA). Research and Innovation Centre. Foundation Edmund Mach) ; Ashman, Tia-Lynn (University of Pittsburgh. Department of Biological Sciences) ; Wang, Hao (University of Georgia. Department of Genetics) ; Dharmawardhana, Palitha (Oregon State University. Department of Botany and Plant Pathology) ; Elser, Justin (Oregon State University. Department of Botany and Plant Pathology) ; Raja, Rajani (Oregon State University. Department of Botany and Plant Pathology) ; Priest, Henry D. (Oregon State University. Center for Genome Research and Biocomputing) ; Bryant, Douglas W. (Oregon State University. Center for Genome Research and Biocomputing) ; Fox, Samuel E. (Oregon State University. Center for Genome Research and Biocomputing) ; Givan, Scott A. (Oregon State University. Center for Genome Research and Biocomputing) ; Wilhelm, Larry J. (Oregon State University. Center for Genome Research and Biocomputing) ; Naithani, Sushma (Oregon State University. Department of Horticulture) ; Christoffels, Alan (University of the Western Cape. South African National Bioinformatics Institute) ; Salama, David Y. (University of Florida. Horticultural Sciences Department) ; Carter, Jade (Indiana University. Center for Genomics and Bioinformatics) ; Girona, Elena L. (East Malling Research) ; Zdepski, Anna (State University of New Jersey. Waksman Institute of Microbiology) ; Wang, Wenqin (State University of New Jersey. Waksman Institute of Microbiology) ; Kerstetter, Randall A (State University of New Jersey. Waksman Institute of Microbiology) ; Schwab, Wilfried (Technical University München. Biotechnology of Natural Products) ; Korban, Schuyler S. (University of Illinois. Department of Natural Resources and Environmental Sciences) ; Davik, Jahn (Norwegian Institute for Agricultural and Environmental Research. Genetics and Biotechnology) ; Monfort Vives, Amparo (Centre de Recerca en Agrigenòmica) ; Denoyes-Rothan, Beatrice (Institut National de la Recherche Agronomique. Unité de Recherche des Espèces Fruitières) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Mittler, Ron (University of North Texas. Department of Biological Sciences) ; Flinn, Barry (Institute for Sustainable and Renewable Resources. Institute for Advanced Learning and Research) ; Aharoni, Asaph (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology. Centro de Biotecnología Vegetal.) ; Bennetzen, Jeffrey L. (University of Georgia. Department of Genetics) ; Salzberg, Steven L. (University of Maryland. Center for Bioinformatics and Computational Biology) ; Dickerman, Allan W (State University. Virginia Bioinformatics Institute. Virginia Polytechnic Institute) ; Velasco, Riccardo (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige) ; Borodovsky, Mark (Georgia Tech. School of Computational Science and Engineering) ; Veilleux, Richard E. (State University. Virginia Polytechnic Institute. Department of Horticulture) ; Folta, Kevin M. (University of Florida. Graduate Program for Plant Molecular and Cellular Biology)
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria Ã- ananassa) and other economically important rosaceous plants. [...]
2011 - 10.1038/ng.740
Nature Genetics, Vol. 43, Issue 2 (February 2011) , p. 109-116  
6.
11 p, 2.1 MB Genetic variation, population structure and linkage disequilibrium in peach commercial varieties / Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ; Abbassi, El-Kadri (Centre de Recerca en Agrigenòmica) ; Howad, Werner (Centre de Recerca en Agrigenòmica) ; Arús, Pere (Centre de Recerca en Agrigenòmica)
Background: Peach [Prunus persica (L. ) Batsch] is one of the most economically important fruit crops that, due to its genetic and biological characteristics (small genome size, taxonomic proximity to other important species and short juvenile period), has become a model plant in genomic studies of fruit trees. [...]
2010 - 10.1186/1471-2156-11-69
BMC Genetics, Vol. 11 (July 2010) , art. 69  
7.
8 p, 2.2 MB Analysing the expression of eight clock genes in five tissues from fasting and fed sows / Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ; Quintanilla Aguado, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ; Castelló, Anna (Centre de Recerca en Agrigenòmica) ; Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ; Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries) ; Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
In a previous study, we observed that circadian clock genes are differentially expressed in the skeletal muscle of fasting and fed sows. The goal of the current work was to investigate if these genes are also differentially expressed in tissues containing the central (hypothalamus) and peripheral (duodenum, dorsal fat, muscle, and liver) clocks. [...]
2018 - 10.3389/fgene.2018.00475
Frontiers in genetics, Vol. 9 (October 2018) , art. 475  
8.
Low genome-wide homozygosity in 11 Spanish ovine breeds / Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ; Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ; Martínez Martínez, Amparo (Universidad de Córdoba. Departamento de Genética) ; Pons Barro, Agueda L. (Servei de Millora Agrària i Pesquera (SEMILLA)) ; Bermejo Asensio, Luis Alberto (Universidad de la Laguna) ; Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ; Adán Belmonte, Silvia (Federación de Razas Autóctonas de Galicia (BOAGA)) ; Ugarte Sagastizabal, Eva (Neiker-Tecnalia) ; Arranz Santos, Juan José (Universidad de León. Departamento de Producción Animal) ; Casellas Vidal, Joaquim (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
The population of Spanish sheep has decreased from 24 to 15 million heads in the last 75 years due to multiple social and economic factors. Such a demographic reduction might have caused an increase in homozygosity and inbreeding, thus limiting the viability of local breeds with excellent adaptations to harsh ecosystems. [...]
2019 - 10.1111/age.12832
Animal Genetics, Vol. 50, Issue 5 (October 2019) , p. 501-511  
9.
17 p, 1.8 MB Integrating genome-wide co-association and gene expression to identify putative regulators and predictors of feed efficiency in pigs / Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries) ; Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ; Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries) ; Sánchez Serrano, Juan Pablo (Institut de Recerca i Tecnologia Agroalimentàries) ; González Prendes, Rayner (Centre de Recerca en Agrigenòmica) ; Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ; Quintanilla Aguado, Raquel (Institut de Recerca i Tecnologia Agroalimentàries)
Background: Feed efficiency (FE) has a major impact on the economic sustainability of pig production. We used a systems-based approach that integrates single nucleotide polymorphism (SNP) co-association and gene-expression data to identify candidate genes, biological pathways, and potential predictors of FE in a Duroc pig population. [...]
2019 - 10.1186/s12711-019-0490-6
Genetics selection evolution, Vol. 51 (September 2019) , art. 48  
10.
11 p, 2.4 MB Patterns of homozygosity in insular and continental goat breeds / Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ; Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Centre de Recerca en Agrigenòmica) ; Bertolini, Francesca (Iowa State University. Department of Animal Science) ; Rothschild, Max (Iowa State University. Department of Animal Science) ; Marras, Gabriele (Fondazione Parco Tecnologico Padano. Bioinformatics Core Facility) ; Boink, Geert (Stichting Zeldzame Huisdierrassen) ; Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Capote, Juan (Instituto Canario de Investigaciones Agrarias) ; Carolan, Sean (The Old Irish Goat Society) ; Hallsson, Jón H. (Agricultural University of Iceland. Faculty of Land and Animal Resources) ; Kantanen, Juha (Natural Resources Institute Finland. Department of Production Systems) ; Pons Barro, Agueda L. (Servei de Millora Agrària i Pesquera (SEMILLA). Unitat de Races Autòctones) ; Lenstra, Johannes A. (Utrecht University. Faculty of Veterinary Medicine)
Genetic isolation of breeds may result in a significant loss of diversity and have consequences on health and performance. In this study, we examined the effect of geographic isolation on caprine genetic diversity patterns by genotyping 480 individuals from 25 European and African breeds with the Goat SNP50 BeadChip and comparing patterns of homozygosity of insular and nearby continental breeds. [...]
2018 - 10.1186/s12711-018-0425-7
Genetics selection evolution, Vol. 50 (november 2018)  

Dipòsit Digital de Documents de la UAB : 82 registres trobats   1 - 10següentfinal  anar al registre:
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