Depósito Digital de Documentos de la UAB Encontrados 8 registros  La búsqueda tardó 0.01 segundos. 
1.
16 p, 5.0 MB Transcriptome innovations in primates revealed by single-molecule long-read sequencing / Ferrández-Peral, Luis (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Xiaoyu Zhan (BGI-Shenzhen) ; Alvarez-Estape, Marina (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Chiva, Cristina (Centre de Regulació Genòmica) ; Esteller-Cucala, Paula (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; García Perez, Raquel (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Julià, Eva (Centre de Regulació Genòmica) ; Lizano, Esther (Institut Català de Paleontologia Miquel Crusafont) ; Fornas, Òscar (Centre de Regulació Genòmica) ; Sabidó, Eduard (Centre de Regulació Genòmica) ; Li, Qiye (BGI-Shenzhen) ; Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ; Juan, David (Institut de Biologia Evolutiva (Barcelona)) ; Zhang, Guojie
Transcriptomic diversity greatly contributes to the fundamentals of disease, lineage-specific biology, and environmental adaptation. However, much of the actual isoform repertoire contributing to shaping primate evolution remains unknown. [...]
2022 - 10.1101/gr.276395.121
Genome research, Published in Advance July 15, 2022
2 documentos
2.
14 p, 3.8 MB Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution / Maggiolini, Flavia Angela Maria (Università degli Studi di Bari "Aldo Moro". Dipartimento di Biologia) ; Sanders, Ashley D. (European Molecular Biology Laboratory) ; Shew, Colin James (University of California. Department of Biochemistry & Molecular Medicine) ; Sulovari, Arvis (University of Washington School of Medicine. Department of Genome Sciences) ; Mao, Yafei (University of Washington School of Medicine. Department of Genome Sciences) ; Puig Font, Marta (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Catacchio, Claudia Rita (Università degli Studi di Bari "Aldo Moro". Dipartimento di Biologia) ; Dellino, Maria (Università degli Studi di Bari "Aldo Moro". Dipartimento di Biologia) ; Palmisano, Donato (Università degli Studi di Bari "Aldo Moro". Dipartimento di Biologia) ; Mercuri, Ludovica (Università degli Studi di Bari "Aldo Moro". Dipartimento di Biologia) ; Bitonto, Miriana (Università degli Studi di Bari "Aldo Moro". Dipartimento di Biologia) ; Porubský, David (University of Washington School of Medicine. Department of Genome Sciences) ; Cáceres Aguilar, Mario (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Eichler, Evan E. (University of Washington. Howard Hughes Medical Institute) ; Ventura, Mario (Università degli Studi di Bari "Aldo Moro". Dipartimento di Biologia) ; Dennis, Megan Y. (University of California. Department of Biochemistry & Molecular Medicine) ; Korbel, Jan O. (European Molecular Biology Laboratory) ; Antonacci, Francesca (Università degli Studi di Bari "Aldo Moro". Dipartimento di Biologia)
Rhesus macaque is an Old World monkey that shared a common ancestor with human ∼25 Myr ago and is an important animal model for human disease studies. A deep understanding of its genetics is therefore required for both biomedical and evolutionary studies. [...]
2020 - 10.1101/gr.265322.120
Genome research, Vol. 30, Issue 11 (November 2020) , p. 1680-1693  
3.
13 p, 3.0 MB Copy number variation underlies complex phenotypes in domestic dog breeds and other canids / Serres-Armero, Aitor (Institut de Biologia Evolutiva (Barcelona)) ; Davis, Brian W. (Texas A&M University. Department of Veterinary Integrative Biosciences) ; Povolotskaya, Inna S. (Veltischev Research and Clinical Institute for Pediatrics of the Pirogov Russian National Research Medical University) ; Morcillo-Suarez, Carlos (Institut de Biologia Evolutiva (Barcelona)) ; Plassais, Jocelyn (National Institutes of Health. Cancer Genetics and Comparative Genomics Branch) ; Juan, David (Institut de Biologia Evolutiva (Barcelona)) ; Ostrander, Elaine A. (National Institutes of Health. Cancer Genetics and Comparative Genomics Branch) ; Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont)
Extreme phenotypic diversity, a history of artificial selection, and socioeconomic value make domestic dog breeds a compelling subject for genomic research. Copy number variation (CNV) is known to account for a significant part of inter-individual genomic diversity in other systems. [...]
2021 - 10.1101/gr.266049.120
Genome research, Vol. 31 (May 2021) , p. 762-774  
4.
13 p, 2.2 MB Determining the impact of uncharacterized inversions in the human genome by droplet digital PCR / Puig Font, Marta (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Lerga Jaso, Jon (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Giner-Delgado, Carla (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Pacheco, Sarai (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Izquierdo, David (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Delprat Obeaga, Alejandra (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Gayà Vidal, Magdalena (University of Porto. CIBIO/InBIO Research Center in Biodiversity and Genetic Resources (Portugal)) ; Regan, Jack F. (Digital Biology Center. Bio-Rad Laboratories (USA)) ; Karlin Neumann, George (Digital Biology Center. Bio-Rad Laboratories (USA)) ; Cáceres Aguilar, Mario (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Despite the interest in characterizing genomic variation, the presence of large repeats at the breakpoints hinders the analysis of many structural variants. This is especially problematic for inversions, since there is typically no gain or loss of DNA. [...]
2020 - 10.1101/gr.255273.119
Genome research, Vol. 30, Issue 5 (May 2020) , p. 724-735  
5.
14 p, 2.4 MB A comparison of gene expression and DNA methylation patterns across tissues and species / Blake, Lauren E. (University of Chicago. Department of Human Genetics (USA)) ; Roux, Julien (Swiss Institute of Bioinformatics (Switzerland)) ; Hernando-Herraez, Irene (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Banovich, Nicholas E. (University of Chicago. Department of Human Genetics (USA)) ; García Perez, Raquel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Hsiao, Chiaowen Joyce (University of Chicago. Department of Human Genetics (USA)) ; Eres, Ittai (University of Chicago. Department of Human Genetics (USA)) ; Cuevas, Claudia (University of Chicago. Department of Human Genetics (USA)) ; Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ; Gilad, Yoav (University of Chicago. Department of Medicine (USA))
Previously published comparative functional genomic data sets from primates using frozen tissue samples, including many data sets from our own group, were often collected and analyzed using nonoptimal study designs and analysis approaches. [...]
2020 - 10.1101/gr.254904.119
Genome research, Vol. 30, Issue 2 (February 2020) , p. 250-262  
6.
16 p, 1.4 MB Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines / Huang, W. (North Carolina State University. Department of Biological Sciences) ; Massouras, A. (Ecole Polytechnique Fédérale de Lausanne. Institute of Bioengineering) ; Inoue, Y. (Osaka University. Center for Education in Liberal Arts and Sciences) ; Peiffer, J. (North Carolina State University. Department of Biological Sciences) ; Ràmia Jesús, Miquel (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Tarone, A. M. (Texas AandM University. Department of Entomology) ; Turlapati, L. (North Carolina State University. Department of Biological Sciences) ; Zichner, T. (European Molecular Biology Laboratory) ; Zhu, D. (Baylor College of Medicine. Human Genome Sequencing Center) ; Lyman, R. F. (North Carolina State University. Department of Biological Sciences) ; Magwire, M. M. (North Carolina State University. Department of Biological Sciences) ; Blankenburg, K. (Baylor College of Medicine. Human Genome Sequencing Center) ; Carbone, M. A. (North Carolina State University. Department of Biological Sciences) ; Chang, K. (Baylor College of Medicine. Human Genome Sequencing Center) ; Ellis, L. L. (Texas AandM University. Department of Entomology) ; Fernandez, S. (Baylor College of Medicine. Human Genome Sequencing Center) ; Han, Y. (Baylor College of Medicine. Human Genome Sequencing Center) ; Highnam, G. (Virginia Tech. Virginia Bioinformatics Institute) ; Hjelmen, C. E. (Texas AandM University. Department of Entomology) ; Jack, J. R. (North Carolina State University. Department of Biological Sciences) ; Javaid, M. (Baylor College of Medicine. Human Genome Sequencing Center) ; Jayaseelan, J. C (Baylor College of Medicine. Human Genome Sequencing Center) ; Kalra, D. (Baylor College of Medicine. Human Genome Sequencing Center) ; Lee, S. (Baylor College of Medicine. Human Genome Sequencing Center) ; Lewis, L. (Baylor College of Medicine. Human Genome Sequencing Center) ; Munidasa, M. (Baylor College of Medicine. Human Genome Sequencing Center) ; Ongeri, F. (Baylor College of Medicine. Human Genome Sequencing Center) ; Patel, S. (Baylor College of Medicine. Human Genome Sequencing Center) ; Perales, L. (Baylor College of Medicine. Human Genome Sequencing Center) ; Perez, Agapito (Baylor College of Medicine. Human Genome Sequencing Center) ; Pu, L. L. (Baylor College of Medicine. Human Genome Sequencing Center) ; Rollmann, S. M. (North Carolina State University. Department of Biological Sciences) ; Ruth, R. (Baylor College of Medicine. Human Genome Sequencing Center) ; Saada, N. (Baylor College of Medicine. Human Genome Sequencing Center) ; Warner, C. (Shell International Exploration and Production, Inc.) ; Williams, A. (Baylor College of Medicine. Human Genome Sequencing Center) ; Wu, Y. Q. (Baylor College of Medicine. Human Genome Sequencing Center) ; Yamamoto, A. (North Carolina State University. Department of Biological Sciences) ; Zhang, Y. (Baylor College of Medicine. Human Genome Sequencing Center) ; Zhu, Y. (Baylor College of Medicine. Human Genome Sequencing Center) ; Anholt, R. R. H. (North Carolina State University. Department of Biological Sciences) ; Korbel, J. O. (European Molecular Biology Laboratory) ; Mittelman, D. (Virginia Tech. Virginia Bioinformatics Institute. Department of Biological Sciences) ; Muzny, D. M. (Baylor College of Medicine. Human Genome Sequencing Centere) ; Gibbs, R. A. (Baylor College of Medicine. Human Genome Sequencing Center) ; Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Johnston, J. S. (Texas AandM University. Department of Entomology) ; Stone, E. A. (North Carolina State University. Department of Biological Sciences) ; Richards, S. (Baylor College of Medicine. Human Genome Sequencing Center) ; Deplancke, Bart (Swiss Institute of Bioinformatics) ; Mackay, T. F. C. (North Carolina State University. Department of Biological Sciences)
The Drosophila melanogaster Genetic Reference Panel (DGRP) is a community resource of 205 sequenced inbred lines, derived to improve our understanding of the effects of naturally occurring genetic variation on molecular and organismal phenotypes. [...]
2014 - 10.1101/gr.171546.113
Genome research, Vol. 24, issue 7 (July 2014) , p. 1193-1208  
7.
14 p, 3.9 MB Systems analysis reveals complex biological processes during virus infection fate decisions / Argilaguet, Jordi (Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut) ; Pedragosa, Mireia (Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut) ; Esteve-Codina, Anna (Universitat Pompeu Fabra) ; Riera, G. (Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut) ; Vidal Barba, Enric (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ; Peligero-Cruz, C. (Weizmann Institute of Science (Israel). Department of Immunology) ; Casella, Valentina (Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut) ; Andreu Martínez, David (Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut) ; Kaisho, T. (Osaka University. Laboratory for Immune Regulation. World Premier International Research Center Initiative.) ; Bocharov, G. (Sechenov First Moscow State Medical University) ; Ludewig, B. (Institute for Immunobiology.) ; Heath, S. (Universitat Pompeu Fabra) ; Meyerhans, A. (Institució Catalana de Recerca i Estudis Avançats)
The processes and mechanisms of virus infection fate decisions that are the result of a dynamic virus-immune system interaction with either an efficient effector response and virus elimination or an alleviated immune response and chronic infection are poorly understood. [...]
2019 - 10.1101/gr.241372.118
Genome research, Vol. 29 Núm. 6 (2019) , p. 907-919  
8.
38 p, 5.4 MB Differences in firing efficiency, chromatin and transcription underlie the developmental plasticity of the Arabidopsis DNA replication origins / Sequeira-Mendes, Joana (Centro de Biología Molecular Severo Ochoa) ; Vergara, Zaida (Centro de Biología Molecular Severo Ochoa) ; Peiró, Ramón (Centro de Biología Molecular Severo Ochoa) ; Morata, Jordi (Centre de Recerca en Agrigenòmica) ; Aragüez, Irene (Centro de Biología Molecular Severo Ochoa) ; Costas, Celina (Centro de Biología Molecular Severo Ochoa) ; Méndez Giráldez, Raúl (Centro de Biología Molecular Severo Ochoa) ; Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica) ; Bastolla, Ugo (Centro de Biología Molecular Severo Ochoa) ; Gutiérrez, Crisanto (Centro de Biología Molecular Severo Ochoa)
Eukaryotic genome replication depends on thousands of DNA replication origins (ORIs). A major challenge is to learn ORI biology in multicellular organisms in the context of growing organs to understand their developmental plasticity. [...]
2019 - 10.1101/gr.240986.118
Genome research, Vol. 29, Issue 5 (May 2019) , p. 784-797  

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