UAB Digital Repository of Documents 413 records found  1 - 10nextend  jump to record: Search took 0.00 seconds. 
1.
34 p, 19.3 MB A compendium of genetic regulatory effects across pig tissues / Teng, Jinyan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Gao, Yahui (University of Maryland. Department of Animal and Avian Sciences) ; Yin, Hongwei (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ; Bai, Zhonghao (The University of Edinburgh) ; Liu, Shuli (Westlake University) ; Zeng, Haonan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Bai, Lijing (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ; Cai, Zexi (Aarhus University. Center for Quantitative Genetics and Genomics) ; Zhao, Bingru (China Agricultural University) ; Li, Xiujin (Zhongkai University of Agriculture and Engineering) ; Xu, Zhiting (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Lin, Qing (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Pan, Zhangyuan (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ; Yang, Wenjing (University of California, Davis. Department of Animal Science) ; Yu, Xiaoshan (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer) ; Guan, Dailu (University of California. Department of Animal Science) ; Hou, Yali (Chinese Academy of Sciences and China National Center for Bioinformation) ; Keel, Brittney N. (U.S. Meat Animal Research Center) ; Rohrer, Gary A. (U.S. Meat Animal Research Center) ; Lindholm-Perry, Amanda K. (U.S. Meat Animal Research Center) ; Oliver, William T. (U.S. Meat Animal Research Center) ; Ballester Devis, Maria (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ; Crespo-Piazuelo, Daniel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ; Quintanilla, Raquel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ; Canela-Xandri, Oriol (University of Edinburgh) ; Rawlik, Konrad (University of Edinburgh. Baillie Gifford Pandemic Science Hub) ; Xia, Charley (University of Edinburgh. Department of Psychology) ; Yao, Yuelin (University of Edinburgh) ; Zhao, Qianyi (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ; Yao, Wenye (Wageningen University and Research) ; Yang, Liu (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ; Li, Houcheng (Aarhus University. Center for Quantitative Genetics and Genomics) ; Zhang, Huicong (Aarhus University. Center for Quantitative Genetics and Genomics) ; Liao, Wang (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ; Chen, Tianshuo (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ; Karlskov-Mortensen, Peter (University of Copenhagen. Department of Veterinary and Animal Sciences) ; Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ; Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Clop, Alex (Consejo Superior de Investigaciones Científicas) ; Giuffra, Elisabetta (Paris-Saclay University) ; Wu, Jun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Cai, Xiaodian (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Diao, Shuqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Pan, Xiangchun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Wei, Chen (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Li, Jinghui (University of California, Davis. Department of Animal Science) ; Cheng, Hao (University of California, Davis. Department of Animal Science) ; Wang, Sheng (Chinese Academy of Sciences. Kunming Institute of Zoology) ; Su, Guosheng (Aarhus University. Center for Quantitative Genetics and Genomics) ; Sahana, Goutam (Aarhus University. Center for Quantitative Genetics and Genomics) ; Lund, Mogens Sandø (Aarhus University. Center for Quantitative Genetics and Genomics) ; Dekkers, Jack C. M. (Iowa State University. Department of Animal Science) ; Kramer, Luke (Iowa State University. Department of Animal Science) ; Tuggle, Christopher K. (Iowa State University. Department of Animal Science) ; Corbett, Ryan (Iowa State University. Department of Animal Science) ; Groenen, Martien A. M. (Wageningen University and Research. Animal Breeding and Genomics) ; Madsen, Ole (Wageningen University and Research. Animal Breeding and Genomics) ; Gòdia, Marta (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Rocha, Dominique (Paris-Saclay University) ; Charles, Mathieu (Paris-Saclay University) ; Li, Cong-jun (Henry A. Wallace Beltsville Agricultural Research Center) ; Pausch, Hubert (Animal Genomics) ; Hu, Xiaoxiang (China Agricultural University. State Key Laboratory of Agrobiotechnology) ; Frantz, Laurent (Queen Mary University of London. School of Biological and Behavioural Sciences) ; Luo, Yonglun (Qingdao-Europe Advanced Institute for Life Sciences. Lars Bolund Institute of Regenerative Medicine) ; Lin, Lin (Aarhus University Hospital. Steno Diabetes Center Aarhus) ; Zhou, Zhongyin (Chinese Academy of Sciences. Kunming Institute of Zoology) ; Zhang, Zhe (Zhejiang University. Department of Animal Science) ; Chen, Zitao (Zhejiang University. Department of Animal Science) ; Cui, Leilei (University College London. UCL Genetics Institute) ; Xiang, Ruidong (Centre for AgriBiosciences) ; Shen, Xia (University of Edinburgh. Centre for Global Health Research) ; Li, Pinghua (Nanjing Agricultural University. Institute of Swine Science) ; Huang, Ruihua (Nanjing Agricultural University. Institute of Swine Science) ; Tang, Guoqing (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ; Li, Mingzhou (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ; Zhao, Yunxiang (Guangxi University. College of Animal Science and Technology) ; Yi, Guoqiang (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ; Tang, Zhonglin (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ; Jiang, Jicai (North Carolina State University. Department of Animal Science) ; Zhao, Fuping (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ; Yuan, Xiaolong (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Liu, Xiaohong (Sun Yat-sen University. State Key Laboratory of Biocontrol) ; Chen, Yaosheng (Sun Yat-sen University. State Key Laboratory of Biocontrol) ; Xu, Xuewen (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ; Zhao, Shuhong (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ; Zhao, Pengju (Hainan Institute, Zhejiang University) ; Haley, Chris (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ; Zhou, Huaijun (University of California. Department of Animal Science) ; Wang, Qishan (Zhejiang University. Department of Animal Science) ; Pan, Yuchun (Zhejiang University. Department of Animal Science) ; Ding, Xiangdong (China Agricultural University. College of Animal Science and Technology) ; Ma, Li (University of Maryland. Department of Animal and Avian Sciences) ; Li, Jiaqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Navarro, Pau (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ; Zhang, Qin (Shandong Agricultural University. College of Animal Science and Technology) ; Li, Bingjie (Scotland's Rural College. Roslin Institute Building) ; Tenesa, Albert (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ; Li, Kui (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ; Liu, George E. (U.S. Department of Agriculture) ; Zhang, Zhe (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ; Fang, Lingzhao (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer)
The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been established to develop a public resource of genetic regulatory variants in livestock, which is essential for linking genetic polymorphisms to variation in phenotypes, helping fundamental biological discovery and exploitation in animal breeding and human biomedicine. [...]
2024 - 10.1038/s41588-023-01585-7
Nature genetics, Vol. 56 (january 2024) , p. 112-123  
2.
16 p, 3.7 MB An epigenetic switch controls an alternative NR2F2 isoform that unleashes a metastatic program in melanoma / Davalos, Veronica (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Lovell, Claudia D. (New York University School of Medicine, USA) ; Von Itter, Richard (New York University School of Medicine, USA) ; Dolgalev, Igor (New York University Grossman School of Medicine, USA) ; Agrawal, Praveen (New York University Grossman School of Medicine, USA) ; Baptiste, Gillian (New York University Grossman School of Medicine, USA) ; Kahler, David J. (New York University Grossman School of Medicine, USA) ; Sokolova, Elena (New York University Grossman School of Medicine, USA) ; Moran, Sebastian (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Piqué, Laia (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Vega-Saenz de Miera, Eleazar (New York University School of Medicine, USA) ; Fontanals-Cirera, Barbara (New York University School of Medicine, USA) ; Karz, Alcida (New York University School of Medicine, USA) ; Tsirigos, Aristotelis (New York University Grossman School of Medicine, USA) ; Yun, Chi (New York University Grossman School of Medicine, USA) ; Darvishian, Farbod (New York University Grossman School of Medicine, USA) ; Etchevers, Heather C. (Aix-Marseille University, Marseille, France) ; Osman, Iman (New York University Grossman School of Medicine, USA) ; Esteller, Manel (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Schober, Markus (New York University School of Medicine, USA) ; Hernando, Eva (New York University Grossman School of Medicine, USA)
Metastatic melanoma develops once transformed melanocytic cells begin to de-differentiate into migratory and invasive melanoma cells with neural crest cell (NCC)-like and epithelial-to-mesenchymal transition (EMT)-like features. [...]
2023 - 10.1038/s41467-023-36967-2
Nature communications, Vol. 14 Núm. 1 (april 2023)  
3.
33 p, 20.4 MB Hyaluronic acid-GPRC5C signalling promotes dormancy in haematopoietic stem cells / Zhang, Yu Wei (University of Freiburg, Germany) ; Mess, Julian (University of Freiburg, Germany) ; Aizarani, Nadim (University of Freiburg, Germany) ; Mishra, Pankaj (University of Freiburg, Germany) ; Johnson, Carys (University of Cambridge, UK) ; Romero-Mulero, Mari Carmen (University of Freiburg, Germany) ; Rettkowski, Jasmin (University of Freiburg, Germany) ; Schönberger, Katharina (University of Freiburg, Germany) ; Obier, Nadine (Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany) ; Jäcklein, Karin (Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany) ; Woessner, Nadine M. (University of Freiburg, Germany) ; Lalioti, Maria Eleni (Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany) ; Velasco-Hernandez, Talia (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Sikora, Katarzyna (Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany) ; Wäsch, Ralph (University of Freiburg, Germany) ; Lehnertz, Bernhard (University of Montreal, Canada) ; Sauvageau, Guy (University of Montreal, Canada) ; Manke, Thomas (Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany) ; Menendez, Pablo (Catalan Institution for Research and Advanced Studies (ICREA)) ; Walter, Sebastian Gottfried (University Hospital of Cologne, Germany) ; Minguet, Susana (University of Freiburg, Germany) ; Laurenti, Elisa (University of Cambridge, UK) ; Günther, Stefan (University of Freiburg, Germany) ; Grün, Dominic (Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany) ; Cabezas-Wallscheid, Nina (Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany)
Bone marrow haematopoietic stem cells (HSCs) are vital for lifelong maintenance of healthy haematopoiesis. In inbred mice housed in gnotobiotic facilities, the top of the haematopoietic hierarchy is occupied by dormant HSCs, which reversibly exit quiescence during stress. [...]
2022 - 10.1038/s41556-022-00931-x
Nature Cell Biology, Vol. 24 Núm. 7 (july 2022) , p. 1038-1048  
4.
15 p, 3.7 MB Large T cell clones expressing immune checkpoints increase during multiple myeloma evolution and predict treatment resistance / Botta, Cirino (Clinica Universidad de Navarra) ; Perez, Cristina (Clinica Universidad de Navarra) ; Larrayoz, Marta (Clinica Universidad de Navarra) ; Puig, Noemí (Hospital Universitario de Salamanca) ; Cedena, María Teresa (Hospital Universitario 12 de Octubre) ; Termini, Rosalinda (Clinica Universidad de Navarra) ; Goicoechea, Ibai (Clinica Universidad de Navarra) ; Rodriguez, Sara (Clinica Universidad de Navarra) ; Zabaleta, Aintzane (Clinica Universidad de Navarra) ; Lopez, Aitziber (Clinica Universidad de Navarra) ; Sarvide, Sarai (Clinica Universidad de Navarra) ; Blanco, Laura (Clinica Universidad de Navarra) ; Papetti, Daniele Marco (Department of Informatics. University of Milano-Bicocca) ; Nobile, M.S. (Biostatistics and Bioimaging Centre-B4) ; Besozzi, Daniela (Biostatistics and Bioimaging Centre-B4) ; Gentile, Massimo (Department of Oncohematology. "Annunziata" Hospital) ; Correale, Pierpaolo (Great Metropolitan Hospital "Riuniti" of Reggio Calabria) ; Siragusa, Sergio (Department of Health Promotion. University of Palermo) ; Oriol, Albert (Institut Català d'Oncologia i Institut Josep Carreras) ; González-Garcia, Maria Esther (Hospital de Cabueñes) ; Sureda, Anna (Institut d'Investigació Biomèdica de Bellvitge) ; de Arriba, Felipe (Instituto Murciano de Investigación Biosanitaria) ; Ríos-Tamayo, Rafael (Hospital Universitario Puerta de Hierro Majadahonda (Madrid)) ; Moraleda, José María (Instituto Murciano de Investigación Biosanitaria) ; Gironella, Mercedes (Hospital Universitari Vall d'Hebron) ; Hernández, Miguel T. (Hospital Universitario de Canarias (Illes Canàries)) ; Bargay, Joan (Hospital Universitari Son Llàtzer (Illes Balears)) ; Palomera, Luís (Hospital Clínico Universitario "Lozano Blesa" de Zaragoza) ; Pérez-Montaña, Albert (Hospital Universitari Son Espases (Illes Balears)) ; Goldschmidt, Hartmut (Department of Internal Medicine V. University of Heidelberg) ; Avet-Loiseau, Hervé (IUC-T Oncopole) ; Roccaro, Aldo (Department of Hematology. ASST Spedali Civili di Brescia) ; Orfao, Alberto (Department of Medicine. University of Salamanca) ; Martinez-Lopez, Joaquín (Hospital Universitario 12 de Octubre) ; Rosiñol, Laura (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Lahuerta, J. J (Hospital Universitario 12 de Octubre) ; Bladé Creixenti, Juan (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Mateos, M. V (Hospital Universitario de SalamancaBiomedica de Salamanca (IBSAL). Centro de Investigación del Cancer (IBMCC-USAL. CSIC)) ; San-Miguel, J (Clinica Universidad de Navarra) ; Martinez Climent, Juan-José (Clinica Universidad de Navarra) ; Paiva, Bruno (Clinica Universidad de Navarra)
Tumor recognition by T cells is essential for antitumor immunity. A comprehensive characterization of T cell diversity may be key to understanding the success of immunomodulatory drugs and failure of PD-1 blockade in tumors such as multiple myeloma (MM). [...]
2023 - 10.1038/s41467-023-41562-6
Nature communications, Vol. 14 Núm. 1 (december 2023) , p. 5825  
5.
15 p, 2.7 MB ALPL-1 is a target for chimeric antigen receptor therapy in osteosarcoma / Mensali, Nadia (Department of Cellular Therapy. Oslo University Hospital) ; Köksal, Hakan (Department of Cellular Therapy. Oslo University Hospital) ; Joaquina, Sandy (Department of Cellular Therapy. Oslo University Hospital) ; Wernhoff, Patrick (Department of Cellular Therapy. Oslo University Hospital) ; Casey, Nicholas P. (Department of Cellular Therapy. Oslo University Hospital) ; Romecin, Paola Alejandra (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Panisello, Carla (Institut Germans Trias i Pujol.Institut de Recerca contra la Leucèmia Josep Carreras) ; Rodriguez, René (Instituto de Salud Carlos III) ; Vimeux, Lene (Université de Paris) ; Juzeniene, Asta (Department of Radiation Biology. Oslo University Hospital) ; Myhre, Marit R. (Department of Cellular Therapy. Oslo University Hospital) ; Fåne, Anne (Department of Cellular Therapy. Oslo University Hospital) ; Castilla Ramírez, Caroline (Virgen del Rocio University Hospital) ; Maggadottir, Solrun Melkork (Department of Cellular Therapy. Oslo University Hospital) ; Duru, Adil Doganay (Nova Southeastern University) ; Georgoudaki, Anna-Maria (Department of Oncology-Pathology. Karolinska Institutet) ; Grad, Iwona (Department of Radiation Biology. Oslo University Hospital) ; Maturana, Andrés Daniel (Nagoya University) ; Gaudernack, Gustav (Department of Cancer Immunology. Oslo University Hospital) ; Kvalheim, Gunnar (Department of Cellular Therapy. Oslo University Hospital) ; Carcaboso, Angel M. (Institut de Recerca Sant Joan de Deu) ; de Alava, Enrique (Department of Normal and Pathological Cytology and Histology. University of Seville) ; Donnadieu, Emma (Université de Paris) ; Bruland, Øyvind S ; Menendez, Pablo (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Inderberg, Else Marit (Department of Cellular Therapy. Oslo University Hospital) ; Wälchli, Sébastien (Department of Cellular Therapy. Oslo University Hospital)
Osteosarcoma (OS) remains a dismal malignancy in children and young adults, with poor outcome for metastatic and recurrent disease. Immunotherapies in OS are not as promising as in some other cancer types due to intra-tumor heterogeneity and considerable off-target expression of the potentially targetable proteins. [...]
2023 - 10.1038/s41467-023-39097-x
Nature communications, Vol. 14 Núm. 1 (december 2023) , p. 3375  
6.
34 p, 9.1 MB Targeting lymphoid-derived IL-17 signaling to delay skin aging / Solá, Paloma (Institute for Research in Biomedicine. Barcelona Institute of Science and Technology) ; Mereu, Elisabetta (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Bonjoch, Júlia (Institute for Research in Biomedicine. Barcelona Institute of Science and Technology) ; Casado Pelaez, Marta (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Prats, Neus (Institute for Research in Biomedicine. Barcelona Institute of Science and Technology) ; Aguilera Pujabet, Mònica (Institute for Research in Biomedicine. Barcelona Institute of Science and Technology) ; Reina, Oscar (Institute for Research in Biomedicine. Barcelona Institute of Science and Technology) ; Blanco, Enrique (Centre for Genomic Regulation. Barcelona Institute of Science and Technology) ; Esteller, Manel (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Di Croce, Luciano (ICREA. Catalan Institution for Research and Advanced Studies) ; Heyn, Holger (Centre for Genomic Regulation. Barcelona Institute of Science and Technology) ; Solanas, Guiomar (Institute for Research in Biomedicine. Barcelona Institute of Science and Technology) ; Benitah, Salvador Aznar (ICREA. Catalan Institution for Research and Advanced Studies)
Skin aging is characterized by structural and functional changes that contribute to age-associated frailty. This probably depends on synergy between alterations in the local niche and stem cell-intrinsic changes, underscored by proinflammatory microenvironments that drive pleotropic changes. [...]
2023 - 10.1038/s43587-023-00431-z
Nature Aging, Vol. 3 Núm. 6 (june 2023) , p. 688-704  
7.
37 p, 20.5 MB Epigenetic regulation during cancer transitions across 11 tumour types / Terekhanova, Nadezhda V. (Washington University in St Louis) ; Karpova, Alla (Washington University in St Louis) ; Liang, Wen Wei (Washington University in St Louis) ; Strzalkowski, Alexander (Department of Computer Science. Princeton University) ; Chen, Siqi (Washington University in St Louis) ; Li, Yize (Washington University in St Louis) ; Southard-Smith, Austin N. (Washington University in St Louis) ; Iglesia, Michael D. (Washington University in St Louis) ; Wendl, Michael C. (Washington University in St Louis) ; Jayasinghe, Reyka G. (Washington University in St Louis) ; Liu, Jingxian (Washington University in St Louis) ; Song, Yizhe (Washington University in St Louis) ; Cao, Song (Washington University in St Louis) ; Houston, Andrew (Washington University in St Louis) ; Liu, Xiuting (Department of Medicine. Washington University in St Louis) ; Wyczalkowski, Michael A. (Washington University in St Louis) ; Lu, Rita Jui-Hsien (Washington University in St Louis) ; Caravan, Wagma (Washington University in St Louis) ; Shinkle, Andrew (Department of Medicine. Washington University in St Louis) ; Naser Al Deen, Nataly (Washington University in St Louis) ; Herndon, John M. (Washington University in St Louis) ; Mudd, Jacqueline (Department of Surgery. Washington University in St Louis) ; Ma, Cong (Department of Computer Science. Princeton University) ; Sarkar, Hirak (Department of Computer Science. Princeton University) ; Sato, Kazuhito (Washington University in St Louis) ; Ibrahim, Omar.M. (Washington University in St Louis) ; Mo, Chia-Kuei (Washington University in St Louis) ; Chasnoff, Sara E. (Washington University in St Louis) ; Porta-Pardo, Eduard (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Held, Jasson M. (Washington University in St Louis) ; Pachynski, Russell (Washington University in St Louis) ; Schwarz, Julie K. (Department of Radiation Oncology. Washington University in St Louis) ; Gillanders, William E. (Washington University in St Louis) ; Kim, Albert H. (Department of Neurological Surgery. Washington University in St Louis) ; Vij, Ravi (Washington University in St Louis) ; DiPersio, John.F. (Washington University in St Louis) ; Puram, Sidharth V. (Department of Otolaryngology-Head & Neck Surgery. Washington University in St Louis) ; Chheda, Milan G. (Washington University in St Louis) ; Fuh, Katherine C. (Department of Obstetrics and Gynecology. Washington University in St Louis) ; DeNardo, David G. (Washington University in St Louis) ; Fields, Ryan C. (Washington University in St Louis) ; Chen, Feng (Washington University in St Louis) ; Raphael, Benjamin J. (Department of Computer Science. Princeton University) ; Ding, Li (Department of Genetics. Washington University in St Louis)
Chromatin accessibility is essential in regulating gene expression and cellular identity, and alterations in accessibility have been implicated in driving cancer initiation, progression and metastasis. [...]
2023 - 10.1038/s41586-023-06682-5
Nature, Vol. 623 Núm. 7986 (september 2023) , p. 432-441  
8.
18 p, 15.6 MB Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease / Garrido-Trigo, Alba (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Corraliza, Ana Maria (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Veny, Marisol (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Dotti, Isabella (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Melón-Ardanaz, Elisa (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Rill, Aina (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Crowell, Helena L. (Department of Molecular Life Sciences. University of Zurich. Switzerland. SIB Swiss Institute of Bioinformatics) ; Corbí, Ángel (Centro de Investigaciones Biológicas. Consejo Superior de Investigaciones Científicas (CSIC)) ; Gudiño, Victoria (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Esteller, Miriam (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Álvarez-Teubel, Iris (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Aguilar, Daniel (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Masamunt, M.Carmen (Institut d'Investigacions Biomèdiques August Pi i Sunyer) ; Killingbeck, E. (NanoString Technologies) ; Kim, Youngmi (NanoString Technologies) ; Leon, Michael (NanoString Technologies) ; Visvanathan, Sudha (Translational Medicine and Clinical Pharmacology. Boehringer-Ingelheim Pharmaceuticals Inc) ; Marchese, Domenica (Centre de Regulació Genòmica) ; Caratù, Ginevra (Centre de Regulació Genòmica) ; Martin-Cardona, Albert (Department of Gastroenterology. Hospital Universitari Mútua Terrassa. Universitat de Barcelona) ; Esteve, Maria (Department of Gastroenterology. Hospital Universitari Mútua Terrassa. Universitat de Barcelona) ; Panés, Julian (Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas) ; Ricart, Elena (Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas) ; Mereu, Elisabetta (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Heyn, Holger (Universitat Pompeu Fabra) ; Salas, Azucena (Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas)
Ulcerative colitis and Crohn's disease are chronic inflammatory intestinal diseases with perplexing heterogeneity in disease manifestation and response to treatment. While the molecular basis for this heterogeneity remains uncharacterized, single-cell technologies allow us to explore the transcriptional states within tissues at an unprecedented resolution which could further understanding of these complex diseases. [...]
2023 - 10.1038/s41467-023-40156-6
Nature communications, Vol. 14 Núm. 1 (december 2023) , p. 4506  
9.
17 p, 3.1 MB The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer / Armaos, Alexandros (Istituto Italiano di Tecnologia) ; Serra, François (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Núñez-Carpintero, Iker (Barcelona Supercomputing Center) ; Seo, J.H.Ji-Heui (Department of Medical Oncology, Dana Farber Cancer Institute (Estats Units d'Amèrica)) ; Baca, Sylvan C. (Department of Medical Oncology, Dana Farber Cancer Institute (Estats Units d'Amèrica)) ; Gustincich, Stefano (Istituto Italiano di Tecnologia) ; Valencia, Alfonso (ICREA - Institució Catalana de Recerca I Estudis Avançats) ; Freedman, Matthew L. (Broad Institute (Estats Units d'Amèrica)) ; Cirillo, D. (Barcelona Supercomputing Center) ; Giambartolomei, C. (Human Technopol (Itàlia)) ; Tartaglia, G.G. (Istituto Italiano di Tecnologia (Itàlia))
We introduce Promoter-Enhancer-Guided Interaction Networks (PENGUIN), a method for studying protein-protein interaction (PPI) networks within enhancer-promoter interactions. PENGUIN integrates H3K27ac-HiChIP data with tissue-specific PPIs to define enhancer-promoter PPI networks (EPINs). [...]
2023 - 10.1038/s41467-023-43767-1
Nature communications, Vol. 14 Núm. 1 (december 2023) , p. 8084  
10.
16 p, 3.4 MB Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution / Tomás-Daza, Laureano (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Rovirosa, Llorenç (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; López-Martí, Paula (Barcelona Supercomputing Center) ; Nieto-Aliseda, Andrea (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Serra, François (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Planas-Riverola, Ainhoa (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Molina, Oscar (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; McDonald, Rebecca (Wellcome-MRC Cambridge Stem Cell Institute) ; Ghevaert, Cedric (NHS Blood and Transplant) ; Cuatrecasas, Esther (Hospital Sant Joan de Déu) ; Costa, Dolors (Cancer Network Biomedical Research Center) ; Camós, Mireia (Instituto Carlos III) ; Bueno, Clara (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Menéndez, Pablo (Institució Catalana de Recerca i Estudis Avançats) ; Valencia, Alonso (Institució Catalana de Recerca i Estudis Avançats) ; Javierre, Biola M. (Institut Germans Trias i Pujol)
Long-range interactions between regulatory elements and promoters are key in gene transcriptional control; however, their study requires large amounts of starting material, which is not compatible with clinical scenarios nor the study of rare cell populations. [...]
2023 - 10.1038/s41467-023-35911-8
Nature communications, Vol. 14 Núm. 1 (december 2023) , p. 268  

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