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11.
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24 p, 2.8 MB |
Signatures of selection and environmental adaptation across the goat genome post-domestication
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Bertolini, Francesca (Technical University of Denmark. National Institute of Aquatic Resources) ;
Servin, Bertrand (GenPhySE) ;
Talenti, Andrea (Università degli Studi di Milano. Dipartimento di Medicina Veterinaria) ;
Rochat, Estelle (Ecole Polytechnique Fédérale de Lausanne) ;
Kim, Eui Soo (Recombinetics Inc) ;
Oget, Claire (GenPhySE) ;
Palhière, Isabelle (GenPhySE) ;
Crisà, Alessandra (Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ;
Catillo, Gennaro (Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ;
Steri, Roberto (Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Colli, Licia (Università Cattolica del Sacro Cuore. Dipartimento Di Scienze Animali, Della Nutrizione E Degli Alimenti) ;
Marras, Gabriele (Fondazione Parco Tecnologico Padano) ;
Milanesi, Marco (São Paulo State University. Department of Support, Production and Animal Health) ;
Nicolazzi, Ezequiel (Fondazione Parco Tecnologico Padano) ;
Rosen, Benjamin D. (Animal Genomics and Improvement Laboratory (USA)) ;
Van Tassell, Curtis (Animal Genomics and Improvement Laboratory (USA)) ;
Guldbrandtsen, Bernt (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Sonstegard, Tad S. (Recombinetics Inc) ;
Tosser-Klopp, Gwenola (GenPhySE) ;
Stella, Alessandra (Università Cattolica del S. Cuore) ;
Rothschild, Max F. (Iowa State University. Department of Animal Science) ;
Joost, Stéphane (Ecole Polytechnique Fédérale de Lausanne) ;
Crepaldi, Paola (Università degli Studi di Milano. Dipartimento di Medicina Veterinaria) ;
The AdaptMap consortium
Since goat was domesticated 10,000 years ago, many factors have contributed to the differentiation of goat breeds and these are classified mainly into two types: (i) adaptation to different breeding systems and/or purposes and (ii) adaptation to different environments. [...]
2018 -  10.1186/s12711-018-0421-y
Genetics, selection, evolution, Vol. 50 (November 2018) , art. 57
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12.
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12 p, 1.3 MB |
Genetic inbreeding depression load for morphological traits and defects in the Pura Raza Española horse
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Poyato-Bonilla, Julia (Universidad de Sevilla. Departamento de Ciencias Agroforestales) ;
Perdomo-González, Davinia I. (Universidad de Sevilla. Departamento de Ciencias Agroforestales) ;
Sánchez-Guerrero, María J. (Universidad de Sevilla. Departamento de Ciencias Agroforestales) ;
Varona, Luis (Universidad de Zaragoza. Departamento de Anatomía, Embriología y Genética Animal) ;
Molina, Antonio (Universidad de Córdoba. Departamento de Genética) ;
Casellas Vidal, Joaquim (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Valera, Mercedes (Universidad de Sevilla. Departamento de Ciencias Agroforestales)
Inbreeding is caused by mating between related individuals and is associated with reduced fitness and performance (inbreeding depression). Several studies have detected heterogeneity in inbreeding depression among founder individuals. [...]
2020 - 10.1186/s12711-020-00582-2
Genetics, selection, evolution, Vol. 52 (october 2020)
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13.
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1 p, 573.5 KB |
Correction to : Genome-wide SNP data unveils the globalization of domesticated pigs
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Yang, Bin (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Cui, Leilei (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Traspov, Aleksei (Federal Science Center for Animal Husbandry named after Academy Member L.K. Ernst) ;
Crooijmans, Richard (Wageningen University. Animal Breeding and Genomics) ;
Zinovieva, Natalia (Federal Science Center for Animal Husbandry named after Academy Member L.K. Ernst) ;
Schook, Lawrence B. (University of Illinois. Institute of Genomic Biology) ;
Archibald, Alan L (University of Edinburgh. The Roslin Institute) ;
Gatphayak, Kesinee (Chiang Mai University. Animal and Aquatic Sciences) ;
Knorr, Christophe (University of Göttingen. Department of Animal Sciences) ;
Triantafyllidis, Alex (Aristotle University of Thessaloníki. Department of Genetics, Development and Molecular Biology) ;
Alexandri, Panoraia (Aristotle University of Thessaloníki. Department of Genetics, Development and Molecular Biology) ;
Semiadi, Gono (Lembaga Ilmu Pengetahuan Indonesia. Research Centre for Biology-Zoology Division) ;
Hanotte, Olivier (University of Nottingham. School of Biology) ;
Dias, Deodália (Universidade de Lisboa. Faculdade de Ciências) ;
Dovč, Peter (University of Ljubljana. Department of Animal Science) ;
Uimari, Pekka (University of Helsinki. Department of Agricultural Sciences) ;
Iacolina, Laura (University of Sassari. Department of Science for Nature and Environmental Resources) ;
Scandura, Massimo (University of Sassari. Department of Science for Nature and Environmental Resources) ;
Groenen, Martien A. M. (Wageningen University. Animal Breeding and Genomics) ;
Huang, Lusheng (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Megens, Hendrik-Jan (Wageningen University. Animal Breeding and Genomics)
2020 - 10.1186/s12711-020-00549-3
Genetics, selection, evolution, Vol. 52 (June 2020) . art. 30
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14.
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21 p, 2.5 MB |
A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine
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Gòdia, Marta (Centre de Recerca en Agrigenòmica) ;
Reverter, Antonio (Queensland Bioscience Precinct. CSIRO Agriculture and Food (Australia)) ;
González Prendes, Rayner (Wageningen University & Research. Animal Breeding and Genomics (The Netherlands)) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries. Departament de Genètica i Millora Animal) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Rodríguez Gil, Joan Enric (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Centre de Recerca en Agrigenòmica)
Background: Genetic pressure in animal breeding is sparking the interest of breeders for selecting elite boars with higher sperm quality to optimize ejaculate doses and fertility rates. However, the molecular basis of sperm quality is not yet fully understood. [...]
2020 - 10.1186/s12711-020-00592-0
Genetics, selection, evolution, Vol. 52 (December 2020) , art. 72
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15.
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10 p, 1.3 MB |
A genome-wide analysis of copy number variation in Murciano-Granadina goats
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Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Landi, Vincenzo (Universidad de Córdoba. Departamento de Genética) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Fernández Álvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
Cabrera Pane, Betlem (Centre de Recerca en Agrigenòmica) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Grup de Recerca en Remugants (G2R)) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Universitat Autònoma de Barcelona.
Departament de Ciència Animal i dels Aliments
Background: In this work, our aim was to generate a map of the copy number variations (CNV) segregating in a population of Murciano-Granadina goats, the most important dairy breed in Spain, and to ascertain the main biological functions of the genes that map to copy number variable regions. [...]
2020 - 10.1186/s12711-020-00564-4
Genetics, selection, evolution, Vol. 52 (August 2020) , art. 44
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16.
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11 p, 1.4 MB |
Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions
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Ramírez-Ayala, Lino César (Centre de Recerca en Agrigenòmica) ;
Rocha, Dominique (Institut national de la recherche agronomique. Génétique Animale et Biologie Intégrative) ;
Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica) ;
Leno Colorado, Jordi (Centre de Recerca en Agrigenòmica) ;
Charles, Mathieu (Institut national de la recherche agronomique. Génétique Animale et Biologie Intégrative) ;
Bouchez, Olivier (Institut National de la Recherche Agronomique (França)) ;
Rodríguez Valera, Yoel (Universidad de Granma. Facultad de Ciencias Agropecuarias) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries)
In the early 20th century, Cuban farmers imported Charolais cattle (CHFR) directly from France. These animals are now known as Chacuba (CHCU) and have become adapted to the rough environmental tropical conditions in Cuba. [...]
2021 - 10.1186/s12711-020-00597-9
Genetics, selection, evolution, Vol. 53 (2021)
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17.
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12 p, 2.3 MB |
A multivariate analysis with direct additive and inbreeding depression load effects
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Varona, Luis (Universidad de Zaragoza. Departamento de Anatomía Embriología y Genética Animal, Instituto Agroalimentario de Aragón (IA2)) ;
Altarriba, Juan (Universidad de Zaragoza. Departamento de Anatomía Embriología y Genética Animal, Instituto Agroalimentario de Aragón (IA2)) ;
Moreno, Carlos (Universidad de Zaragoza. Departamento de Anatomía Embriología y Genética Animal, Instituto Agroalimentario de Aragón (IA2)) ;
Martínez-Castillero, María (Università degli Studi di Padova. Dipartimento di Agronomia Animali, Alimenti Risorce Naturali e Ambiente) ;
Casellas Vidal, Joaquim (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Inbreeding is caused by mating between related individuals and its most common consequence is inbreeding depression. Several studies have detected heterogeneity in inbreeding depression among founder individuals, and recently a procedure for predicting hidden inbreeding depression loads associated with founders and the Mendelian sampling of non-founders has been developed. [...]
2019 - 10.1186/s12711-019-0521-3
Genetics, selection, evolution, Vol. 51 (december 2019)
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18.
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19.
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12 p, 2.8 MB |
Genome-wide patterns of homozygosity provide clues about the population history and adaptation of goats
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Bertolini, Francesca (Iowa State University. Department of Animal Science) ;
Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ;
Marras, Gabriele (Fondazione Parco Tecnologico Padano) ;
Nicolazzi, Ezequiel L. (Fondazione Parco Tecnologico Padano (PTP)) ;
Rothschild, Max F. (Iowa State University. Department of Animal Science) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
Background: Patterns of homozygosity can be influenced by several factors, such as demography, recombination, and selection. Using the goat SNP50 BeadChip, we genotyped 3171 goats belonging to 117 populations with a worldwide distribution. [...]
2018 - 10.1186/s12711-018-0424-8
Genetics, selection, evolution, Vol. 50 (2018) , art. 59
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20.
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17 p, 1.8 MB |
Integrating genome-wide co-association and gene expression to identify putative regulators and predictors of feed efficiency in pigs
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Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries) ;
Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries) ;
Sánchez Serrano, Juan Pablo (Institut de Recerca i Tecnologia Agroalimentàries) ;
González Prendes, Rayner (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Quintanilla, Raquel (Institut de Recerca i Tecnologia Agroalimentàries)
Background: Feed efficiency (FE) has a major impact on the economic sustainability of pig production. We used a systems-based approach that integrates single nucleotide polymorphism (SNP) co-association and gene-expression data to identify candidate genes, biological pathways, and potential predictors of FE in a Duroc pig population. [...]
2019 - 10.1186/s12711-019-0490-6
Genetics, selection, evolution, Vol. 51 (September 2019) , art. 48
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