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11.
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15 p, 1.3 MB |
PRDM9 diversity at fine geographical scale reveals contrasting evolutionary patterns and functional constraints in natural populations of house mice
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Vara González, Covadonga (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Capilla Pérez, Laia (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Ferretti, Luca (University of Oxford. Big Data Institute) ;
Ledda, Alice (Imperial College London. Department for Infectious Disease Epidemiology) ;
Sánchez Guillén, Rosa Ana (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Gabriel, Sofia I. (Universidade de Lisboa. Centro de Estudos do Ambiente e do Mar) ;
Albert Lizandra, Guillermo (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Florit-Sabater, Beatriu (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Bello Rodríguez, Judith (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Searle, Jeremy B. (Cornell University. Department of Ecology and Evolutionary Biology) ;
Mathias, Maria L. (Universidade de Lisboa. Centro de Estudos do Ambiente e do Mar) ;
Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia)
One of the major challenges in evolutionary biology is the identification of the genetic basis of postzygotic reproductive isolation. Given its pivotal role in this process, here we explore the drivers that may account for the evolutionary dynamics of the PRDM9 gene between continental and island systems of chromosomal variation in house mice. [...]
2019 -  10.1093/molbev/msz091
Molecular biology and evolution, Vol. 36 Núm. 8 (january 2019) , p. 1686-1700
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12.
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18 p, 641.8 KB |
Return to the sea, get huge, beat cancer : An analysis of Cetacean genomes including an assembly for the humpback whale (Megaptera novaeangliae)
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Tollis, Marc (Northern Arizona University. School of Informatics, Computing and Cyber Systems) ;
Robins, Jooke (Center for Coastal Studies (USA)) ;
Webb, Andrew E. (Temple University. Center for Computational Genetics and Genomics) ;
Kuderna, Lukas (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Caulin, Aleah F. (University of Pennsylvania. Genomics and Computational Biology Program) ;
Garcia, Jacinda D. (Arizona State University. School of Life Sciences) ;
Bèrubè, Martine (University of Groningen. Groningen Institute of Evolutionary Life Sciences) ;
Pourmand, Nader (University of California Santa Cruz. Jack Baskin School of Engineering) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
O'Connell, Mary J. (University of Nottingham. Computational and Molecular Evolutionary Biology Research Group) ;
Palsbøll, Per J. (University of Groningen. Groningen Institute of Evolutionary Life Sciences) ;
Maley, Carlo C. (Arizona State University. School of Life Sciences)
Cetaceans are a clade of highly specialized aquatic mammals that include the largest animals that have ever lived. The largest whales can have ∼1,000× more cells than a human, with long lifespans, leaving them theoretically susceptible to cancer. [...]
2019 - 10.1093/molbev/msz099
Molecular biology and evolution, Vol. 36, Issue 8 (August 2019) , p. 1746-1763
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13.
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38 p, 1.7 MB |
Transposon insertions, structural variations, and SNPs contribute to the evolution of the melon genome
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Sanseverino, Walter (Centre de Recerca en Agrigenòmica) ;
Hénaff, Elizabeth (Centre de Recerca en Agrigenòmica) ;
Vives, Cristina (Centre de Recerca en Agrigenòmica) ;
Pinosio, Sara (Universita degli studi di Udine. Dipartimento di szience agrarie e ambientali) ;
Burgos-Paz, William (Centre de Recerca en Agrigenòmica) ;
Morgante, Michele (Universita degli studi di Udine. Dipartimento di szience agrarie e ambientali) ;
Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica)
The availability of extensive databases of crop genome sequences should allow analysis of crop variability at an unprecedented scale, which should have an important impact in plant breeding. However, up to now the analysis of genetic variability at the whole-genome scale has been mainly restricted to single nucleotide polymorphisms (SNPs). [...]
2015 - 10.1093/molbev/msv152
Molecular biology and evolution, Vol. 32, issue 10 (Oct. 2015) , p. 2760-74
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14.
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14 p, 1.1 MB |
Complex evolutionary history of the mammalian histone H1.1-H1.5 gene family
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Ponte Marull, Immaculada (Universitat Autònoma de Barcelona. Departament de Bioquímica i de Biologia Molecular) ;
Romero, Devani (Universitat Autònoma de Barcelona. Departament de Bioquímica i de Biologia Molecular) ;
Yero, Daniel (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Suau León, Pere (Universitat Autònoma de Barcelona. Departament de Bioquímica i de Biologia Molecular) ;
Roque Córdova, Alicia (Universitat Autònoma de Barcelona. Departament de Bioquímica i de Biologia Molecular)
H1 is involved in chromatin higher-order structure and gene regulation. H1 has a tripartite structure. The central domain is stably folded in solution, while the N- and C-terminal domains are intrinsically disordered. [...]
2017 - 10.1093/molbev/msw241
Molecular biology and evolution, Vol. 34, issue 3 (March 2017) , p. 545-558
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15.
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17 p, 500.1 KB |
DnaSP 6 : DNA sequence polymorphism analysis of large data sets
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Rozas, Julio (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Ferrer-Mata, Albert (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Sánchez-DelBarrio, Juan Carlos (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Guirao-Rico, Sara (Centre de Recerca en Agrigenòmica) ;
Librado, Pablo (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica) ;
Sánchez-Gracia, Alejandro (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística)
We present version 6 of the DnaSP (DNA Sequence Polymorphism) software, a new version of the popular tool for performing exhaustive population genetic analyses on multiple sequence alignments. This major upgrade incorporates novel functionalities to analyse large datasets, such as those generated by high-throughput sequencing (HTS) technologies. [...]
2017 - 10.1093/molbev/msx248
Molecular biology and evolution, Vol. 34, issue 12 (Dec. 2017) p. 3299-3302
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16.
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16 p, 839.7 KB |
Natural Selection in the Great Apes
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Cagan, Alexander (Max Planck Institute for Evolutionary Anthropology. Department of Evolutionary Genetics) ;
Theunert, Christoph (University of California. Department of Integrative Biology) ;
Laayouni, Hafid (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Santpere, Gabriel (Yale University School of Medicine. Department of Neuroscience) ;
Pybus, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Casals, Ferran (Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut) ;
Prüfer, Kay (Max Planck Institute for Evolutionary Anthropology. Department of Evolutionary Genetics) ;
Navarro, Arcadi, 1969- (Institució Catalana de Recerca i Estudis Avançats) ;
Marques-Bonet, Tomas 1975- (Institució Catalana de Recerca i Estudis Avançats) ;
Bertranpetit, Jaume (University of Cambridge. Department of Archaeology and Anthropology, Leverhulme Centre for Human Evolutionary Studies) ;
Andrés, Aida M. (Max Planck Institute for Evolutionary Anthropology. Department of Evolutionary Genetics)
Natural selection is crucial for the adaptation of populations to their environments. Here, we present the first global study of natural selection in the Hominidae (humans and great apes) based on genome-wide information from population samples representing all extant species (including most subspecies). [...]
2016 - 10.1093/molbev/msw215
Molecular biology and evolution, Vol. 33, Núm. 12 (desembre 2016) , p. 3268-3283
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17.
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15 p, 1.0 MB |
R2d2 drives selfish sweeps in the house mouse
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Didion, John P. (Carolina Center for Genome Science) ;
Morgan, Andrew P. (Carolina Center for Genome Science) ;
Yadgary, Liran (Carolina Center for Genome Science) ;
Bell, Timothy A. (Carolina Center for Genome Science) ;
McMullan, Rachel C. (Carolina Center for Genome Science) ;
Ortiz de Solorzano, Lydia (Carolina Center for Genome Science) ;
Britton-Davidian, Janice (Université de Montpellier. Institut des Sciences de l'Evolution) ;
Bult, Carol J. (The Jackson Laboratory) ;
Campbell, Karl J. (The University of Queensland. School of Geography, Planning & Environmental Management) ;
Castiglia, Riccardo (Università degli studi di Roma "La Sapienza") ;
Ching, Yung-Hao (Tzu Chi University. Department of Molecular Biology and Human Genetics) ;
Chunco, Amanda J. (Elon University. Department of Environmental Studies) ;
Crowley, James J. (The University of North Carolina at Chapel Hill. Department of Genetics) ;
Chesler, Elissa J. (The Jackson Laboratory) ;
Förster, Daniel W. (Leibniz-Institut für Zoo- und Wildtierforschung. Department of Evolutionary Genetics) ;
French, John E. (National Institute of Environmental Health Sciences. National Toxicology Program) ;
Gabriel, Sofia I. (Universidade de Lisboa. Department of Animal Biology) ;
Gatti, Daniel M. (The Jackson Laboratory) ;
Garland, Theodore (University of California, Riverside. Department of Biology) ;
Giagia-Athanasopoulou, Eva B. (University of Patras. Department of Biology) ;
Giménez, Mabel D. (Universidad Nacional de Misiones (Argentina). Instituto de Biología Subtropical) ;
Grize, Sofia A. (Universität Zürich. Institute of Evolutionary Biology and Environmental Studies) ;
Gündüz, İslam (University of Ondokuz Mayis. Department of Biology, Faculty of Arts and Sciences) ;
Holmes, Andrew (National Institutes of Health. National Institute on Alcohol Abuse and Alcoholism) ;
Hauffe, Heidi C. (Fondazione Edmund Mach. Department of Biodiversity and Molecular Ecology, Research and Innovation Centre) ;
Herman, Jeremy S. (National Museums Scotland. Department of Natural Sciences) ;
Holt, James M. (The University of North Carolina at Chapel Hill. Department of Computer Science) ;
Hua, Kunjie (The University of North Carolina at Chapel Hill. Department of Genetics) ;
Jolley, Wesley J. (Island Conservation (Santa Cruz, Califòrnia)) ;
Lindholm, Anna K. (Universität Zürich. Institute of Evolutionary Biology and Environmental Studies) ;
López-Fuster, María J. (Universitat de Barcelona. Facultat de Biologia) ;
Mitsainas, George (University of Patras. Department of Biology) ;
da Luz Mathias, Maria (Universidade de Lisboa. Department of Animal Biology) ;
McMillan, Leonard (The University of North Carolina at Chapel Hill. Department of Computer Science) ;
Ramalhinho, Maria da Graça Morgado (Universidade de Lisboa. Department of Animal Biology) ;
Rehermann, Barbara (National Institute of Diabetes and Digestive and Kidney Diseases (Bethesda, Estats Units d'Amèrica)) ;
Rosshart, Stephan P. (National Institute of Diabetes and Digestive and Kidney Diseases (Bethesda, Estats Units d'Amèrica)) ;
Searle, Jeremy B. (Cornell University. Department of Ecology and Evolutionary Biology) ;
Shiao, Meng-Shin (Mahidol University. Faculty of Medicine) ;
Solano, Emanuela (Università degli studi di Roma "La Sapienza") ;
Svenson, Karen L. (The Jackson Laboratory) ;
Thomas-Laemont, Patricia (Elon University. Department of Environmental Studies) ;
Threadgill, David W. (Texas A&M University. Department of Molecular and Cellular Medicine) ;
Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Weinstock, George M. (Jackson Laboratory for Genomic Medicine) ;
Pomp, Daniel (Carolina Center for Genome Science) ;
Churchill, Gary A. (The Jackson Laboratory) ;
Pardo-Manuel de Villena, Fernando (Carolina Center for Genome Science)
A selective sweep is the result of strong positive selection driving newly occurring or standing genetic variants to fixation, and can dramatically alter the pattern and distribution of allelic diversity in a population. [...]
2016 - 10.1093/molbev/msw036
Molecular biology and evolution, Vol. 33, issue 6 (June 2016) , p. 1381-1395
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18.
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14 p, 652.3 KB |
Adaptive evolution is substantially impeded by Hill-Robertson interference in Drosophila
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Castellano Esteve, David (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Coronado-Zamora, Marta (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Campos, Jose L. (University of Edinburgh. Institute of Evolutionary Biology, School of Biological Sciences) ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Eyre-Walker, Adam (University of Sussex. Centre for the Study of Evolution, School of Life Sciences) ;
Universitat Autònoma de Barcelona.
Departament de Genètica i de Microbiologia
Hill-Robertson interference (HRi) is expected to reduce the efficiency of natural selection when two or more linked selected sites do not segregate freely, but no attempt has been done so far to quantify the overall impact of HRi on the rate of adaptive evolution for any given genome. [...]
2015 - 10.1093/molbev/msv236
Molecular biology and evolution, Vol. 33, Núm. 2 (October 2015) , p. 442-455
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19.
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20.
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12 p, 525.4 KB |
Recombination rates and genomic shuffling in human and chimpanzee : a new twist in the chromosomal speciation theory
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Farré, Marta (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia) ;
Micheletti, Diego (Centre de Recerca en Agrigenòmica) ;
Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
A long-standing question in evolutionary biology concerns the effect of recombination in shaping the genomic architecture of organisms and, in particular, how this impacts the speciation process. Despite efforts employed in the last decade, the role of chromosomal reorganizations in the human-chimpanzee speciation process remains unresolved. [...]
2013 - 10.1093/molbev/mss272
Molecular biology and evolution, Vol. 30, issue 4 (April 2013) , p. 853-864
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