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14 p, 2.8 MB |
Critical assessment of protein intrinsic disorder prediction
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Necci, Marco (University of Padua. Department of Biomedical Sciences) ;
Piovesan, Damiano (University of Padua. Department of Biomedical Sciences) ;
Hoque, M. T. (University of New Orleans. Computer Science) ;
Walsh, Ian (Agency for Science, Technology and Research. Bioprocessing Technology Institute) ;
Iqbal, Sumaiya (Broad Institute of MIT and Harvard. Center for Psychiatric Research) ;
Vendruscolo, Michele (University of Cambridge. Centre for Misfolding Diseases. Department of Chemistry) ;
Sormanni, Pietro (University of Cambridge. Centre for Misfolding Diseases. Department of Chemistry) ;
Wang, Chen (Columbia University. Department of Medicine) ;
Raimondi, Daniele (ESAT-STADIUS. KU Leuven) ;
Sharma, Ronesh (Fiji National University) ;
Zhou, Yaoqi (Griffith University. Institute for Glycomics and School of Information and Communication Technology) ;
Litfin, Thomas (Griffith University. Institute for Glycomics and School of Information and Communication Technology) ;
Galzitskaya, Oxxana Valerianovna (Russian Academy of Sciences. Institute of Theoretical and Experimental Biophysics) ;
Lobanov, Michail Yu (Russian Academy of Sciences. Institute of Protein Research) ;
Vranken, Wim (Vrije Universiteit Brussel. Interuniversity Institute of Bioinformatics in Brussels) ;
Wallner, Björn (Linköping University. Department of Physics, Chemistry and Biology) ;
Mirabello, Claudio (Linköping University. Department of Physics, Chemistry and Biology) ;
Malhis, Nawar (University of British Columbia. Michael Smith Laboratories) ;
Dosztányi, Zsuzsanna (Eötvös Loránd University. Department of Biochemistry) ;
Erdős, Gábor (Eötvös Loránd University. Department of Biochemistry) ;
Mészáros, Bálint (European Molecular Biology Laboratory. Structural and Computational Biology Unit) ;
Gao, Jianzhao (Nankai University. School of Mathematical Sciences and LPMC) ;
Wang, Kui (Nankai University. School of Mathematical Sciences and LPMC) ;
Hu, Gang (Nankai University. School of Statistics and Data Science) ;
Wu, Zhonghua (Nankai University. School of Mathematical Sciences and LPMC) ;
Sharma, Alok (University of the South Pacific. School of Engineering and Physics) ;
Hanson, Jack (Griffith University. School of Engineering and Built Environment. Signal Processing Laboratory Griffith University. School of Engineering and Built Environment. Signal Processing Laboratory Signal Processing Laboratory. School of Engineering and Built Environment. Griffith University) ;
Callebaut, Isabelle (Sorbonne Université. Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie. Muséum National d'Histoire Naturelle) ;
Bitard-Feildel, Tristan (Sorbonne Université. Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie. Muséum National d'Histoire Naturelle) ;
Orlando, Gabriele (VIB-KU Leuven. Switch Laboratorium.) ;
Peng, Zhenling (Tianjin University. Center for Applied Mathematics) ;
Xu, Jinbo (Toyota Technological Institute at Chicago) ;
Wang, Sheng (Toyota Technological Institute at Chicago) ;
Jones, David T. (University College London) ;
Cozzetto, Domenico (University College London) ;
Meng, Fanchi (University of Alberta. Department of Electrical and Computer Engineering) ;
Yan, Jing (University of Alberta. Department of Electrical and Computer Engineering) ;
Gsponer, Jörg (University of British Columbia. Michael Smith Laboratories) ;
Cheng, Jianlin (University of Missouri. Department of Electrical Engineering and Computer Science) ;
Wu, Tianqi (University of Missouri. Department of Electrical Engineering and Computer Science) ;
Kurgan, Lukasz (Virginia Commonwealth University. Department of Computer Science) ;
Promponas, Vasilis J. (University of Cyprus. Department of Biological Sciences. Bioinformatics Research Laboratory) ;
Tamana, Stella (University of Cyprus. Department of Biological Sciences. Bioinformatics Research Laboratory) ;
Marino-Buslje, Cristina (Fundación Instituto Leloir (Buenos Aires, Argentina)) ;
Martínez-Pérez, Elisabeth (Fundación Instituto Leloir (Buenos Aires, Argentina)) ;
Chasapi, Anastasia (Centre for Research & Technology Hellas. Chemical Process & Energy Resources Institute) ;
Ouzounis, Christos (Centre for Research & Technology Hellas. Chemical Process & Energy Resources Institute) ;
Dunker, A. Keith (Indiana University School of Medicine. Center for Computational Biology and Bioinformatics) ;
Kajava, Andrey V (University of Montpellier. Centre de Recherche en Biologie cellulaire de Montpellier) ;
Leclercq, Jeremy Y. (University of Montpellier. Centre de Recherche en Biologie cellulaire de Montpellier) ;
Aykac-Fas, Burcu (Danish Cancer Society Research Center) ;
Lambrughi, Matteo (Danish Cancer Society Research Center) ;
Maiani, Emiliano (Danish Cancer Society Research Center) ;
Papaleo, Elena (Danish Cancer Society Research Center) ;
Chemes, Lucía Beatriz (Universidad Nacional de San Martín. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas) ;
Álvarez, Lucía (Universidad Nacional de San Martín. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas) ;
González-Foutel, Nicolás S. (Universidad Nacional de San Martín. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas) ;
Iglesias, Valentin (Universitat Autònoma de Barcelona. Departament de Bioquímica i de Biologia Molecular) ;
Pujols Pujol, Jordi (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Ventura, Salvador (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Palopoli, Nicolas (Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología) ;
Benítez, Guillermo I (Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología) ;
Parisi, Gustavo (Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología) ;
Bassot, Claudio (Stockholm University. Department of Biochemistry and Biophysics and Science for Life Laboratory) ;
Elofsson, Arne (Stockholm University. Department of Biochemistry and Biophysics and Science for Life Laboratory) ;
Govindarajan, Sudha (Stockholm University. Department of Biochemistry and Biophysics and Science for Life Laboratory) ;
Lamb, John (Stockholm University. Department of Biochemistry and Biophysics and Science for Life Laboratory) ;
Salvatore, Marco (Copenhagen University. Department of Biology) ;
Hatos, András (Università di Padova. Dipartimento di Scienze Biomediche) ;
Monzon, Alexander Miguel (Università di Padova. Dipartimento di Scienze Biomediche) ;
Bevilacqua, Martina (Università di Padova. Dipartimento di Scienze Biomediche) ;
Mičetić, Ivan (Università di Padova. Dipartimento di Scienze Biomediche) ;
Minervini, Giovanni (Università di Padova. Dipartimento di Scienze Biomediche) ;
Paladin, Lisanna (Università di Padova. Dipartimento di Scienze Biomediche) ;
Quaglia, Federica (Università di Padova. Dipartimento di Scienze Biomediche) ;
Leonardi, Emanuela (Università di Padova) ;
Davey, Norman E. (The Institute of Cancer Research. Chelsea) ;
Horvath, Tamas (Research Centre for Natural Sciences. Institute of Enzymology) ;
Kovacs, Orsolya Panna (Research Centre for Natural Sciences. Institute of Enzymology) ;
Murvai, Nikoletta (Research Centre for Natural Sciences. Institute of Enzymology) ;
Pancsa, Rita (Research Centre for Natural Sciences. Institute of Enzymology) ;
Schad, Eva (Research Centre for Natural Sciences. Institute of Enzymology) ;
Szabo, Beata (Research Centre for Natural Sciences. Institute of Enzymology) ;
Tantos, Agnes (Research Centre for Natural Sciences. Institute of Enzymology) ;
Macedo-Ribeiro, Sandra (Universidade do Porto. Instituto de Biologia Molecular e Celular and Instituto de Investigação e Inovação em Saúde) ;
Manso, Jose Antonio (Universidade do Porto. Instituto de Biologia Molecular e Celular and Instituto de Investigação e Inovação em Saúde) ;
Barbosa Pereira, Pedro José (Universidade do Porto. Instituto de Biologia Molecular e Celular and Instituto de Investigação e Inovação em Saúde) ;
Davidović, Radoslav (University of Belgrade. Vinča Institute of Nuclear Sciences - National Institute of thе Republic of Serbia.) ;
Veljkovic, Nevena (University of Belgrade. Vinča Institute of Nuclear Sciences - National Institute of thе Republic of Serbia.) ;
Hajdu-Soltész, Borbála (Eötvös Loránd University. Department of Biochemistry) ;
Pajkos, Mátyás (Eötvös Loránd University. Department of Biochemistry) ;
Szaniszló, Tamás (Eötvös Loránd University. Department of Biochemistry) ;
Guharoy, Mainak (Vrije Universiteit Brussel. Structural Biology Brussels) ;
Lazar, Tamas (Vrije Universiteit Brussel. Structural Biology Brussels) ;
Macossay-Castillo, Mauricio (Vrije Universiteit Brussel. Structural Biology Brussels) ;
Tompa, Peter (Vrije Universiteit Brussel. Structural Biology Brussels) ;
Tosatto, Silvio (University of Padua. Department of Biomedical Sciences)
Intrinsically disordered proteins, defying the traditional protein structure-function paradigm, are a challenge to study experimentally. Because a large part of our knowledge rests on computational predictions, it is crucial that their accuracy is high. [...]
2021 -  10.1038/s41592-021-01117-3
Nature Methods, Vol. 18 (May 2021) , p. 472-481
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49 p, 4.3 MB |
Tracking five millennia of horse management with extensive ancient genome time series
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Fages, Antoine (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Hanghøj, Kristian (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Khan, Naveed (Abdul Wali Khan University. Department of Biotechnology) ;
Gaunitz, Charleen (Københavns Universitet. Sektion for Geogenetik) ;
Seguin-Orlando, Andaine (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Leonardi, Michela (Københavns Universitet. Sektion for Geogenetik) ;
McCrory Constantz, Christian (Københavns Universitet. Sektion for Geogenetik) ;
Gamba, Cristina (Københavns Universitet. Sektion for Geogenetik) ;
Al-Rasheid, Khaled A. S. (King Saud University. Zoology Department) ;
Albizuri, Silvia (Universitat de Barcelona. Seminari d'Estudis i Recerques Prehistòriques) ;
Alfarhan, Ahmed H. (King Saud University. Zoology Department) ;
Allentoft, Morten (Københavns Universitet. Sektion for Geogenetik) ;
Alquraishi, Saleh (King Saud University. Zoology Department) ;
Anthony, David (Hartwick College. Anthropology Department) ;
Baimukhanov, Nurbol (Shejire DNA project) ;
Barrett, James H. (University of Cambridge. Department of Archaeology) ;
Bayarsaikhan, Jamsranjav (National Museum of Mongolia) ;
Benecke, Norbert (Deutsches Archäologisches Institut) ;
Bernáldez-Sánchez, Eloísa (Instituto Andaluz del Patrimonio Historico. Laboratorio de Paleontologia y Paleobiologia) ;
Berrocal-Rangel, Luis (Universidad Autónoma de Madrid. Departamento de Prehistoria y Arqueología) ;
Biglari, Fereidoun (National Museum of Iran. Department of Paleolithic) ;
Boessenkool, Sanne (Universitetet i Oslo. Senter for økologisk og evolusjonær syntese) ;
Boldgiv, Bazartseren (National University of Mongolia. Ecology Group) ;
Brem, Gottfried (Vetmeduni Vienna. Institut für Tierzucht und Genetik) ;
Brown, Dorcas (Hartwick College. Anthropology Department) ;
Burger, Joachim (Johannes Gutenberg-Universität Mainz. Palaeogenetics Group) ;
Crubézy, Eric (Université de Toulouse. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Daugnora, Linas (Klaipėda university. Osteological material research laboratory) ;
Davoudi, Hossein (National Museum of Iran. Department of Osteology) ;
Damgaard, Peter de Barros (Københavns Universitet. Sektion for Geogenetik) ;
Chorro y de Villa-Ceballos, María de los Ángeles de (Centro de Biología Molecular Severo Ochoa) ;
Deschler-Erb, Sabine (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Detry, Cleia (UNIARQ) ;
Dill, Nadine (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Oom, Maria do Mar (Universidade de Lisboa. Centre for Ecology, Evolution and Environmental Changes) ;
Dohr, Anna (Institut für Ur- und Frühgeschichte und Archäologie der römischen Provinzen) ;
Ellingvåg, Sturla (Explico Foundation) ;
Erdenebaatar, Diimaajav (Ulaanbaatar State University. Department of Archaeology) ;
Fathi, Homa (National Museum of Iran. Department of Osteology) ;
Felkel, Sabine (Vetmeduni Vienna. Institut für Tierzucht und Genetik) ;
Fernández-Rodríguez, Carlos (Universidad de León. Departamento de Historia) ;
García-Viñas, Esteban (Universidad Pablo de Olavide. Departamento de Sistemas Físicos, Químicos y Naturales) ;
Germonpré, Mietje (Muséum des sciences naturelles de Belgique) ;
Granado, José D. (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Hallsson, Jón H. (The Agricultural University of Iceland. Faculty of Agricultural and Environmental Sciences) ;
Hemmer, Helmut (Johannes Gutenberg-Universität Mainz. Institut für Organismische und Molekulare Evolutionsbiologie) ;
Hofreiter, Michael (Universität Potsdam. Instituts für Biochemie und Biologie) ;
Kasparov, Aleksei (Russian Academy of Sciences. Institute for the History of Material Culture) ;
Khasanov, Mutalib (Archaeology Institute of Samarkand) ;
Khazaeli, Roya (University of Tehran. Archaezoology section) ;
Kosintsev, Pavel (Urals Branch of the Russian Academy of Sciences. Institute of Plant and Animal Ecology) ;
Kristiansen, Kristian (Göteborgs universitet. Institutionen för historiska studier) ;
Kubatbek, Tabaldiev (Kyrgyz-Turkish Manas University. Department of History) ;
Kuderna, Lukas (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Kuznetsov, Pavel (Samara State University of Social Science and Education) ;
Laleh, Haeedeh (University of Tehran. Department of Archaeology) ;
Leonard, Jennifer A. (Estación Biológica de Doñana) ;
Lhuillier, Johanna (Maison de l'Orient et de la Méditerranée. Laboratoire Archéorient) ;
Liesau von Lettow-Vorbeck, Corina (Universidad Autónoma de Madrid. Departamento de Prehistoria y Arqueología) ;
Logvin, Andrey (Kostanay State University. Laboratory for Archaeological Research) ;
Lõugas, Lembi (Tallinn University. Archaeological Research Collection) ;
Ludwig, Arne (Leibniz-Institut für Zoo- und Wildtierforschung) ;
Luis, Cristina (Universidade de Lisboa. Centro Interuniversitário de História das Ciências e da Tecnologia) ;
Arruda, Ana Margarida (Uniarq) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Matoso Silva, Raquel. (Instituto Universitário de Lisboa) ;
Merz, Victor (S.Toraighyrov Pavlodar State University) ;
Mijiddorj, Enkhbayar (Ulaanbaatar State University. Department of Archaeology) ;
Miller, Bryan K. (University of Oxford. Faculty of History) ;
Monchalov, Oleg (Samara State University of Social Science and Education) ;
Mohaseb, Fatemeh A. (National Museum of Iran. Department of Osteology) ;
Morales, Arturo (Universidad Autónoma de Madrid. Laboratorio de Arqueozoología) ;
Nieto-Espinet, Ariadna (Universitat de Lleida. Departament d'Història. Grup d'Investigació Prehistòrica) ;
Nistelberger, Heidi (Universitetet i Oslo. Institutt for biovitenskap) ;
Onar, Vedat Onar (İstanbul Üniversitesi - Cerrahpaşa. Faculty of Veterinary Medicine. Department of Anatomy) ;
Pálsdóttir, Albína H. (The Agricultural University of Icelan. Faculty of Agricultural and Environmental Sciences) ;
Pitulko, Vladimir (Russian Academy of Sciences. Institute for the History of Material Culture) ;
Pitskhelauri, Konstantin (Ivane Javakhishvili Tbilisi State University) ;
Pruvost, Mélanie (Université de Bordeaux) ;
Rajic Sikanjic, Petra (Institute for Anthropological Research (Zagreb, Croàcia)) ;
Rapan Papeša, Anita (Vinkovci Municipal Museum (Croàcia)) ;
Roslyakova, Natalia u Samara State University of Social Science and Education ;
Sardari, Alireza (Iranian Center for Archaeological Research) ;
Sauer, Eberhard (The University of Edinburgh. School of History, Classics and Archaeology) ;
Schafberg, Renate (Martin-Luther-Universität Halle-Wittenberg. Central Natural Science Collections) ;
Scheu, Amelie (Johannes Gutenberg-Universität Mainz. Institut für Organismische und Molekulare Evolutionsbiologie) ;
Schibler, Jörg (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Schlumbaum, Angela (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Serrand, Nathalie (Muséum National d'Histoire Naturelle (Paris, França)) ;
Serres-Armero, Aitor (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Shapiro, Beth (University of California. Department of Ecology and Evolutionary Biology) ;
Sheikhi Seno, Shiva (National Museum of Iran. Department of Osteology) ;
Shevnina, Irina (Kostanay State University. Laboratory for Archaeological Research) ;
Shidrang, Sonia (University of Kashan. aeedi Institute for Advanced Studies) ;
Southon, John (University of California. Department Earth System Science) ;
Star, Bastiaan (Universitetet i Oslo. Senter for økologisk og evolusjonær syntese) ;
Sykes, Naomi (University of Nottingham. Department of Archaeology) ;
Taheri, Kamal (Kermanshah Regional Water Authority (Iran)) ;
Taylor, William (Max-Planck-Institut für Menschheitsgeschichte) ;
Teegen, Wolf-Rüdiger (Institut für Ur- und Frühgeschichte und Archäologie der römischen Provinzen) ;
Trbojević Vukičević, Tajana (University of Zagreb. Faculty of Veterinary Medicine. Department of Anatomy, Histology and Embryology) ;
Trixl, Simon (Institut für Ur- und Frühgeschichte und Archäologie der römischen Provinzen) ;
Tumen, Dashzeveg (National University of Mongolia. Department of Anthropology and Archaeology) ;
Undrakhbold, Sainbileg (National University of Mongolia. Ecology Group) ;
Usmanova, Emma (Buketov Karaganda State University. Saryarka Archaeological Institute) ;
Vahdati, Ali (Iranian Center for Archaeological Research) ;
Valenzuela-Lamas, Silvia (Institució Milà i Fontanals) ;
Viegas, Catarina (Universidade de Lisboa. Faculdade de Letras. Centro de Arqueologia) ;
Wallner, Barbara (Vetmeduni Vienna. Institut für Tierzucht und Genetik) ;
Weinstock, Jaco (University of Southampton. Faculty of Humanities) ;
Zaibert, Victor (Al Farabi Kazakh National University. Scientific Research Institute of Archaeology and Steppe Civilizations) ;
Clavel, Benoit (Muséum National d'Histoire Naturelle, Archéozoologie, Archéobotanique, Sociétés, Pratiques et Environnements (Paris, França)) ;
Lepetz, Sébastien (Muséum National d'Histoire Naturelle, Archéozoologie, Archéobotanique, Sociétés, Pratiques et Environnements (Paris, França)) ;
Mashkour, Marjan (National Museum of Iran. Department of Osteology) ;
Helgason, Agnar (deCODE Genetics (Reykjavík, Islàndia)) ;
Stefánsson, Kári (deCODE Genetics (Reykjavík, Islàndia)) ;
Barrey, Eric (AgroParisTech) ;
Willerslev, Eske (Københavns Universitet. Sektion for Geogenetik) ;
Outram, Alan K. (University of Exeter. Department of Archaeology) ;
Librado, Pablo (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Orlando, Ludovic (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse)
Horse domestication revolutionized warfare and accelerated travel, trade, and the geographic expansion of languages. Here, we present the largest DNA time series for a non-human organism to date, including genome-scale data from 149 ancient animals and 129 ancient genomes (≥1-fold coverage), 87 of which are new. [...]
2019 - 10.1016/j.cell.2019.03.049
Cell, Vol. 177, issue 6 (May 2019) , p. 1419-1435.e31
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