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34 p, 19.3 MB |
A compendium of genetic regulatory effects across pig tissues
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Teng, Jinyan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Gao, Yahui (University of Maryland. Department of Animal and Avian Sciences) ;
Yin, Hongwei (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Bai, Zhonghao (The University of Edinburgh) ;
Liu, Shuli (Westlake University) ;
Zeng, Haonan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Bai, Lijing (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Cai, Zexi (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Zhao, Bingru (China Agricultural University) ;
Li, Xiujin (Zhongkai University of Agriculture and Engineering) ;
Xu, Zhiting (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Lin, Qing (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Pan, Zhangyuan (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ;
Yang, Wenjing (University of California, Davis. Department of Animal Science) ;
Yu, Xiaoshan (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer) ;
Guan, Dailu (University of California. Department of Animal Science) ;
Hou, Yali (Chinese Academy of Sciences and China National Center for Bioinformation) ;
Keel, Brittney N. (U.S. Meat Animal Research Center) ;
Rohrer, Gary A. (U.S. Meat Animal Research Center) ;
Lindholm-Perry, Amanda K. (U.S. Meat Animal Research Center) ;
Oliver, William T. (U.S. Meat Animal Research Center) ;
Ballester Devis, Maria (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Crespo-Piazuelo, Daniel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Quintanilla, Raquel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Canela-Xandri, Oriol (University of Edinburgh) ;
Rawlik, Konrad (University of Edinburgh. Baillie Gifford Pandemic Science Hub) ;
Xia, Charley (University of Edinburgh. Department of Psychology) ;
Yao, Yuelin (University of Edinburgh) ;
Zhao, Qianyi (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Yao, Wenye (Wageningen University and Research) ;
Yang, Liu (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Li, Houcheng (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Zhang, Huicong (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Liao, Wang (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ;
Chen, Tianshuo (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ;
Karlskov-Mortensen, Peter (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Consejo Superior de Investigaciones Científicas) ;
Giuffra, Elisabetta (Paris-Saclay University) ;
Wu, Jun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Cai, Xiaodian (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Diao, Shuqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Pan, Xiangchun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Wei, Chen (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Li, Jinghui (University of California, Davis. Department of Animal Science) ;
Cheng, Hao (University of California, Davis. Department of Animal Science) ;
Wang, Sheng (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Su, Guosheng (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Sahana, Goutam (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Lund, Mogens Sandø (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Dekkers, Jack C. M. (Iowa State University. Department of Animal Science) ;
Kramer, Luke (Iowa State University. Department of Animal Science) ;
Tuggle, Christopher K. (Iowa State University. Department of Animal Science) ;
Corbett, Ryan (Iowa State University. Department of Animal Science) ;
Groenen, Martien A. M. (Wageningen University and Research. Animal Breeding and Genomics) ;
Madsen, Ole (Wageningen University and Research. Animal Breeding and Genomics) ;
Gòdia, Marta (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Rocha, Dominique (Paris-Saclay University) ;
Charles, Mathieu (Paris-Saclay University) ;
Li, Cong-jun (Henry A. Wallace Beltsville Agricultural Research Center) ;
Pausch, Hubert (Animal Genomics) ;
Hu, Xiaoxiang (China Agricultural University. State Key Laboratory of Agrobiotechnology) ;
Frantz, Laurent (Queen Mary University of London. School of Biological and Behavioural Sciences) ;
Luo, Yonglun (Qingdao-Europe Advanced Institute for Life Sciences. Lars Bolund Institute of Regenerative Medicine) ;
Lin, Lin (Aarhus University Hospital. Steno Diabetes Center Aarhus) ;
Zhou, Zhongyin (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Zhang, Zhe (Zhejiang University. Department of Animal Science) ;
Chen, Zitao (Zhejiang University. Department of Animal Science) ;
Cui, Leilei (University College London. UCL Genetics Institute) ;
Xiang, Ruidong (Centre for AgriBiosciences) ;
Shen, Xia (University of Edinburgh. Centre for Global Health Research) ;
Li, Pinghua (Nanjing Agricultural University. Institute of Swine Science) ;
Huang, Ruihua (Nanjing Agricultural University. Institute of Swine Science) ;
Tang, Guoqing (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ;
Li, Mingzhou (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ;
Zhao, Yunxiang (Guangxi University. College of Animal Science and Technology) ;
Yi, Guoqiang (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Tang, Zhonglin (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Jiang, Jicai (North Carolina State University. Department of Animal Science) ;
Zhao, Fuping (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ;
Yuan, Xiaolong (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Liu, Xiaohong (Sun Yat-sen University. State Key Laboratory of Biocontrol) ;
Chen, Yaosheng (Sun Yat-sen University. State Key Laboratory of Biocontrol) ;
Xu, Xuewen (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ;
Zhao, Shuhong (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ;
Zhao, Pengju (Hainan Institute, Zhejiang University) ;
Haley, Chris (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Zhou, Huaijun (University of California. Department of Animal Science) ;
Wang, Qishan (Zhejiang University. Department of Animal Science) ;
Pan, Yuchun (Zhejiang University. Department of Animal Science) ;
Ding, Xiangdong (China Agricultural University. College of Animal Science and Technology) ;
Ma, Li (University of Maryland. Department of Animal and Avian Sciences) ;
Li, Jiaqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Navarro, Pau (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Zhang, Qin (Shandong Agricultural University. College of Animal Science and Technology) ;
Li, Bingjie (Scotland's Rural College. Roslin Institute Building) ;
Tenesa, Albert (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Li, Kui (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Liu, George E. (U.S. Department of Agriculture) ;
Zhang, Zhe (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Fang, Lingzhao (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer)
The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been established to develop a public resource of genetic regulatory variants in livestock, which is essential for linking genetic polymorphisms to variation in phenotypes, helping fundamental biological discovery and exploitation in animal breeding and human biomedicine. [...]
2024 -  10.1038/s41588-023-01585-7
Nature genetics, Vol. 56 (january 2024) , p. 112-123
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27 p, 1.6 MB |
Exploring the ovine sperm transcriptome by RNAseq techniques : I Effect of seasonal conditions on transcripts abundance
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Ureña, Irene (CSIC-INIA. Departamento de Mejora Genetica Animal) ;
Gonzalez, Carmen (CSIC-INIA. Departamento de Mejora Genetica Animal) ;
Ramon, Manuel (IRIAF-CERSYRA) ;
Gòdia, Marta (Centre de Recerca en Agrigenòmica) ;
Clop, Alex (Centre de Recerca en Agrigenòmica) ;
Calvo Lacosta, Jorge Hugo (Centro de Investigación y Tecnología Agroalimentaria de Aragón) ;
Carabaño, M. Jesús (CSIC-INIA. Departamento de Mejora Genetica Animal) ;
Serrano, Magdalena (CSIC-INIA. Departamento de Mejora Genetica Animal)
Understanding the cell molecular changes occurring as a results of climatic circumstances is crucial in the current days in which climate change and global warming are one of the most serious challenges that living organisms have to face. [...]
2022 - 10.1371/journal.pone.0264978
PloS one, Vol. 17, Num. 3 (March 2022) , art. e0264978
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17 p, 1.5 MB |
Assessing the levels of intraspecific admixture and interspecific hybridization in Iberian wild goats (Capra pyrenaica)
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Cardoso, Tainã Figueiredo (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Luigi Sierra, Maria Gracia (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Cabrera Pane, Betlem (Centre de Recerca en Agrigenòmica) ;
Noce, Antonia (Leibniz-Institute for Farm Animal Biology) ;
Mármol-Sánchez, Emilio (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
García-González, Ricardo (Instituto Pirenaico de Ecología) ;
Fernández-Arias, Alberto (Gobierno de Aragón) ;
Alabart, José Luis (Gobierno de Aragón) ;
López Olvera, Jorge R (Universitat Autònoma de Barcelona. Servei d'Ecopatologia de Fauna Salvatge) ;
Mentaberre García, Gregorio (Universitat de Lleida. Departament de Ciència Animal) ;
Granados Torres, José Enrique (Espacio Natural Sierra Nevada) ;
Cardells-Peris, Jesús (Universidad CEU Cardenal Herrera) ;
Molina, Antonio (Universidad de Córdoba) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Iberian wild goats (Capra pyrenaica, also known as Iberian ibex, Spanish ibex, and Spanish wild goat) underwent strong genetic bottlenecks during the 19 th and 20 th centuries due to overhunting and habitat destruction. [...]
2021 - 10.1111/eva.13299
Evolutionary applications, Vol. 14 (september 2021) , p. 2618-2634
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12 p, 714.2 KB |
Characterization of the Impact of Density Gradient Centrifugation on the Profile of the Pig Sperm Transcriptome by RNA-Seq
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Lian, Yu (Centre de Recerca en Agrigenòmica) ;
Gòdia, Marta (Centre de Recerca en Agrigenòmica) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Rodríguez Gil, Joan Enric (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Balasch, Sam (Grup Gepork S.A. (Barcelona)) ;
Sánchez Bonastre, Armando (Centre de Recerca en Agrigenòmica) ;
Clop, Alex (Centre de Recerca en Agrigenòmica)
RNA-Seq data from human semen suggests that the study of the sperm transcriptome requires the previous elimination from the ejaculates of somatic cells carrying a larger load of RNA. Semen purification is also carried to study the sperm transcriptome in other species including swine and it is often done by density gradient centrifugation to obtain viable spermatozoa from fresh ejaculates or artificial insemination doses, thereby limiting the throughput and remoteness of the samples that can be processed in one study. [...]
2021 - 10.3389/fvets.2021.668158
Frontiers in Veterinary Science, Vol. 8 (July 2021) , art. 668158
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17 p, 867.3 KB |
Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes
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Clop, Alex (Centre de Recerca en Agrigenòmica) ;
Sharaf, Abdoallah (Ain Shams University. Faculty of agriculture) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica) ;
Cirera, Susanna (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Mercadé Carceller, Anna (Centre de Recerca en Agrigenòmica) ;
Derdak, Sophia (Universitat Pompeu Fabra) ;
Beltran i Agulló, Sergi (Universitat Pompeu Fabra) ;
Huisman, Abe (Hypor BV (The Netherlands)) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
van As, Pieter (Hendrix Genetics Research & Technology Centre) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Taste receptors (TASRs) are essential for the body's recognition of chemical compounds. In the tongue, TASRs sense the sweet and umami and the toxin-related bitter taste thus promoting a particular eating behaviour. [...]
2016 - 10.1186/s12864-016-2972-z
BMC genomics, Vol. 17 (August 2016) , art. 685
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21 p, 2.5 MB |
A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine
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Gòdia, Marta (Centre de Recerca en Agrigenòmica) ;
Reverter, Antonio (Queensland Bioscience Precinct. CSIRO Agriculture and Food (Australia)) ;
González Prendes, Rayner (Wageningen University & Research. Animal Breeding and Genomics (The Netherlands)) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries. Departament de Genètica i Millora Animal) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Rodríguez Gil, Joan Enric (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Centre de Recerca en Agrigenòmica)
Background: Genetic pressure in animal breeding is sparking the interest of breeders for selecting elite boars with higher sperm quality to optimize ejaculate doses and fertility rates. However, the molecular basis of sperm quality is not yet fully understood. [...]
2020 - 10.1186/s12711-020-00592-0
Genetics, selection, evolution, Vol. 52 (December 2020) , art. 72
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35 p, 524.5 KB |
Characterisation of sperm piRNAs and their correlation with semen quality traits in swine
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Ablondi, Michela (University of Parma. Department of Veterinary Science (Italy)) ;
Gòdia, Marta (Centre de Recerca en Agrigenòmica) ;
Rodríguez Gil, Joan Enric (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Sánchez Bonastre, Armando (Centre de Recerca en Agrigenòmica) ;
Clop, Alex (Centre de Recerca en Agrigenòmica) ;
Universitat Autònoma de Barcelona.
Departament de Ciència Animal i dels Aliments
Piwi-interacting RNAs (piRNAs) are a class of non-coding RNAs that are essential in the transcriptional silencing of transposable elements and warrant genome stability in the mammalian germline. In this study, we have identified piRNAs in porcine sperm using male germline and zygote datasets from human, mice, cow and pig, and evaluated the relation between their abundances and sperm quality traits. [...]
2021 - 10.1111/age.13022
Animal Genetics, Vol. 52, Issue 1 (February 2021) , p. 114-120
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9 p, 319.1 KB |
Whole genome sequencing identifies allelic ratio distortion in sperm involving genes related to spermatogenesis in a swine model
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Gòdia, Marta (Centre de Recerca en Agrigenòmica) ;
Casellas Vidal, Joaquim (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Rodríguez Gil, Joan Enric (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Centre de Recerca en Agrigenòmica) ;
Universitat Autònoma de Barcelona.
Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia
Transmission Ratio Distortion (TRD), the uneven transmission of an allele from a parent to its offspring, can be caused by allelic differences affecting gametogenesis, fertilization or embryogenesis. [...]
2020 - 10.1093/dnares/dsaa019
DNA research, Vol. 27, Issue 5 (October 2020) , art. dsaa019
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