UAB Digital Repository of Documents 5 records found  Search took 0.01 seconds. 
1.
25 p, 981.4 KB Prunus genetics and applications after de novo genome sequencing : achievements and prospects / Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ; Decroocq, Véronique (Institut National de la Recherche Agronomique (França)) ; Dirlewanger, Elisabeth (Institut National de la Recherche Agronomique (França)) ; Eduardo, Iban (Centre de Recerca en Agrigenòmica) ; Gao, Zhong Shan (Zhejiang University. Allergy Research Center) ; Gasic, Ksenija (Clemson University) ; Iezzoni, Amy (Michigan State University. Department of Horticulture) ; Jung, Sook (Michigan State University. Department of Horticulture) ; Peace, Cameron (Washington State University. Department of Horticulture) ; Prieto, Humberto (Instituto de Investigaciones Agropecuarias. Centro Regional de Investigación La Platina (Chile)) ; Tao, Ryutaro (Kyoto University. Laboratory of Pomology) ; Verde, Ignazio (Centro di ricerca Olivicoltura. Frutticoltura e Agrumicoltura. Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ; Abbott, Albert G. (University of Kentucky) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
Prior to the availability of whole-genome sequences, our understanding of the structural and functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping of important traits and development of EST resources. [...]
2019 - 10.1038/s41438-019-0140-8
Horticulture research, Vol. 6 (April 2019) , art. 58  
2.
12 p, 2.0 MB Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers / Cabrera, Antonio (The Ohio State University. Department of Horticulture and Crop Science) ; Kozik, Alex (University of California. Genome Center and Department of Plant Sciences) ; Howad, Werner (Institut de Recerca i Tecnologia Agroalimentàries) ; Arús i Gorina, Pere (Institut de Recerca i Tecnologia Agroalimentàries) ; Iezzoni, Amy F.. (Michigan State University. Department of Horticulture) ; Van der Knaap, Esther (The Ohio State University. Department of Horticulture and Crop Science)
Background: Detailed comparative genome analyses within the economically important Rosaceae family have not been conducted. This is largely due to the lack of conserved gene-based molecular markers that are transferable among the important crop genera within the family [e. [...]
2009 - 10.1186/1471-2164-10-562
BMC genomics, Vol. 10 (November 2009) , art. 562  
3.
13 p, 1.2 MB Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm / Verde, Ignazio (Centro di Ricerca per la Frutticoltura (Roma)) ; Bassil, Nahla (United States Department of Agriculture. National Clonal Germplasm Repository) ; Scalabrin, Simone (Istituto di Genomica Applicata) ; Gilmore, Barbara (United States Department of Agriculture. National Clonal Germplasm Repository) ; Lawley, Cynthia T. (Illumina Inc. (California)) ; Gasic, Ksenija (Clemson University. School of Agricultural, Forest and Environmental Sciences) ; Micheletti, Diego (Centre de Recerca en Agrigenòmica) ; Rosyara, Umesh R. (Michigan State University. Department of Horticulture) ; Cattonaro, Federica (Istituto di Genomica Applicata) ; Vendramin, Elisa (Centro di Ricerca per la Frutticoltura (Roma)) ; Main, Dorrie (Washington State University. Department of Horticulture & Landscape Architecture) ; Aramini, Valeria (Centro di Ricerca per la Frutticoltura (Roma)) ; Blas, Andrea L. (Centre de Recerca en Agrigenòmica) ; Mockler, Todd C. (The Donald Danforth Plant Science Center) ; Bryant, Douglas W. (The Donald Danforth Plant Science Center) ; Wilhelm, Larry (Oregon Health Sciences University) ; Troggio, Michela (The Istituto Agrario di San Michele all'Adige) ; Sosinski, Bryon (North Carolina State University. Department of Horticultural Science) ; Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Iezzoni, Amy (Michigan State University. Department of Horticulture) ; Morgante, Michele (Istituto di Genomica Applicata) ; Peace, Cameron (Washington State University. Department of Horticulture & Landscape Architecture)
Although a large number of single nucleotide polymorphism (SNP) markers covering the entire genome are needed to enable molecular breeding efforts such as genome wide association studies, fine mapping, genomic selection and marker-assisted selection in peach [Prunus persica (L. [...]
The almost 7,000 SNPs verified as polymorphic through extensive empirical evaluation represent an excellent source of markers for future studies in genetic relatedness, genetic mapping, and dissecting the genetic architecture of complex agricultural traits. [...]

2012 - 10.1371/journal.pone.0035668
PloS one, Vol. 7, issue 4 (April 2012) , e35668  
4.
13 p, 1.3 MB Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family / Illa, Eudald (Centre de Recerca en Agrigenòmica) ; Sargent, Daniel J. (East Malling Research) ; López Girona, Elena (East Malling Research) ; Bushakra, Jill (The New Zealand Institute for Plant & Food Research Ltd) ; Cestaro, Alessandro (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Crowhurst, Ross (The New Zealand Institute for Plant & Food Research Ltd) ; Pindo, Massimo (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Cabrera, Antonio (The Ohio State University. Department of Horticulture and Crop Science) ; Van der Knaap, Esther (The Ohio State University. Department of Horticulture and Crop Science) ; Iezzoni, Amy (Michigan State University. Department of Horticulture) ; Gardiner, Susan (The New Zealand Institute for Plant & Food Research Ltd) ; Velasco, Riccardo (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Chagné, David (The New Zealand Institute for Plant & Food Research Ltd) ; Troggio, Michela (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige)
Background. comparative genome mapping studies in Rosaceae have been conducted until now by aligning genetic maps within the same genus, or closely related genera and using a limited number of common markers. [...]
2011 - 10.1186/1471-2148-11-9
BMC evolutionary biology, Vol. 11 (January 2011) , art. 9  
5.
30 p, 3.7 MB Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa / Bassil, Nahla (United States Department of Agriculture. National Clonal Germplasm Repository) ; Davis, Thomas M. (University of New Hampshire) ; Zhang, Hailong (University of New Hampshire) ; Ficklin, Stephen (Washington State University) ; Mittmann, Mike (Affymetrix) ; Webster, Teresa (Affymetrix) ; Mahoney, Lise (University of New Hampshire) ; Wood, David (University of New Hampshire) ; Alperin, Elisabeth S. (United States Department of Agriculture. National Clonal Germplasm Repository) ; Rosyara, Umesh R. (Michigan State University) ; Koehorst-vanc Putten, Herma (Wageningen UR. Plant Breeding) ; Monfort, Amparo (Centre de Recerca en Agrigenòmica) ; Sargent, Daniel J. (Fondazione Edmund Mach, Centro di Ricerca e Innovazione) ; Amaya, Iraida (Instituto de Investigación y Formación Agraria y Pesquera) ; Denoyes, Beatrice (Institut national de la recherche agronomique (França). Biologie du Fruit et Pathologie) ; Bianco, Luca (Fondazione Edmund Mach, Centro di Ricerca e Innovazione) ; Van Dijk, Thijs (Wageningen UR. Plant Breeding) ; Pirani, Ali (Affymetrix) ; Iezzoni, Amy (Michigan State University) ; Main, Dorrie (Washington State University) ; Peace, Cameron (Washington State University) ; Yang, Yilong (University of New Hampshire) ; Vance Whitaker, Vance (University of Florida) ; Verma, Sujeet · (University of Florida) ; Bellon, Laurent (Affymetrix) ; Brew, Fiona (Affymetrix) ; Herrera, Raul (Universidad de Talca. Instituto Ciencias Biologicas) ; Van de Weg, Eric (Wageningen UR. Plant Breeding)
Background: A high-throughput genotyping platform is needed to enable marker-assisted breeding in the allo-octoploid cultivated strawberry Fragaria × ananassa. Short-read sequences from one diploid and 19 octoploid accessions were aligned to the diploid Fragaria vesca 'Hawaii 4' reference genome to identify single nucleotide polymorphisms (SNPs) and indels for incorporation into a 90 K Affymetrix® Axiom® array. [...]
2015 - 10.1186/s12864-015-1310-1
BMC genomics, Vol. 16 (2015) art. 155  

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