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UAB Digital Repository of Documents 4 records found  Search took 0.01 seconds. 
1.
21 p, 1.4 MB A Deep Catalog of Autosomal Single Nucleotide Variation in the Pig / Bianco, Erica (Centre de Recerca en Agrigenòmica) ; Nevado, Bruno (Centre de Recerca en Agrigenòmica) ; Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica) ; Perez-Enciso, Miguel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
A comprehensive catalog of variability in a given species is useful for many important purposes, e. g. , designing high density arrays or pinpointing potential mutations of economic or physiological interest. [...]
2015 - 10.1371/journal.pone.0118867
PloS one, Vol. 10 Núm. 3 (2015)  
Detailed record - Creative Commons
2.
8 p, 426.0 KB SNP calling by sequencing pooled samples / Perez-Enciso, Miguel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Esteve-Codina, Anna (Centre de Recerca en Agrigenòmica) ; Ferretti, Luca (Centre de Recerca en Agrigenòmica) ; Raineri, Emanuele (Centre Nacional d'Anàlisi Genòmica) ; Nevado, Bruno (University of Oxford. Department of Plant Sciences) ; Heath, Simon (Centre Nacional d'Anàlisi Genòmica)
Performing high throughput sequencing on samples pooled from different individuals is a strategy to characterize genetic variability at a small fraction of the cost required for individual sequencing. [...]
2012 - 10.1186/1471-2105-13-239
BMC bioinformatics, Vol. 13 (2012)  
Detailed record - Creative Commons
3.
11 p, 1.1 MB Optimized next-generation sequencing genotype-haplotype calling for genome variability analysis / Navarro Fernández, Javier (Universitat Autònoma de Barcelona. Departament d'Arquitectura de Computadors i Sistemes Operatius) ; Nevado, Bruno (University of Oxford. Department of Plant Sciences) ; Hernández Budé, Porfidio (Universitat Autònoma de Barcelona. Departament d'Arquitectura de Computadors i Sistemes Operatius) ; Vera Rodríguez, Gonzalo (Centre de Recerca en Agrigenòmica) ; Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica)
The accurate estimation of nucleotide variability using next-generation sequencing data is challenged by the high number of sequencing errors produced by new sequencing technologies, especially for nonmodel species, where reference sequences may not be available and the read depth may be low due to limited budgets. [...]
2017 - 10.1177/1176934317723884
Evolutionary bioinformatics online, Vol. 13, (August 2017) , p. 1-11  
Detailed record - Creative Commons
4.
16 p, 659.0 KB Water-level fluctuations and metapopulation dynamics as drivers of genetic diversity in populations of three Tanganyikan cichlid fish species / Nevado, Bruno (Centre de Recerca en Agrigenòmica) ; Mautner, S. (Department of Zoology, Karl-Franzens-University Graz) ; Sturmbauer, C. (Department of Zoology, Karl-Franzens-University Graz) ; Verheyen, E. (Evolutionary Ecology Group, University of Antwerp) ; Universitat Autònoma de Barcelona
Understanding how genetic variation is generated and maintained in natural populations, and how this process unfolds in a changing environment, remains a central issue in biological research. In this work, we analysed patterns of genetic diversity from several populations of three cichlid species from Lake Tanganyika in parallel, using the mitochondrial DNA control region. [...]
2013 - 10.1111/mec.12374
Molecular ecology, Vol. 22 (july 2013) , p. 3933-3948  
Detailed record - Creative Commons

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