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8 p, 1.2 MB |
Single and longitudinal genome-wide association studies for dairy traits available in goats with three recorded lactations
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Martínez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Macri, Martina (Universidad de Córdoba. Departamento de Genética) ;
Delgado, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Fernández Alvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Milk yield and composition phenotypes are systematically recorded across several lactations in goats, but the majority of genome-wide association studies (GWAS) performed so far have rather ignored the longitudinal nature of such data. [...]
2024 -  10.1111/age.13391
Animal Genetics, Vol. 55, Núm. 2 (April 2024) , p. 257-264
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2.
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46 p, 1.5 MB |
Modeling microRNA-driven post-transcriptional regulation using exon-intron split analysis in pigs
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Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Cirera, Susanna (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Zingaretti, Laura M. (Universidad Nacional de Villa María) ;
Jacobsen, Mette Juul (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries) ;
Jørgensen, Claus B. (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Cardoso, Tainã Figueiredo (Institut de Recerca i Tecnologia Agroalimentàries) ;
Quintanilla, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
The contribution of microRNAs (miRNAs) to mRNA post-transcriptional regulation has often been explored by the post hoc selection of downregulated genes and determining whether they harbor binding sites for miRNAs of interest. [...]
2022 - 10.1111/age.13238
Animal Genetics, Vol. 53, Issue 5 (October 2022) , p. 613-626
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3.
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14 p, 663.5 KB |
Markers with low GenTrain scores can generate spurious signals in genome-wide scans for transmission ratio distortion
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Casellas Vidal, Joaquim (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Fernández Álvarez, Javier (Universidad de Córdoba. Departamento de Genética) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
Transmission ratio distortion (TRD) is the preferential transmission of one specific allele to offspring at the expense of the other. The existence of TRD is mostly explained by the segregation of genetic variants with deleterious effects on the developmental processes that go from the formation of gametes to fecundation and birth. [...]
2021 - 10.1111/age.13107
Animal Genetics, Vol. 52, Issue 5 (October 2021) , p. 779-781
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11 p, 1.0 MB |
Detecting the footprint of selection on the genomes of Murciano-Granadina goats
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Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Landi, Vincenzo (University of Bari "Aldo Moro") ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Fernández Álvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
Artificial selection is one of the major forces modifying the genetic composition of livestock populations. Identifying genes under selection could be useful to elucidate their impact on phenotypic variation. [...]
2021 - 10.1111/age.13113
Animal Genetics
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5.
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6.
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14 p, 1015.4 KB |
Discovering lethal alleles across the turkey genome using a transmission ratio distortion approach
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Abdalla, E. A. (University of Guelph) ;
Id-Lahoucine, Samir (University of Guelph) ;
Cánovas, Angela (University of Guelph) ;
Casellas Vidal, Joaquim (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Schenkel, Flavio S (University of Guelph) ;
Wood, B. J. (University of Queensland) ;
Baes, Christine F (University of Bern)
Deviation from Mendelian inheritance expectations (transmission ratio distortion, TRD) has been observed in several species, including the mouse and humans. In this study, TRD was characterized in the turkey genome using both allelic (specific- and unspecific-parent TRD) and genotypic (additive- and dominance-TRD) parameterizations within a Bayesian framework. [...]
2020 - 10.1111/age.13003
Animal Genetics, Vol. 51 (october 2020) , p. 876-889
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12 p, 878.0 KB |
Genome-wide association study for feed efficiency in collective cage-raised rabbits under full and restricted feeding
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Sánchez, Juan Pablo (Institut de Recerca i Tecnologia Agroalimentàries) ;
Legarra, Andres (National Institute for Agronomic Research) ;
Velasco-Galilea, M. (Institut de Recerca i Tecnologia Agroalimentàries) ;
Piles, M. (Institut de Recerca i Tecnologia Agroalimentàries) ;
Sánchez Bonastre, Armando (Centre de Recerca en Agrigenòmica) ;
Rafel Guarro, Oriol (Institut de Recerca i Tecnologia Agroalimentàries) ;
González-Rodríguez, Olga (Institut de Recerca i Tecnologia Agroalimentàries) ;
Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries)
Feed efficiency (FE) is one of the most economically and environmentally relevant traits in the animal production sector. The objective of this study was to gain knowledge about the genetic control of FE in rabbits. [...]
2020 - 10.1111/age.12988
Animal Genetics, Vol. 51, Issue 5 (October 2020) , p. 799-810
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35 p, 524.5 KB |
Characterisation of sperm piRNAs and their correlation with semen quality traits in swine
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Ablondi, Michela (University of Parma. Department of Veterinary Science (Italy)) ;
Gòdia, Marta (Centre de Recerca en Agrigenòmica) ;
Rodríguez Gil, Joan Enric (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Sánchez Bonastre, Armando (Centre de Recerca en Agrigenòmica) ;
Clop, Alex (Centre de Recerca en Agrigenòmica) ;
Universitat Autònoma de Barcelona.
Departament de Ciència Animal i dels Aliments
Piwi-interacting RNAs (piRNAs) are a class of non-coding RNAs that are essential in the transcriptional silencing of transposable elements and warrant genome stability in the mammalian germline. In this study, we have identified piRNAs in porcine sperm using male germline and zygote datasets from human, mice, cow and pig, and evaluated the relation between their abundances and sperm quality traits. [...]
2021 - 10.1111/age.13022
Animal Genetics, Vol. 52, Issue 1 (February 2021) , p. 114-120
3 documents
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11 p, 594.5 KB |
Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows
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Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries) ;
Zingaretti, Laura M. (Centre de Recerca en Agrigenòmica) ;
Popova, Milka (Université Clermont Auvergne. Institut National de la Recherche Agronomique. VetAgro Sup (France)) ;
Estellé, Jordi (Université Paris-Saclay. Institut National de la Recherche Agronomique. Génétique Animale et Biologie Intégrative (France)) ;
Bernard, Aurelien (Université Clermont Auvergne. Institut National de la Recherche Agronomique. VetAgro Sup (France)) ;
Pons, Nicolas (Institut National de la Recherche Agronomique. Metagenopolis Unit (France)) ;
Bellot, Pau (Centre de Recerca en Agrigenòmica) ;
Mach Casellas, Núria (Université Paris-Saclay. Institut National de la Recherche Agronomique. AgroParisTech (France)) ;
Rau, Andrea (Université Paris-Saclay. Institut National de la Recherche Agronomique. AgroParisTech (France)) ;
Roume, Hugo (Institut National de la Recherche Agronomique. Metagenopolis Unit (France)) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Faverdin, Philippe (Institut National de la Recherche Agronomique (França)) ;
Edouard, Nadège (Institut National de la Recherche Agronomique (França)) ;
Ehrlich, Dusko (Institut National de la Recherche Agronomique. Metagenopolis Unit (France)) ;
Morgavi, Diego P. (Université Clermont Auvergne. Institut National de la Recherche Agronomique (France)) ;
Renand, Gilles (Université Paris-Saclay. Institut National de la Recherche Agronomique. AgroParisTech (France))
Mitigation of greenhouse gas emissions is relevant for reducing the environmental impact of ruminant production. In this study, the rumen microbiome from Holstein cows was characterized through a combination of 16S rRNA gene and shotgun metagenomic sequencing. [...]
2020 - 10.1111/jbg.12427
Journal of Animal Breeding and Genetics, Vol. 137, Issue 1 (January 2020) , p. 49-59
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