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20 p, 2.4 MB |
Ghost admixture in eastern gorillas
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Pawar, Harvinder (Institute of Evolutionary Biology) ;
Rymbekova, Aigerim (University of Vienna. Department of Evolutionary Anthropology) ;
Cuadros-Espinoza, Sebastian (Institute of Evolutionary Biology) ;
Huang, Xin (University of Vienna. Department of Evolutionary Anthropology) ;
de Manuel, Marc (Institute of Evolutionary Biology) ;
van der Valk, Tom (Swedish Museum of Natural History) ;
Lobón, Irene (Institute of Evolutionary Biology) ;
Alvarez-Estape, Marina (Institute of Evolutionary Biology) ;
Haber, Marc (University of Birmingham. Institute of Cancer and Genomic Sciences) ;
Dolgova, Olga (Parque Científico Tecnológico de Bizkaia. Centro de Investigación Cooperativa en Biociencias) ;
Han, Sojung 1984- (Institute of Evolutionary Biology) ;
Esteller-Cucala, Paula (Institute of Evolutionary Biology) ;
Juan, David (Institute of Evolutionary Biology) ;
Ayub, Qasim (Monash University Malaysia) ;
Bautista, Ruben (Wellcome Trust Sanger Institute (Regne Unit)) ;
Kelley, Joanna (University of California. Department of Ecology and Evolutionary Biology) ;
Cornejo, Omar E. (University of California. Department of Ecology and Evolutionary Biology) ;
Lao, Oscar (Institute of Evolutionary Biology) ;
Andrés, Aida M. (University College London. Department of Genetics, Evolution and Environment) ;
Guschanski, Katerina (University of Edinburgh) ;
Ssebide, Benard (Gorilla Doctors) ;
Cranfield, Mike (University of California Davis) ;
Tyler-Smith, Chris (Wellcome Trust Sanger Institute (Regne Unit)) ;
Xue, Yali (Wellcome Trust Sanger Institute (Regne Unit)) ;
Prado-Martinez, Javier (Institute of Evolutionary Biology) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Kuhlwilm, Martin (Institute of Evolutionary Biology)
Archaic admixture has had a substantial impact on human evolution with multiple events across different clades, including from extinct hominins such as Neanderthals and Denisovans into modern humans. [...]
2023 -  10.1038/s41559-023-02145-2
Nature ecology & evolution, Vol. 7 (July 2023) , p. 1503-1514
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8 p, 990.0 KB |
The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild
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Prado-Martinez, Javier (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Hernando Herraez, Irene (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Lorente-Galdos, Belen (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Dabad, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Ramírez, Óscar (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Baeza Delgado, Carlos (Universitat de València. Departament de Bioquímica i Biologia Molecular) ;
Morcillo-Suarez, Carlos (Universitat Pompeu Fabra. Instituto Nacional de Bioinformatica) ;
Alkan, Can (Bilkent University. Department of Computer Engineering) ;
Hormozdiari, Fereydoun (University of Washington. Department of Genome Sciences) ;
Raineri, Emanuele (Centre Nacional d'Anàlisi Genòmica) ;
Estellé, Jordi (Centre Nacional d'Anàlisi Genòmica) ;
Fernández, Marcos (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Valles, Mònica (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Ritscher, Lars (University of Leipzig. Institute of Biochemistry) ;
Schöneberg, Torsten (University of Leipzig. Institute of Biochemistry) ;
De la Calle-Mustienes, Elisa (Centro Andaluz de Biología del Desarrollo) ;
Casillas Viladerrams, Sònia (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Rubio Acero, Raquel (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Melé, M. (Universitat Pompeu Fabra. Centre de Regulació Genòmica (CRG-UPF)) ;
Engelken, Johannes (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Cáceres Aguilar, Mario (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Gomez-Skarmeta, José Luis (Centro Andaluz de Biología del Desarrollo) ;
Gut, Marta (Centre Nacional d'Anàlisi Genòmica) ;
Bertranpetit, Jaume (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Gut, Ivo (Centre Nacional d'Anàlisi Genòmica) ;
Abello, Teresa (Zoo de Barcelona) ;
Eichler, Evan E. (Howard Hugues Medical Institute) ;
Mingarro, Ismael (Universitat de València. Departament de Bioquímica i Biologia Molecular) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Navarro, Arcadi, 1969- (Institució Catalana de Recerca i Estudis Avançats) ;
Marques-Bonet, Tomas 1975- (Institució Catalana de Recerca i Estudis Avançats)
Background: the only known albino gorilla, named Snowflake, was a male wild born individual from Equatorial Guinea who lived at the Barcelona Zoo for almost 40 years. He was diagnosed with non-syndromic oculocutaneous albinism, i. [...]
2013 - 10.1186/1471-2164-14-363
BMC genomics, Vol. 14 (2013) , art. 363
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5 p, 788.2 KB |
Great ape genetic diversity and population history
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Prado-Martinez, Javier (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Sudmant, Peter H. (Department of Genome Sciences. University of Washington) ;
Kidd, Jeffrey (Department of Genetics. Stanford University) ;
Li, Heng (Department of Genetics. Harvard Medical School, Boston) ;
Kelley, Joanna (Department of Genetics. Stanford University) ;
Lorente-Galdos, Belen (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Veeramah, Krishna (Arizona Research Laboratories. Division of Biotechnology. University of Arizona) ;
Woerner, August (Arizona Research Laboratories. Division of Biotechnology. University of Arizona) ;
O'Connor, Timothy (Department of Genome Sciences. University of Washington) ;
Santpere, Gabriel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Cagan, Alexander (Max Planck Institute for Evolutionary Anthropology. Department of Evolutionary Genetics) ;
Theunert, Christoph (Max Planck Institute for Evolutionary Anthropology. Department of Evolutionary Genetics) ;
Casals, Ferran (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Laayouni, Hafid (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Munch Terkelsen, Kasper (Aarhus University. Bioinformatics Research Centre) ;
Hobolth, Asger (Aarhus University. Bioinformatics Research Centre) ;
Halager, Anders E. (Aarhus University. Bioinformatics Research Centre) ;
Malig, Maika (Department of Genome Sciences. University of Washington) ;
Hernandez-Rodriguez, Jessica (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Hernando-Herraez, Irene (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Prüfer, Kay (Max Planck Institute for Evolutionary Anthropology. Department of Evolutionary Genetics) ;
Pybus, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Johnstone, Laurel (Arizona Research Laboratories. Division of Biotechnology. University of Arizona) ;
Lachmann, Michael (Max Planck Institute for Evolutionary Anthropology. Department of Evolutionary Genetics) ;
Alkan, Can (Bilkent University. Faculty of Engineering) ;
Twigg, Dorina (Department of Human Genetics. University of Michigan) ;
Petit Marty, Natalia (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Baker, Carl (Department of Genome Sciences. University of Washington) ;
Hormozdiari, Fereydoun (University of Washington. Department of Genome Sciences) ;
Fernández, Marcos (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Dabad, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Wilson, Michael L. (Department of Anthropology. University of Minnesota) ;
Stevison, Laurie (Institute for Human Genetics. University of California San Francisco) ;
Camprubí Sánchez, Cristina (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia) ;
Carvalho, Tiago (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Vives, Laura T. (Department of Genome Sciences. University of Washington) ;
Mele, Marta (Centre de Regulació Genòmica) ;
Abelló, María Teresa. (Zoo de Barcelona) ;
Kondova, Ivanela (Biomedical Primate Research Centre) ;
Bontrop, Ronald (Biomedical Primate Research Centre) ;
Pusey, Anne E (Duke University. Department of Evolutionary Anthropology) ;
Lankester, Felix (Washington State University. Paul G. Allen School for Global Animal Health) ;
Kiyang, John A. (Limbe Wildlife Centre) ;
Bergl, Richard A. (North Carolina Zoological Park) ;
Lonsdorf, E. (Franklin and Marshall College. Department of Psychology) ;
Myers, S. (Oxford University. Department of Statistics) ;
Ventura, M. (University of Bari. Department of Genetics and Microbiology) ;
Gagneux, Pascal (University of California San Diego. Department of Cellular and Molecular Medicine) ;
Comas, D. (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Siegismund, H. (University of Copenhagen Department of Biology, Bioinformatics) ;
Blanc, Julie (Centro Nacional de Análisis Genómico (CNAG). PCB) ;
Agueda Calpena, Lidia (Centro Nacional de Análisis Genómico (CNAG). PCB) ;
Gut, Marta (Centro Nacional de Análisis Genómico (CNAG). PCB) ;
Fulton, L. A (Washington University School of Medicine. Genome Sequencing Center) ;
Tishkoff, S. A. (University of Pennsylvania. Department of Biology and Genetics) ;
Mullikin, J. C. (National Institutes of Health Intramural Sequencing Center (Bethesda, Estats Units d'Amèrica)) ;
Wilson, R. K. (Washington University School of Medicine. Genome Sequencing Center) ;
Gut, I. G. (Centro Nacional de Análisis Genómico (CNAG). PCB) ;
Gonder, M. K. (University at Albany) ;
Ryder, O. A. (Genetics Division. San Diego Zoo's Institute for Conservation Research) ;
Hahn, B. H. (University of Pennsylvania. Departments of Medicine and Microbiology) ;
Navarro, Arcadi, 1969- (Institució Catalana de Recerca i Estudis Avançats) ;
Akey, J. M. (University of Washington. Department of Genome Sciences) ;
Bertranpetit, Jaume (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Reich, D. (Harvard Medical School. Department of Genetics) ;
Mailund, Thomas (Aarhus University. Bioinformatics Research Centre) ;
Schierup, Mikkel Heide (Aarhus University. Department of Bioscience) ;
Hvilsom, Christina (Copenhagen Zoo) ;
Andrés, A. M. (Max Planck Institute for Evolutionary Anthropology. Department of Evolutionary Genetics) ;
Wall, J. D. (University of California San Francisco. Institute for Human Genetics) ;
Bustamante, Carlos D (Stanford University. Department of Genetics) ;
Hammer, M. F. (University of Arizona. Arizona Research Laboratories. Division of Biotechnology) ;
Eichler, Evan E (Howard Hughes Medical Institute) ;
Marques-Bonet, Tomas 1975- (Institució Catalana de Recerca i Estudis Avançats)
Most great ape genetic variation remains uncharacterized; however, its study is critical for understanding population history, recombination, selection and susceptibility to disease. Here we sequence to high coverage a total of 79 wild- and captive-born individuals representing all six great ape species and seven subspecies and report 88. [...]
2013 - 10.1038/nature12228
Nature, Vol. 499, issue 7459 (July 2013) , p. 471-475
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13 p, 561.5 KB |
Gene fusions derived by transcriptional readthrough are driven by segmental duplication in human
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McCartney, Ann M. (Dublin City University. Bioinformatics and Molecular Evolution Group) ;
Hyland, Edel M. (Queens University Belfast. Institute for Global Food Security) ;
Cormican, Paul (Animal and Grassland Research and Innovation Centre (Irlanda)) ;
Moran, Raymond J. (Dublin City University. Bioinformatics and Molecular Evolution Group) ;
Webb, Andrew E. (Dublin City University. Bioinformatics and Molecular Evolution Group) ;
Lee, Kate D. (Massey University (New Zealand)) ;
Hernandez Rodriguez, Jessica (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Prado-Martinez, Javier (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Creevey, Christopher J. (Aberystwyth University. Institute of Biological, Environmental and Rural Sciences) ;
Aspden, Julie L. (University of Leeds. School of Molecular and Cellular Biology) ;
McInerney, James O. (University of Nottingham. School of Life Sciences) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
O'Connell, Mary J. (University of Nottingham. School of Life Sciences)
Gene fusion occurs when two or more individual genes with independent open reading frames becoming juxtaposed under the same open reading frame creating a new fused gene. A small number of gene fusions described in detail have been associated with novel functions, for example, the hominid-specific PIPSL gene, TNFSF12, and the TWE-PRIL gene family. [...]
2019 - 10.1093/gbe/evz163
Genome biology and evolution, Vol. 11, Issue 9 (September 2019) , p. 2678-2690
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