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UAB Digital Repository of Documents 2 records found  Search took 0.01 seconds. 
1.
17 p, 3.1 MB The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer / Armaos, Alexandros (Istituto Italiano di Tecnologia) ; Serra, François (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Núñez-Carpintero, Iker (Barcelona Supercomputing Center) ; Seo, J.H.Ji-Heui (Department of Medical Oncology, Dana Farber Cancer Institute (Estats Units d'Amèrica)) ; Baca, Sylvan C. (Department of Medical Oncology, Dana Farber Cancer Institute (Estats Units d'Amèrica)) ; Gustincich, Stefano (Istituto Italiano di Tecnologia) ; Valencia, Alfonso (Institució Catalana de Recerca i Estudis Avançats) ; Freedman, Matthew L. (Broad Institute (Estats Units d'Amèrica)) ; Cirillo, D. (Barcelona Supercomputing Center) ; Giambartolomei, C. (Human Technopol (Itàlia)) ; Tartaglia, G.G. (Istituto Italiano di Tecnologia (Itàlia))
We introduce Promoter-Enhancer-Guided Interaction Networks (PENGUIN), a method for studying protein-protein interaction (PPI) networks within enhancer-promoter interactions. PENGUIN integrates H3K27ac-HiChIP data with tissue-specific PPIs to define enhancer-promoter PPI networks (EPINs). [...]
2023 - 10.1038/s41467-023-43767-1
Nature communications, Vol. 14 Núm. 1 (december 2023) , p. 8084  
Detailed record - Creative Commons
2.
16 p, 3.4 MB Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution / Tomás Daza, Laureano (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Rovirosa, Llorenç (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; López-Martí, Paula (Barcelona Supercomputing Center) ; Nieto-Aliseda, Andrea (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Serra, François (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Planas-Riverola, Ainhoa (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Molina, Oscar (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; McDonald, Rebecca (Wellcome-MRC Cambridge Stem Cell Institute) ; Ghevaert, Cedric (NHS Blood and Transplant) ; Cuatrecasas, Esther (Hospital Sant Joan de Déu (Manresa)) ; Costa, Dolors (Cancer Network Biomedical Research Center) ; Camós, Mireia (Instituto de Salud Carlos III) ; Bueno, Clara (Institut Germans Trias i Pujol. Institut de Recerca contra la Leucèmia Josep Carreras) ; Menéndez, Pablo (Institució Catalana de Recerca i Estudis Avançats) ; Valencia, Alonso (Institució Catalana de Recerca i Estudis Avançats) ; Javierre, B. M (Institut Germans Trias i Pujol)
Long-range interactions between regulatory elements and promoters are key in gene transcriptional control; however, their study requires large amounts of starting material, which is not compatible with clinical scenarios nor the study of rare cell populations. [...]
2023 - 10.1038/s41467-023-35911-8
Nature communications, Vol. 14 Núm. 1 (december 2023) , p. 268  
Detailed record - Creative Commons

See also: similar author names
6 Serra, F.
1 Serra, F.C.
1 Serra, Federico
3 Serra, Francesc
1 Serra, Francesc,
2 Serra, Francisco
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