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Role of mycorrhizas and root exudates in plant uptake of soil nutrients (calcium, iron, magnesium, and potassium): has the puzzle been completely solved?
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Sardans i Galobart, Jordi (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Lambers, Hans (University of Western Australia. School of Biological Sciences) ;
Preece, Catherine (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Alrefaei, Abdulwahed Fahad (King Saud University. Department of Zoology) ;
Peñuelas, Josep (Centre de Recerca Ecològica i d'Aplicacions Forestals)
Anthropogenic global change is driving an increase in the frequency and intensity of drought and flood events, along with associated imbalances and limitation of several soil nutrients. In the context of an increasing human population, these impacts represent a global-scale challenge for biodiversity conservation and sustainable crop production to ensure food security. [...]
2023 -  10.1111/tpj.16184
The Plant journal, Vol. 114, issue 6 (June 2023) , art. 1227-1242
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2.
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18 p, 2.3 MB |
Phosphate-induced resistance to pathogen infection in Arabidopsis
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Val-Torregrosa, Beatriz (Centre de Recerca en Agrigenòmica) ;
Bundó Barberà, Mireia (Centre de Recerca en Agrigenòmica) ;
Martín-Cardoso, Héctor (Centre de Recerca en Agrigenòmica) ;
Bach-Pages, Marcel (Centre de Recerca en Agrigenòmica) ;
Chiou, Tzyy-Jen (Academia Sinica. Agricultural Biotechnology Research Center) ;
Flors, Victor (Univesitat Jaume I. Departament de Ciències Agràries i del Medi Natural) ;
San Segundo, Blanca (Centre de Recerca en Agrigenòmica)
In nature, plants are concurrently exposed to a number of abiotic and biotic stresses. Our understanding of convergence points between responses to combined biotic/abiotic stress pathways remains, however, rudimentary. [...]
2022 - 10.1111/tpj.15680
The Plant journal, Vol. 110, Issue 2 (April 2022) , p. 452-469
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3.
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21 p, 1.3 MB |
A genome-wide association study identifies novel players in Na and Fe homeostasis in Arabidopsis thaliana under alkaline-salinity stress
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Almira, Maria Jose (Universitat Autònoma de Barcelona. Laboratori de Fisiologia Vegetal) ;
Pérez-Martín, Laura (Universitat Autònoma de Barcelona. Laboratori de Fisiologia Vegetal) ;
Busoms, Silvia (Universitat Autònoma de Barcelona. Laboratori de Fisiologia Vegetal) ;
Boesten, René (Wageningen University and Research. Laboratory of Genetics) ;
Llugany i Ollé, Mercè (Universitat Autònoma de Barcelona. Laboratori de Fisiologia Vegetal) ;
Aarts, G. Mark (Wageningen University and Research. Laboratory of Genetics) ;
Poschenrieder, Charlotte (Universitat Autònoma de Barcelona. Laboratori de Fisiologia Vegetal)
In nature, multiple stress factors occur simultaneously. The screening of natural diversity panels and subsequent Genome-Wide Association Studies (GWAS) is a powerful approach to identify genetic components of various stress responses. [...]
2023 - 10.1111/tpj.16042
The Plant journal, Vol. 113, Issue 2 (January 2023) , p. 225-245
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4.
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46 p, 19.9 MB |
Amplification dynamics of miniature inverted-repeat transposable elements and their impact on rice trait variability
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Castanera, Raúl (Centre de Recerca en Agrigenòmica) ;
Vendrell-Mir, Pol (Centre de Recerca en Agrigenòmica) ;
Bardil, Amélie (Centre de Recerca en Agrigenòmica) ;
Carpentier, Marie-Christine (Université de Perpignan. Laboratoire Génome et Développement des Plantes) ;
Panaud, Olivier (Université de Perpignan. Laboratoire Génome et Développement des Plantes) ;
Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica)
Transposable elements (TEs) are a rich source of genetic variability. Among TEs, miniature inverted-repeat TEs (MITEs) are of particular interest as they are present in high copy numbers in plant genomes and are closely associated with genes. [...]
2021 - 10.1111/tpj.15277
The Plant journal, Vol. 107, Issue 1 (July 2021) , p. 118-135
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5.
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36 p, 17.2 MB |
The floral repressors TEMPRANILLO1 and 2 modulate salt tolerance by regulating hormonal components and photo-protection in Arabidopsis
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Osnato, Michela (Centre de Recerca en Agrigenòmica) ;
Cereijo, Unai (Centre de Recerca en Agrigenòmica) ;
Sala, Jan (Centre de Recerca en Agrigenòmica) ;
Matías Hernández, Luis (Centre de Recerca en Agrigenòmica) ;
Aguilar Jaramillo, Andrea Elizabeth (Centre de Recerca en Agrigenòmica) ;
Rodríguez-Goberna, María Rosa (Centre de Recerca en Agrigenòmica) ;
Riechmann, José Luis (Centre de Recerca en Agrigenòmica) ;
Rodríguez Concepción, Manuel (Centre de Recerca en Agrigenòmica) ;
Pelaz, Soraya (Centre de Recerca en Agrigenòmica)
Members of the plant specific RAV family of transcription factors regulate several developmental and physiological processes. In the model plant Arabidopsis thaliana, the RAV TEMPRANILLO 1 (TEM1) and TEM2 control important phase changes such as the juvenile to adult and the vegetative to reproductive transitions. [...]
2021 - 10.1111/tpj.15048
The Plant journal, Vol. 105, Issue 1 (January 2021) , p. 7-21
7 documents
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6.
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34 p, 6.1 MB |
TEMPRANILLO is a direct repressor of the microRNA miR172
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Aguilar Jaramillo, Andrea Elizabeth (Centre de Recerca en Agrigenòmica) ;
Marín González, Esther (Centre de Recerca en Agrigenòmica) ;
Matías Hernández, Luis (Centre de Recerca en Agrigenòmica) ;
Osnato, Michela (Centre de Recerca en Agrigenòmica) ;
Pelaz, Soraya (Centre de Recerca en Agrigenòmica) ;
Suárez-López, Paula (Centre de Recerca en Agrigenòmica)
In the age-dependent pathway, microRNA 156 (miR156) is essential for the correct timing of developmental transitions. miR156 negatively regulates several SPL genes, which promote the juvenile-to-adult and floral transitions in part through upregulation of miR172. [...]
2019 - 10.1111/tpj.14455
The Plant journal, Vol. 100, Issue 3 (November 2019) , p. 522-535
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7.
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50 p, 962.3 KB |
Transposons played a major role in the diversification between the closely related almond and peach genomes : Results from the almond genome sequence
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Alioto, Tyler Scott (Centre de Regulació Genòmica) ;
Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ;
Bardil, Amélie (Centre de Recerca en Agrigenòmica) ;
Barteri, Fabio (Centre de Recerca en Agrigenòmica) ;
Castanera, Raúl (Centre de Recerca en Agrigenòmica) ;
Cruz, Fernando (Centre de Regulació Genòmica) ;
Dhingra, Amit (Washington State University. Department of Horticulture) ;
Duval, Henri (Institut National de la Recherche Agronomique (França)) ;
Fernández i Martí, Angel (University of California) ;
Frias, Leonor (Centre de Regulació Genòmica) ;
Galán, Beatriz (Consejo Superior de Investigaciones Científicas) ;
García, José Luis (Consejo Superior de Investigaciones Científicas) ;
Howad, Werner (Centre de Recerca en Agrigenòmica) ;
Gómez-Garrido, Jessica (Centre de Regulació Genòmica) ;
Gut, Marta (Centre de Regulació Genòmica) ;
Julca, Irene (Centre de Regulació Genòmica) ;
Morata, Jordi (Centre de Recerca en Agrigenòmica) ;
Puigdomènech, Pere, 1948- (Centre de Recerca en Agrigenòmica) ;
Ribeca, Paolo (Centre de Regulació Genòmica) ;
Rubio Cabetas, María José (Centro de Investigación y Tecnología Agroalimentaria de Aragón) ;
Vlasova, Anna (Centre de Regulació Genòmica) ;
Wirthensohn, Michelle (The University of Adelaide. School of Agriculture, Food and Wine) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Gabaldón, Toni (Centre de Regulació Genòmica) ;
Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
We sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas combining short and long-read sequencing. We obtained a genome assembly totaling 227. 6 Mb of the estimated 238 Mb almond genome size, of which 91% is anchored to eight pseudomolecules corresponding to its haploid chromosome complement, and annotated 27,969 protein-coding genes and 6,747 non-coding transcripts. [...]
2020 - 10.1111/tpj.14538
The Plant journal, Vol. 101, Issue 2 (January 2020) , p. 455-472
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12 p, 932.7 KB |
MyROOT : a method and software for the semiautomatic measurement of primary root length in Arabidopsis seedlings
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Betegón Putze, Isabel (Centre de Recerca en Agrigenòmica) ;
González, Alejandro (Universitat Ramon Llull) ;
Sevillano, Xavier (Universitat Ramon Llull) ;
Blasco Escámez, David (Centre de Recerca en Agrigenòmica) ;
Caño Delgado, Ana I. (Centre de Recerca en Agrigenòmica)
Root analysis is essential for both academic and agricultural research. Despite the great advances in root phenotyping and imaging, calculating root length is still performed manually and involves considerable amounts of labor and time. [...]
2019 - 10.1111/tpj.14297
The Plant journal, Vol. 98, Issue 6 (June 2019) , p. 1145-1156
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60 p, 1.6 MB |
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution
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Lang, Daniel (Helmholtz Center Munich. Plant Genome and Systems Biology) ;
Ullrich, Kristian K. (University of Marburg. Faculty of Biology) ;
Murat, Florent (Institut national de la recherche agronomique. UMR 1095 Genetics. Diversity and Ecophysiology of Cereals) ;
Fuchs, Jorg (Leibniz Institute of Plant Genetics and Crop Plant Research) ;
Jenkins, Jerry (HudsonAlpha Institute for Biotechnology) ;
Haas, Fabian B. (University of Marburg. Faculty of Biology) ;
Piednoel, M. (Max Planck Institute for Plant Breeding Research) ;
Gundlach, H. (Helmholtz Center Munich. Plant Genome and Systems Biology) ;
Van Bel, M. (VIB-UGent Center for Plant Systems Biology) ;
Meyberg, R. (University of Marburg. Faculty of Biology) ;
Vives, Cristina (Centre de Recerca en Agrigenòmica) ;
Morata, Jordi (Centre de Recerca en Agrigenòmica) ;
Symeonidi, Aikaterini (University of Marburg. Faculty of Biology) ;
Hiss, Manuel (University of Marburg. Faculty of Biology) ;
Muchero, Wellington (Oak Ridge National Laboratory. Biosciences Division) ;
Kamisugi, Yasuko (University of Leeds. Centre for Plant Sciences) ;
Saleh, Omar (University of Freiburg. Faculty of Biology) ;
Blanc, Guillaume (Aix-Marseille Université. Structural and Genomic Information Laboratory) ;
Decker, Eva L. (University of Freiburg. Faculty of Biology) ;
van Gessel, Nico (University of Freiburg. Faculty of Biology) ;
Grimwood, Jane (HudsonAlpha Institute for Biotechnology) ;
Hayes, Richard D. (DOE Joint Genome Institute) ;
Graham, Sean W. (University of British Columbia. Department of Botany) ;
Gunter, Lee E. (Oak Ridge National Laboratory. Biosciences Division) ;
McDaniel, Stuart F. (University of Florida. Department of Biology) ;
Hoernstein, Sebastian N. W. (University of Freiburg. Faculty of Biology) ;
Larsson, Anders (Uppsala University. Evolutionary Biology Centre) ;
Li, Fay-Wei (Boyce Thompson Institute) ;
Perroud, Pierre-François (University of Marburg. Faculty of Biology) ;
Phillips, Jeremy (DOE Joint Genome Institute) ;
Ranjan, Priya (Oak Ridge National Laboratory) ;
Rokshar, Daniel S. (DOE Joint Genome Institute) ;
Rothfels, Carl J. (University of California. Department of Integrative Biology) ;
Schneider, Lucas (University of Marburg. Faculty of Biology) ;
Shu, Shengqiang (DOE Joint Genome Institute) ;
Stevenson, Dennis W. (New York Botanical Garden) ;
Thümmler, Fritz (Vertis Biotechnologie AG) ;
Tillich, Michael (Max Planck Institute of Molecular Plant Physiology) ;
Villarreal Aguilar, Juan C. (Université Laval. Department of Biology) ;
Widiez, Thomas (University of Geneva. Department of Plant Biology) ;
Wong, Gane Ka-Shu (University of Alberta. Department of Biological Sciences) ;
Wymore, Ann (Oak Ridge National Laboratory) ;
Zhang, Yong (Shenzhen Huahan Gene Life Technology Co. Ltd) ;
Zimmer, Aandreas D. (University of Freiburg. Faculty of Biology) ;
Quatrano, Ralph S. (Washington University. Department of Biology) ;
Mayer, Klaus F. X. (Technical University Munich) ;
Goodstein, David (DOE Joint Genome Institute) ;
Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica) ;
Vandepoele, Klaas (Ghent University. Department of Plant Biotechnology and Bioinformatics) ;
Reski, Ralph (University of Freiburg. Faculty of Biology) ;
Cuming, Andrew C. (University of Leeds. Faculty of Biological Sciences) ;
Tuskan, Gerald A. (Oak Ridge National Laboratory. Biosciences Division) ;
Maumus, Florian (Institut National de la Recherche Agronomique (França)) ;
Salse, Jerome (Institut national de la recherche agronomique. UMR 1095 Genetics. Diversity and Ecophysiology of Cereals) ;
Schmutz, Jeremy (DOE Joint Genome Institute) ;
Rensing, Stefan A. (University of Freiburg. BIOSS Centre for Biological Signalling Studies)
The draft genome of the moss model, Physcomitrella patens, comprised approximately 2000 unordered scaffolds. In order to enable analyses of genome structure and evolution we generated a chromosome-scale genome assembly using genetic linkage as well as (end) sequencing of long DNA fragments. [...]
2018 - 10.1111/tpj.13801
The Plant journal, Vol. 93, issue 3 (Feb. 2018) , p. 515-533
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66 p, 4.7 MB |
ETHQV6.3 is involved in melon climacteric fruit ripening and is encoded by a NAC domain transcription factor
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Ríos Rodríguez, Pablo (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Vegas Renedo, Juan (Centre de Recerca en Agrigenòmica) ;
Leida, Carmen (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Kenigswald, Merav (Minhal ha-meḥḳar ha-ḥaḳlaʼi (Israel)) ;
Tzuri, Galil (Minhal ha-meḥḳar ha-ḥaḳlaʼi (Israel)) ;
Troadec, Christelle (Institute of Plant Sciences Paris-Saclay) ;
Bendahmane, Abdelhafid (Institute of Plant Sciences Paris-Saclay) ;
Katzir, Nurit (Minhal ha-meḥḳar ha-ḥaḳlaʼi (Israel)) ;
Picó, Belén (Centro de Conservación y Mejora de la Agrodiversidad Valenciana) ;
Monforte, Antonio J. (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Fruit ripening is divided into climacteric and non-climacteric types depending on the presence or absence of a transient rise in respiration rate and the production of autocatalytic ethylene. Melon is ideal for the study of fruit ripening, as both climacteric and non-climacteric varieties exist. [...]
2017 - 10.1111/tpj.13596
The Plant journal, Vol. 91, issue 4 (Aug. 2017) , p. 671-683
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