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30 p, 3.7 MB Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa / Bassil, Nahla V. (United States Department of Agriculture. National Clonal Germplasm Repository) ; Davis, Thomas M. (University of New Hampshire) ; Zhang, Hailong (University of New Hampshire) ; Ficklin, Stephen (Washington State University) ; Mittmann, Mike (Affymetrix) ; Webster, Teresa (Affymetrix) ; Mahoney, Lise (University of New Hampshire) ; Wood, David (University of New Hampshire) ; Alperin, Elisabeth S. (United States Department of Agriculture. National Clonal Germplasm Repository) ; Rosyara, Umesh R. (Michigan State University) ; Koehorst-vanc Putten, Herma (Wageningen UR. Plant Breeding) ; Monfort Vives, Amparo (Centre de Recerca en Agrigenòmica) ; Sargent, Daniel J. (Fondazione Edmund Mach, Centro di Ricerca e Innovazione) ; Amaya, Iraida (Instituto de Investigación y Formación Agraria y Pesquera) ; Denoyes, Beatrice (Institut national de la recherche agronomique (França). Biologie du Fruit et Pathologie) ; Bianco, Luca (Fondazione Edmund Mach, Centro di Ricerca e Innovazione) ; Van Dijk, Thijs (Wageningen UR. Plant Breeding) ; Pirani, Ali (Affymetrix) ; Iezzoni (Michigan State University) ; Main, Dorrie (Washington State University) ; Peace, Cameron (Washington State University) ; Yang, Yilong (University of New Hampshire) ; Vance Whitaker, Vance (University of Florida) ; Verma, Sujeet · (University of Florida) ; Bellon, Laurent (Affymetrix) ; Brew, Fiona (Affymetrix) ; Herrera, Raul (Universidad de Talca. Instituto Ciencias Biologicas) ; Van de Weg, Eric (Wageningen UR. Plant Breeding)
Background: A high-throughput genotyping platform is needed to enable marker-assisted breeding in the allo-octoploid cultivated strawberry Fragaria × ananassa. Short-read sequences from one diploid and 19 octoploid accessions were aligned to the diploid Fragaria vesca ‘Hawaii 4’ reference genome to identify single nucleotide polymorphisms (SNPs) and indels for incorporation into a 90 K Affymetrix® Axiom® array. [...]
2015 - 10.1186/s12864-015-1310-1
BMC Genomics, Vol. 16 (2015) art. 155  

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