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1.
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18 p, 5.2 MB |
Fruit morphology and ripening-related QTLs in a newly developed introgression line collection of the elite varieties 'Védrantais' and 'Piel de Sapo'
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Santo Domingo, Miguel (Centre de Recerca en Agrigenòmica) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Valverde, Laura (Centre de Recerca en Agrigenòmica) ;
Martín-Hernández, Ana Montserrat (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica)
Melon is an economically important crop with widely diverse fruit morphology and ripening characteristics. Its diploid sequenced genome and multiple genomic tools make this species suitable to study the genetic architecture of fruit traits. [...]
2022 -  10.3390/plants11223120
Plants, Vol. 11, issue 22 (Nov. 2022) , art. 3120
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2.
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18 p, 7.7 MB |
Genetic dissection of climacteric fruit ripening in a melon population segregating for ripening behavior
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Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Santo Domingo, Miguel (Centre de Recerca en Agrigenòmica) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Phillips, Michael A. (University of Toronto. Department of Biology) ;
Zhao, Guangwei (Zhengzhou Fruit Research Institute) ;
Lian, Qun (Agricultural Genomics Institute at Shenzhen) ;
Xu, Yongyang (Zhengzhou Fruit Research Institute) ;
He, Yuhua (Zhengzhou Fruit Research Institute) ;
Huang, Sanwen (Agricultural Genomics Institute at Shenzhen) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Melon is as an alternative model to understand fruit ripening due to the coexistence of climacteric and non-climacteric varieties within the same species, allowing the study of the processes that regulate this complex trait with genetic approaches. [...]
2020 - 10.1038/s41438-020-00411-z
Horticulture research, Vol. 7 (November 2020) , art. 187
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3.
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13 p, 4.7 MB |
A novel introgression line collection to unravel the genetics of climacteric ripening and fruit quality in melon
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Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Santo Domingo, Miguel (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Valverde, Laura (Centre de Recerca en Agrigenòmica) ;
Martín-Hernández, Ana Montserrat (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Introgression lines are valuable germplasm for scientists and breeders, since they ease genetic studies such as QTL interactions and positional cloning as well as the introduction of favorable alleles into elite varieties. [...]
2021 - 10.1038/s41598-021-90783-6
Scientific reports, Vol. 11 (May 2021) , art 11364
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4.
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35 p, 12.9 MB |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits
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Zhao, Guangwei (Zhengzhou Fruit Research Institute) ;
Lian, Qun (Agricultural Genomics Institute at Shenzhen) ;
Zhang, Zhonghua (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Fu, Qiushi (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
He, Yuhua (Zhengzhou Fruit Research Institute) ;
Ma, Shuangwu (Zhengzhou Fruit Research Institute) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Monforte, Antonio J. (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Wang, Pingyong (Zhengzhou Fruit Research Institute) ;
Julca, Irene (Centre de Recerca en Agrigenòmica) ;
Wang, Huaisong (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Liu, Junpu (Zhengzhou Fruit Research Institute) ;
Xu, Yong (Beijing Key Laboratory of Vegetable Germplasm Improvement) ;
Wang, Runze (Nanjing Agricultural University) ;
Ji, Jiabing (Agricultural Genomics Institute at Shenzhen) ;
Xu, Zhihong (Zhengzhou Fruit Research Institute) ;
Kong, Weihu (Zhengzhou Fruit Research Institute) ;
Zhong, Yang (Agricultural Genomics Institute at Shenzhen) ;
Shang, Jianli (Zhengzhou Fruit Research Institute) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Zhang, Jian (Zhengzhou Fruit Research Institute) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Oren, Elad (NeweYa'ar Research Center) ;
Ou, Diandian (Zhengzhou Fruit Research Institute) ;
Wang, Jiming (Zhengzhou Fruit Research Institute) ;
Sun, Dexi (Zhengzhou Fruit Research Institute) ;
Zhao, Shengjie (Zhengzhou Fruit Research Institute) ;
Zhu, Yingchun (Zhengzhou Fruit Research Institute) ;
Li, Na (Zhengzhou Fruit Research Institute) ;
Katzir, Nurit (NeweYa'ar Research Center) ;
Gur, Amit (NeweYa'ar Research Center) ;
Dogimont, Catherine (Institut National de la Recherche Agronomique (França)) ;
Schaefer, Hanno (Technical University of Munich. Department of Ecology and Ecosystem Management) ;
Fan, Wei (Agricultural Genomics Institute at Shenzhen) ;
Bendahmane, Abdelhafid (Institut National de la Recherche Agronomique (França)) ;
Fei, Zhangjun (Cornell University. Boyce Thompson Institute for Plant Research) ;
Pitrat, Michel (Institut National de la Recherche Agronomique (França)) ;
Gabaldón, Toni (Centre de Regulació Genòmica) ;
Lin, Tao (Agricultural Genomics Institute at Shenzhen) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Xu, Yongyang (Zhengzhou Fruit Research Institute) ;
Huang, Sanwen (Agricultural Genomics Institute at Shenzhen)
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. [...]
2019 - 10.1038/s41588-019-0522-8
Nature genetics, Vol. 51, issue 11 (Nov. 2019) , p. 1607-1615
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5.
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9 p, 1.8 MB |
An improved assembly and annotation of the melon (Cucumis melo L.) reference genome
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Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Alexiou, Konstantinos G. (Institut de Recerca i Tecnologia Agroalimentàries) ;
Morata, Jordi (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Institut de Recerca i Tecnologia Agroalimentàries) ;
Yano, Ryoichi (University of Tsukuba. Faculty of Life and Environmental Sciences) ;
Nonaka, Satoko (University of Tsukuba. Faculty of Life and Environmental Sciences) ;
Ezura, Hiroshi (University of Tsukuba. Faculty of Life and Environmental Sciences) ;
Latrasse, David (University of Evry. Institute of Plant Sciences Paris-Saclay (IPS2)) ;
Boualem, Adnane (University of Evry. Institute of Plant Sciences Paris-Saclay (IPS2)) ;
Benhamed, Moussa (University of Evry. Institute of Plant Sciences Paris-Saclay (IPS2)) ;
Bendahmane, Abdelhafid (University of Evry. Institute of Plant Sciences Paris-Saclay (IPS2)) ;
Aiese Cigliano, Riccardo (Sequentia Biotech SL) ;
Sanseverino, Walter (Sequentia Biotech SL) ;
Puigdomènech, Pere, 1948- (Centre de Recerca en Agrigenòmica) ;
Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
We report an improved assembly (v3. 6. 1) of the melon (Cucumis melo L. ) genome and a new genome annotation (v4. 0). The optical mapping approach allowed correcting the order and the orientation of 21 previous scaffolds and permitted to correctly define the gap-size extension along the 12 pseudomolecules. [...]
2018 - 10.1038/s41598-018-26416-2
Scientific reports, Vol. 8 (May 2018) , art. 8088
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6.
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24 p, 591.8 KB |
Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
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Lü, Peitao (Chinese University of Hong Kong.School of Life Sciences) ;
Yu, Sheng (Chinese University of Hong Kong.School of Life Sciences) ;
Zhu, Ning (Chinese University of Hong Kong.School of Life Sciences) ;
Chen, Yun-Ru (Chinese University of Hong Kong.School of Life Sciences) ;
Zhou, Biyan (South China Agricultural University. College of Horticulture) ;
Pan, Yu (South China Agricultural University. College of Horticulture) ;
Tzeng, David (Chinese University of Hong Kong.School of Life Sciences) ;
Fabi, Joao Paulo (Universidade de São Paulo. Departamento de Alimentos e Nutrição Experimental) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Ye, Nenghui (Hong Kong Baptist University. Department of Biology) ;
Zhang, Jianhua (Hong Kong Baptist University. Department of Biology) ;
Grierson, Donald (University of Nottingham. School of Crop Sciences) ;
Xiang, Jenny (Cornell University. Weill Medical College) ;
Fei, Zhangjun (Boyce Thompson Institute) ;
Giovannoni, James (Boyce Thompson Institute) ;
Zhong, Silin (Chinese University of Hong Kong.School of Life Sciences)
Fleshy fruits using ethylene to regulate ripening have developed multiple times in the history of angiosperms, presenting a clear case of convergent evolution whose molecular basis remains largely unknown. [...]
2018 - 10.1038/s41477-018-0249-z
Nature plants, Vol. 4 (Oct. 2018) , p. 784-791
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7.
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20 p, 2.1 MB |
QTL analyses in multiple populations employed for the fine mapping and identification of candidate genes at a locus affecting sugar accumulation in melon (Cucumis melo L.)
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Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Díaz, Aurora (Instituto de Biología Molecular y Celular de Plantas) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Fernández, Marta (Semillas Fitó, S.L.) ;
Jahrmann, Torben (Semillas Fitó, S.L.) ;
Gibon, Yves (Institut National de la Recherche Agronomique (França)) ;
Picó, Belén (Universitat Politècnica de València. Instituto de Conservación y Mejora de la Agrodiversidad Valenciana) ;
Martín-Hernández, Ana Montserrat (Centre de Recerca en Agrigenòmica) ;
Monforte, Antonio J. (Instituto de Biología Molecular y Celular de Plantas) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Sugar content is the major determinant of both fruit quality and consumer acceptance in melon (Cucumis melo L), and is a primary target for crop improvement. Near-isogenic lines (NILs) derived from the intraspecific cross between a "Piel de Sapo" (PS) type and the exotic cultivar "Songwhan Charmi" (SC), and several populations generated from the cross of PS × Ames 24294 ("Trigonus"), a wild melon, were used to identify QTL related to sugar and organic acid composition. [...]
2017 - 10.3389/fpls.2017.01679
Frontiers in plant science, Vol. 8 (Sep. 2017) art. 1679
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8.
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14 p, 1.7 MB |
Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly
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Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia) ;
Madriz-Masis, Pablo (Centre de Recerca en Agrigenòmica) ;
Sanseverino, Walter (Centre de Recerca en Agrigenòmica) ;
Morata, Jordi (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Ramos-Onsins, Sebastian (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Universitat Autònoma de Barcelona.
Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí"
Background: The genome of the melon (Cucumis melo L. ) double-haploid line DHL92 was recently sequenced, with 87. 5 and 80. 8% of the scaffold assembly anchored and oriented to the 12 linkage groups, respectively. [...]
2015
BMC genomics, Vol. 16 (Jan. 2015) , art. 4
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9.
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66 p, 4.7 MB |
ETHQV6.3 is involved in melon climacteric fruit ripening and is encoded by a NAC domain transcription factor
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Ríos Rodríguez, Pablo (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Vegas Renedo, Juan (Centre de Recerca en Agrigenòmica) ;
Leida, Carmen (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Kenigswald, Merav (Minhal ha-meḥḳar ha-ḥaḳlaʼi (Israel)) ;
Tzuri, Galil (Minhal ha-meḥḳar ha-ḥaḳlaʼi (Israel)) ;
Troadec, Christelle (Institute of Plant Sciences Paris-Saclay) ;
Bendahmane, Abdelhafid (Institute of Plant Sciences Paris-Saclay) ;
Katzir, Nurit (Minhal ha-meḥḳar ha-ḥaḳlaʼi (Israel)) ;
Picó, Belén (Centro de Conservación y Mejora de la Agrodiversidad Valenciana) ;
Monforte, Antonio J. (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Fruit ripening is divided into climacteric and non-climacteric types depending on the presence or absence of a transient rise in respiration rate and the production of autocatalytic ethylene. Melon is ideal for the study of fruit ripening, as both climacteric and non-climacteric varieties exist. [...]
2017 - 10.1111/tpj.13596
The Plant journal, Vol. 91, issue 4 (Aug. 2017) , p. 671-683
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