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Depósito Digital de Documentos de la UAB Encontrados 4 registros  La búsqueda tardó 0.00 segundos. 
1.
17 p, 2.2 MB PlasForest : a homology-based random forest classifier for plasmid detection in genomic datasets / Pradier, Léa (Université de Montpellier) ; Tissot, Tazzio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Fiston-Lavier, Anna-Sophie (Centre National de la Recherche Scientifique (França)) ; Bedhomme, Stéphanie (Université de Montpellier)
Plasmids are mobile genetic elements that often carry accessory genes, and are vectors for horizontal transfer between bacterial genomes. Plasmid detection in large genomic datasets is crucial to analyze their spread and quantify their role in bacteria adaptation and particularly in antibiotic resistance propagation. [...]
2021 - 10.1186/s12859-021-04270-w
BMC bioinformatics, Vol. 22 (June 2021) , art. 349  
Registro completo - Creative Commons
2.
7 p, 1.9 MB T-lex3 : An accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data / Bogaerts-Márquez, María (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Barrón Aduriz, Maite Garazi (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Fiston-Lavier, Anna-Sophie (Institut des Sciences de l'Evolution de Montpellier) ; Vendrell Mir, Pol (Centre de Recerca en Agrigenòmica) ; Castanera, Raúl (Centre de Recerca en Agrigenòmica) ; Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica) ; González, Josefa (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Motivation: Transposable elements (TEs) constitute a significant proportion of the majority of genomes sequenced to date. TEs are responsible for a considerable fraction of the genetic variation within and among species. [...]
2020 - 10.1093/bioinformatics/btz727
Bioinformatics, Vol. 36, Issue 4 (February 2020) , p. 1191-1197  
Registro completo - Creative Commons
3.
9 p, 588.8 KB A call for benchmarking transposable element annotation methods / Hoen, Douglas R. (McGill University. Department of Biology) ; Hickey, Glenn (McGill Centre for Bioinformatics) ; Bourque, Guillaume (McGill University) ; Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica) ; Cordaux, Richard (Université de Poitiers) ; Feschotte, Cédric (University of Utah. Department of Human Genetics) ; Fiston-Lavier, Anna-Sophie (Institut des Sciences de l'Evolution de Montpellier) ; Hua-Van, Aurélie (Université Paris-Saclay) ; Hubley, Robert (Institute for Systems Biology) ; Kapusta, Aurélie (University of Utah. Department of Human Genetics) ; Lerat, Emmanuelle (Université Claude Bernard) ; Maumus, Florian (INRA de Versailles-Grignon) ; Pollock, David D. (University of Colorado) ; Quesneville, Hadi (INRA de Versailles-Grignon) ; Smit, Arian (Institute for Systems Biology) ; Wheeler, Travis J. (University of Montana. Department of Computer Science) ; Bureau, Thomas E. (McGill University. Department of Biology) ; Blanchette, Mathieu (McGill Centre for Bioinformatics)
DNA derived from transposable elements (TEs) constitutes large parts of the genomes of complex eukaryotes, with major impacts not only on genomic research but also on how organisms evolve and function. [...]
2015 - 10.1186/s13100-015-0044-6
Mobile DNA, Vol. 6 (August 2015) , art. 13  
Registro completo - Creative Commons
4.
16 p, 3.7 MB T-lex2 : genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data / Fiston-Lavier, Anna-Sophie (Institut des Sciences de l'Evolution de Montpellier) ; Barrón Aduriz, Maite Garazi (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Petrov, Dmitri A. (Department of Biology, Stanford University) ; González, Josefa (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Transposable elements (TEs) constitute the most active, diverse and ancient component in a broad range of genomes. Complete understanding of genome function and evolution cannot be achieved without a thorough understanding of TE impact and biology. [...]
2014 - 10.1093/nar/gku1250
Nucleic acids research, Vol. 43 (december 2014) , p. e22  
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