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10 p, 1.6 MB |
The genome of woodland strawberry (Fragaria vesca)
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Shulaev, Vladimir (University of North Texas. Department of Biological Sciences) ;
Sargent, Daniel J. (East Malling Research) ;
Crowhurst, Ross (New Zealand Institute for Plant and Food Research Limited) ;
Mockler, Todd C. (Oregon State University. Center for Genome Research and Biocomputing) ;
Folkerts, Otto (Chromatin Inc.) ;
Delcher, Arthur L. (University of Maryland. Center for Bioinformatics and Computational Biology) ;
Jaiswal, Pankaj (Oregon State University. Department of Botany and Plant Pathology) ;
Mockaitis, Keithanne (Indiana University. Center for Genomics and Bioinformatics) ;
Liston, Aaron (Oregon State University. Department of Botany and Plant Pathology) ;
Mane, Shrinivasrao P. (Virginia Bioinformatics Institute) ;
Burns, Paul (Joint Georgia Tech and Emory Wallace H. Coulter. Department of Biomedical Engineering) ;
Davis, Thomas M. (University of New Hampshire. Department of Biological Sciences) ;
Slovin, Janet P. (Henry Wallace Beltsville Agricultural Research Center) ;
Bassil, Nahla (National Clonal Germplasm Repository) ;
Hellens, Roger P. (New Zealand Institute for Plant and Food Research Limited) ;
Evans, Clive (State University. Virginia Bioinformatics Institute) ;
Harkins, Tim (Roche Diagnostics. Roche Applied Science) ;
Kodira, Chinnappa (Roche Diagnostics. Roche Applied Science) ;
Desany, Brian (Roche Diagnostics. Roche Applied Science) ;
Crasta, Oswald R. (Chromatin Inc.) ;
Jensen, Roderick V. (Virginia Tech. Department of Biological Sciences) ;
Allan, Andrew C. (New Zealand Institute for Plant and Food Research Limited) ;
Michael, Todd P. (State University of New Jersey. Waksman Institute of Microbiology) ;
Setubal, Joao Carlos (Virginia Tech. Department of Computer Science) ;
Celton, Jean-Marc (University of the Western Cape. Department of Biotechnology) ;
Rees, D. Jasper G. (University of the Western Cape. Department of Biotechnology) ;
Williams, Kelly P. (State University. Virginia Bioinformatics Institute) ;
Holt, Sarah H. (Institute for Sustainable and Renewable Resources) ;
Rojas, Juan Jairo (State University. Virginia Polytechnic Institute. Department of Horticulture) ;
Chatterjee, Mithu (University of Florida. Graduate Program for Plant Molecular and Cellular Biology) ;
Liu, Bo (University of New Hampshire. Department of Biological Sciences) ;
Silva, Herman (University of Chile. Millennium Nucleus in Plant Cell Biotechnology) ;
Meisel, Lee (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology) ;
Adato, Avital (Weizmann Institute of Science (Israel). Department of Plant Sciences) ;
Filichkin, Sergei A. (Oregon State University. Center for Genome Research and Biocomputing) ;
Troggio, Michela (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige () ;
Viola, Roberto (Istituto Agrario San Michele all'Adige (IASMA). Research and Innovation Centre. Foundation Edmund Mach) ;
Ashman, Tia-Lynn (University of Pittsburgh. Department of Biological Sciences) ;
Wang, Hao (University of Georgia. Department of Genetics) ;
Dharmawardhana, Palitha (Oregon State University. Department of Botany and Plant Pathology) ;
Elser, Justin (Oregon State University. Department of Botany and Plant Pathology) ;
Raja, Rajani (Oregon State University. Department of Botany and Plant Pathology) ;
Priest, Henry D. (Oregon State University. Center for Genome Research and Biocomputing) ;
Bryant, Douglas W. (Oregon State University. Center for Genome Research and Biocomputing) ;
Fox, Samuel E. (Oregon State University. Center for Genome Research and Biocomputing) ;
Givan, Scott A. (Oregon State University. Center for Genome Research and Biocomputing) ;
Wilhelm, Larry J. (Oregon State University. Center for Genome Research and Biocomputing) ;
Naithani, Sushma (Oregon State University. Department of Horticulture) ;
Christoffels, Alan (University of the Western Cape. South African National Bioinformatics Institute) ;
Salama, David Y. (University of Florida. Horticultural Sciences Department) ;
Carter, Jade (Indiana University. Center for Genomics and Bioinformatics) ;
Girona, Elena L. (East Malling Research) ;
Zdepski, Anna (State University of New Jersey. Waksman Institute of Microbiology) ;
Wang, Wenqin (State University of New Jersey. Waksman Institute of Microbiology) ;
Kerstetter, Randall A. (State University of New Jersey. Waksman Institute of Microbiology) ;
Schwab, Wilfried (Technical University München. Biotechnology of Natural Products) ;
Korban, Schuyler S. (University of Illinois. Department of Natural Resources and Environmental Sciences) ;
Davik, Jahn (Norwegian Institute for Agricultural and Environmental Research. Genetics and Biotechnology) ;
Monfort, Amparo (Centre de Recerca en Agrigenòmica) ;
Denoyes, Beatrice (Institut National de la Recherche Agronomique (França)) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Mittler, Ron (University of North Texas. Department of Biological Sciences) ;
Flinn, Barry (Institute for Sustainable and Renewable Resources. Institute for Advanced Learning and Research) ;
Aharoni, Asaph (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology. Centro de Biotecnología Vegetal.) ;
Bennetzen, Jeffrey L. (University of Georgia. Department of Genetics) ;
Salzberg, Steven L. (University of Maryland. Center for Bioinformatics and Computational Biology) ;
Dickerman, Allan W. (State University. Virginia Bioinformatics Institute. Virginia Polytechnic Institute) ;
Velasco, Riccardo (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige) ;
Borodovsky, Mark (Georgia Tech. School of Computational Science and Engineering) ;
Veilleux, Richard E. (State University. Virginia Polytechnic Institute. Department of Horticulture) ;
Folta, Kevin M. (University of Florida. Graduate Program for Plant Molecular and Cellular Biology)
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria Ã- ananassa) and other economically important rosaceous plants. [...]
2011 -  10.1038/ng.740
Nature genetics, Vol. 43, Issue 2 (February 2011) , p. 109-116
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17 p, 10.3 MB |
A specific Gibberellin 20-oxidase dictates the flowering-runnering decision in diploid strawberry
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Tenreira, Tracey (Unité Mixte de Recherche Inra-Université de Bordeaux) ;
Pimenta Lange, Maria Joao (Technische Universität Braunschweig. Institut für Pflanzenbiologie) ;
Lange, Theo (Technische Universität Braunschweig. Institut für Pflanzenbiologie) ;
Bres, Cécile (Unité Mixte de Recherche Inra-Université de Bordeaux) ;
Labadie, Marc (Unité Mixte de Recherche Inra-Université de Bordeaux) ;
Monfort, Amparo (Centre de Recerca en Agrigenòmica) ;
Hernould, Michel (Unité Mixte de Recherche Inra-Université de Bordeaux) ;
Rothan, Christophe (Unité Mixte de Recherche Inra-Université de Bordeaux) ;
Denoyes, Beatrice (Unité Mixte de Recherche Inra-Université de Bordeaux)
Asexual and sexual reproduction occur jointly in many angiosperms. Stolons (elongated stems) are used for asexual reproduction in the crop species potato (Solanum tuberosum) and strawberry (Fragaria spp), where they produce tubers and clonal plants, respectively. [...]
2017 - 10.1105/tpc.16.00949
The Plant Cell, Vol. 29, issue 9 (Sep. 2017) , p. 2168-2182
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3.
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30 p, 3.7 MB |
Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa
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Bassil, Nahla (United States Department of Agriculture. National Clonal Germplasm Repository) ;
Davis, Thomas M. (University of New Hampshire) ;
Zhang, Hailong (University of New Hampshire) ;
Ficklin, Stephen (Washington State University) ;
Mittmann, Mike (Affymetrix) ;
Webster, Teresa (Affymetrix) ;
Mahoney, Lise (University of New Hampshire) ;
Wood, David (University of New Hampshire) ;
Alperin, Elisabeth S. (United States Department of Agriculture. National Clonal Germplasm Repository) ;
Rosyara, Umesh R. (Michigan State University) ;
Koehorst-vanc Putten, Herma (Wageningen UR. Plant Breeding) ;
Monfort, Amparo (Centre de Recerca en Agrigenòmica) ;
Sargent, Daniel J. (Fondazione Edmund Mach, Centro di Ricerca e Innovazione) ;
Amaya, Iraida (Instituto de Investigación y Formación Agraria y Pesquera) ;
Denoyes, Beatrice (Institut national de la recherche agronomique (França). Biologie du Fruit et Pathologie) ;
Bianco, Luca (Fondazione Edmund Mach, Centro di Ricerca e Innovazione) ;
Van Dijk, Thijs (Wageningen UR. Plant Breeding) ;
Pirani, Ali (Affymetrix) ;
Iezzoni, Amy (Michigan State University) ;
Main, Dorrie (Washington State University) ;
Peace, Cameron (Washington State University) ;
Yang, Yilong (University of New Hampshire) ;
Vance Whitaker, Vance (University of Florida) ;
Verma, Sujeet · (University of Florida) ;
Bellon, Laurent (Affymetrix) ;
Brew, Fiona (Affymetrix) ;
Herrera, Raul (Universidad de Talca. Instituto Ciencias Biologicas) ;
Van de Weg, Eric (Wageningen UR. Plant Breeding)
Background: A high-throughput genotyping platform is needed to enable marker-assisted breeding in the allo-octoploid cultivated strawberry Fragaria × ananassa. Short-read sequences from one diploid and 19 octoploid accessions were aligned to the diploid Fragaria vesca 'Hawaii 4' reference genome to identify single nucleotide polymorphisms (SNPs) and indels for incorporation into a 90 K Affymetrix® Axiom® array. [...]
2015 - 10.1186/s12864-015-1310-1
BMC genomics, Vol. 16 (2015) art. 155
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