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19 p, 8.7 MB |
Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation
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Jensen, Axel (Uppsala University. Department of Ecology and Genetics, Animal Ecology) ;
Swift, Frances (University of Edinburgh. School of Biological Sciences) ;
de Vries, Dorien (University of Salford. School of Science, Engineering and Environment) ;
Beck, Robin (University of Salford. School of Science, Engineering & Environment) ;
Kuderna, Lukas (Illumina Inc) ;
Knauf, Sascha (Federal Research Institute for Animal Health) ;
Chuma, Idrissa S. (Tanzania National Parks) ;
Keyyu, Julius (Tanzania Wildlife Research Institute) ;
Kitchener, Andrew (University of Edinburgh. University of Edinburgh) ;
Farh, Kyle (Illumina Inc) ;
Rogers, Jeffrey (Baylor College of Medicine. Human Genome Sequencing Center) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Detwiler, Kate (Florida Atlantic University. Department of Biological Sciences) ;
Roos, Christian (Leibniz Institute for Primate Research. German Primate Center) ;
Guschanski, Katerina (Uppsala University. Department of Ecology and Genetics)
Understanding the drivers of speciation is fundamental in evolutionary biology, and recent studies highlight hybridization as an important evolutionary force. Using whole-genome sequencing data from 22 species of guenons (tribe Cercopithecini), one of the world's largest primate radiations, we show that rampant gene flow characterizes their evolutionary history and identify ancient hybridization across deeply divergent lineages that differ in ecology, morphology, and karyotypes. [...]
2023 -  10.1093/molbev/msad247
Molecular Biology and Evolution, Vol. 40, Issue 12 (December 2023) , art. msad247
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18 p, 2.3 MB |
Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes
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Pfrengle, Saskia (University of Tübingen. Institute of Evolutionary Medicine) ;
Neukamm, Judith (University of Tübingen. Institute for Archaeological Sciences) ;
Guellil, Meriam (University of Tartu. Estonian Biocentre, Institute of Genomics) ;
Keller, Marcel (University of Tartu. Institute of Genomics) ;
Molak, Martyna (University of Warsaw. Centre of New Technologies) ;
Avanzi, Charlotte (Colorado State University. Department of Microbiology, Immunology and Pathology) ;
Kushniarevich, Alena (University of Tartu. Institute of Genomics) ;
Montes, Núria (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Neumann, Gunnar U. (Max Planck Institute for the Science of Human History) ;
Reiter, Ella (University of Tübingen. Institute for Archaeological Sciences) ;
Tukhbatova, Rezeda I. (Max Planck Institute for the Science of Human History) ;
Berezina, Nataliya Y. (Moscow State University. Research Institute and Museum of Anthropology) ;
Buzhilova, Alexandra P. (Moscow State University. Research Institute and Museum of Anthropology) ;
Korobov, Dmitry S. (Russian Academy of Sciences. Institute of Archaeology) ;
Suppersberger Hamre, Stian (University of Bergen. Department of Archaeology, History, Cultural studies and religion) ;
Matos, Vitor M. J. (University of Coimbra. Department of Life Sciences) ;
Ferreira, Maria T. (Universidad de León. Departamento de Biodiversidad y Gestión Ambiental) ;
González-Garrido, Laura (Universidad de León. Departamento de Biodiversidad y Gestión Ambiental) ;
Wasterlain, Sofia N. (University of Coimbra. Department of Life Sciences) ;
Lopes, Célia (University of Coimbra. Department of Life Sciences) ;
Santos, Ana Luisa (University of Coimbra. Department of Life Sciences) ;
Antunes-Ferreira, Nathalie (Instituto Universitário Egas Moniz) ;
Duarte, Vitória (University of Coimbra. Department of Life Sciences) ;
Silva, Ana Maria (University of Coimbra. Department of Life Sciences) ;
Melo, Linda (University of Coimbra. Department of Life Sciences) ;
Sarkic, Natasa (OSTEO Research) ;
Saag, Lehti (University of Tartu. Institute of Genomics) ;
Tambets, Kristiina (University of Tartu. Institute of Genomics) ;
Busso, Philippe (Ecole Polytechnique Fédérale de Lausanne. Global Health Institute) ;
Cole, Stewart T. (Ecole Polytechnique Fédérale de Lausanne. Global Health Institute) ;
Avlasovich, Alexei (Mogilev State A. Kuleshov University. Department of Archeology, History of Belarus and Special Historical Disciplines) ;
Roberts, Charlotte A. (Durham University. Department of Archaeology) ;
Sheridan, Alison (National Museums Scotland. Department of Scottish History and Archaeology) ;
Cessford, Craig (University of Cambridge. Department of Archaeology) ;
Robb, John (University of Cambridge. Department of Archaeology) ;
Krause, Johannes (University of Tübingen. Institute for Archaeological Sciences) ;
Scheib, Christiana L. (University of Cambridge. St John's College) ;
Inskip, Sarah A. (University of Leicester. School of Archaeology and Ancient History) ;
Schuenemann, Verena J. (University of Tübingen. Senckenberg Centre for Human Evolution and Paleoenvironments)
Hansen's disease (leprosy), widespread in medieval Europe, is today mainly prevalent in tropical and subtropical regions with around 200,000 new cases reported annually. Despite its long history and appearance in historical records, its origins and past dissemination patterns are still widely unknown. [...]
2021 - 10.1186/s12915-021-01120-2
BMC biology, Vol. 19 (2021) , art. 220
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26 p, 17.4 MB |
High-depth African genomes inform human migration and health
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Choudhury, Ananyo (University of the Witwatersrand) ;
Aron, S. (University of the Witwatersrand) ;
Botigué, Laura (Centre de Recerca en Agrigenòmica) ;
Sengupta, D. (University of the Witwatersrand) ;
Botha, G. (University of Cape Town) ;
Bensellak, T. (Abdelmalek Essaadi University) ;
Wells, G. (University of the Western Cape) ;
Kumuthini, J. (University of the Western Cape) ;
Shriner, Daniel (National Institutes of Health (USA)) ;
Fakim, Y. J. (University of Mauritius) ;
Ghoorah, A. W. (University of Mauritius) ;
Dareng, E. (Institute of Human Virology Nigeria) ;
Odia, T. (Covenant University) ;
Falola, O. (Covenant University) ;
Adebiyi, E. (Covenant University) ;
Hazelhurst, S. (University of the Witwatersrand) ;
Mazandu, G. (University of Cape Town) ;
Nyangiri, O. A. (Makerere University) ;
Mbiyavanga, M. (University of Cape Town) ;
Benkahla, A. (Institute Pasteur of Tunis) ;
Kassim, S. K. (Ain Shams University (El Caire, Egipte)) ;
Mulder, N. (University of Cape Town) ;
Adebamowo, S. N. (University of Maryland Baltimore) ;
Chimusa, E. R. (University of Cape Town) ;
Muzny, D. (Baylor College of Medicine) ;
Metcalf, G. (Baylor College of Medicine) ;
Gibbs, R. A. (Baylor College of Medicine) ;
Rotimi, C. (National Institutes of Health (USA)) ;
Ramsay, M. (University of the Witwatersrand) ;
Adeyemo, Adebowale A (National Institutes of Health (USA)) ;
Lombard, Z. (University of the Witwatersrand) ;
Hanchard, N. A. (Baylor College of Medicine) ;
TrypanoGEN Research Group ;
H3Africa Consortium
The African continent is regarded as the cradle of modern humans and African genomes contain more genetic variation than those from any other continent, yet only a fraction of the genetic diversity among African individuals has been surveyed. [...]
2020 - 10.1038/s41586-020-2859-7
Nature, Vol. 586 (October 2020) , p. 741-748
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14 p, 1.8 MB |
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
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Barnett, Ross (University of Copenhagen. Section for Evolutionary Genomics) ;
Westbury, Michael V. (University of Copenhagen. Section for Evolutionary Genomics) ;
Sandoval-Velasco, Marcela (University of Copenhagen. Section for Evolutionary Genomics) ;
Garrett Vieira, Filipe (University of Copenhagen. Section for Evolutionary Genomics) ;
Jeon, Sungwon (Ulsan National Institute of Science and Technology. Department of Biomedical Engineering) ;
Zazula, Grant (Government of Yukon. Yukon Palaeontology Program) ;
Martin, Michael (Norwegian University of Science and Technology. Department of Natural History) ;
Ho, Simon Y. W. (University of Sydney. School of Life and Environmental Sciences) ;
Mather, Niklas (University of Sydney. School of Life and Environmental Sciences) ;
Gopalakrishnan, Shyam (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Ramos-Madrigal, Jazmín (University of Copenhagen. Center for Evolutionary Hologenomics) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Zepeda Mendoza, Marie Lisandra (University of Birmingham. Institute of Microbiology and Infection) ;
Antunes, Agostinho (University of Porto. Department of Biology) ;
Baez, Aldo Carmon (University of Copenhagen. Section for Evolutionary Genomics) ;
De Cahsan, Binia (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Larson, Greger (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
O'Brien, Stephen J. (Nova Southeastern University. Guy Harvey Oceanographic Center) ;
Eizirik, Eduardo (Instituto Pró-Carnívoros) ;
Johnson, Warren E. (Walter Reed Army Institute of Research) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute. Center for Species Survival) ;
Wilting, Andreas (Leibniz Institute for Zoo and Wildlife Research) ;
Fickel, Jöms (University of Potsdam. Institute for Biochemistry and Biology) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics) ;
Lorenzen, Eline D. (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Hansen, Anders J. (University of Copenhagen. Section for GeoGenetics) ;
Zhang, Guojie (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Bhak, Jong (Personal Genomics Institute. Genome Research Foundation) ;
Yamaguchi, Nobuyuki (Universiti Malaysia Terengganu. Institute of Tropical Biodiversity and Sustainable Development) ;
Gilbert, M. Thomas P. (University of Copenhagen. Center for Evolutionary Hologenomics)
Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine teeth, powerful forelimbs, a sloping back, and an enlarged optic bulb, all of which were key characteristics for predation on Pleistocene megafauna [5]. [...]
2020 - 10.1016/j.cub.2020.09.051
Current Biology, Vol. 30, Issue 24 (December 2020) , p. ages 5018-5025.e5
2 documentos
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19 p, 6.6 MB |
Evolutionary history, genomic adaptation to toxic diet, and extinction of the Carolina Parakeet
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Gelabert, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Sandoval Velasco, Marcela (University of Copenhagen. The GLOBE Institute) ;
Serres, Aitor (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Renom, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
Stiller, Josefin (University of Copenhagen. Department of Biology) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Fang, Qi (BGI-Shenzhen (China)) ;
Feng, Shaohong (BGI-Shenzhen (China)) ;
Mañosa, Santi (Universitat de Barcelona. Institut de Recerca de la Biodiversitat (IRBio)) ;
Pacheco, George (University of Copenhagen. The GLOBE Institute) ;
Ferrando-Bernal, Manuel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Shi, Guolin (Northwestern Polytechnical University. Center of Special Environmental Biomechanics & Biomedical Engineering) ;
Hao, Fei (Northwestern Polytechnical University. Center of Special Environmental Biomechanics & Biomedical Engineering) ;
Chen, Xianqing (Northwestern Polytechnical University. Center for Ecological and Environmental Sciences) ;
Petersen, Bent (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Olsen, Remi-André (Stockholm University. Department of Biochemistry and Biophysics) ;
Navarro, Arcadi, 1969- (Institució Catalana de Recerca i Estudis Avançats) ;
Deng, Yuan (BGI-Shenzhen (China)) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Zhang, Guojie (Chinese Academy of Sciences. Center for Excellence in Animal Evolution and Genetics) ;
Antunes, Agostinho (University of Porto. Department of Biology) ;
Gilbert, M. Thomas P. (NTNU University Museum (Norway)) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
As the only endemic neotropical parrot to have recently lived in the northern hemisphere, the Carolina parakeet (Conuropsis carolinensis) was an iconic North American bird. The last surviving specimen died in the Cincinnati Zoo in 1918 [1]. [...]
2020 - 10.1016/j.cub.2019.10.066
Current biology, Vol. 30, Issue 1 (January 2020) , p. 108-114
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18 p, 2.3 MB |
The genomic footprints of the fall and recovery of the crested ibis
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Feng, Shaohong (University of Chinese Academy of Sciences) ;
Fang, Qi (China National GeneBank) ;
Barnett, Ross (Københavns Universitet. Sektion for GeoGenetik) ;
Li, Cai (China National GeneBank) ;
Han, Sojung 1984- (Institute of Evolutionary Biology) ;
Kuhlwilm, Martin (Institute of Evolutionary Biology) ;
Zhou, Long (China National GeneBank) ;
Pan, Hailin (China National GeneBank) ;
Deng, Yuan (China National GeneBank) ;
Chen, Guangji (University of Chinese Academy of Sciences) ;
Gamauf, Anita (Naturhistorisches Museum Wien) ;
Woog, Friederike (Staatliches Museum für Naturkunde) ;
Prys-Jones, Robert (The Natural History Museum) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
P. Gilbert, M. Thomas (Københavns Universitet. Sektion for GeoGenetik) ;
Zhang, Guojie (China National GeneBank)
Human-induced environmental change and habitat fragmentation pose major threats to biodiversity and require active conservation efforts to mitigate their consequences. Genetic rescue through translocation and the introduction of variation into imperiled populations has been argued as a powerful means to preserve, or even increase, the genetic diversity and evolutionary potential of endangered species [1, 2, 3, 4]. [...]
2019 - 10.1016/j.cub.2018.12.008
Current biology, Vol. 29, issue 2 (Jan. 2019) , p. 340-349
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