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34 p, 19.3 MB |
A compendium of genetic regulatory effects across pig tissues
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Teng, Jinyan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Gao, Yahui (University of Maryland. Department of Animal and Avian Sciences) ;
Yin, Hongwei (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Bai, Zhonghao (The University of Edinburgh) ;
Liu, Shuli (Westlake University) ;
Zeng, Haonan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Bai, Lijing (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Cai, Zexi (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Zhao, Bingru (China Agricultural University) ;
Li, Xiujin (Zhongkai University of Agriculture and Engineering) ;
Xu, Zhiting (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Lin, Qing (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Pan, Zhangyuan (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ;
Yang, Wenjing (University of California, Davis. Department of Animal Science) ;
Yu, Xiaoshan (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer) ;
Guan, Dailu (University of California. Department of Animal Science) ;
Hou, Yali (Chinese Academy of Sciences and China National Center for Bioinformation) ;
Keel, Brittney N. (U.S. Meat Animal Research Center) ;
Rohrer, Gary A. (U.S. Meat Animal Research Center) ;
Lindholm-Perry, Amanda K. (U.S. Meat Animal Research Center) ;
Oliver, William T. (U.S. Meat Animal Research Center) ;
Ballester Devis, Maria (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Crespo-Piazuelo, Daniel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Quintanilla, Raquel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Canela-Xandri, Oriol (University of Edinburgh) ;
Rawlik, Konrad (University of Edinburgh. Baillie Gifford Pandemic Science Hub) ;
Xia, Charley (University of Edinburgh. Department of Psychology) ;
Yao, Yuelin (University of Edinburgh) ;
Zhao, Qianyi (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Yao, Wenye (Wageningen University and Research) ;
Yang, Liu (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Li, Houcheng (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Zhang, Huicong (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Liao, Wang (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ;
Chen, Tianshuo (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ;
Karlskov-Mortensen, Peter (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Consejo Superior de Investigaciones Científicas) ;
Giuffra, Elisabetta (Paris-Saclay University) ;
Wu, Jun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Cai, Xiaodian (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Diao, Shuqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Pan, Xiangchun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Wei, Chen (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Li, Jinghui (University of California, Davis. Department of Animal Science) ;
Cheng, Hao (University of California, Davis. Department of Animal Science) ;
Wang, Sheng (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Su, Guosheng (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Sahana, Goutam (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Lund, Mogens Sandø (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Dekkers, Jack C. M. (Iowa State University. Department of Animal Science) ;
Kramer, Luke (Iowa State University. Department of Animal Science) ;
Tuggle, Christopher K. (Iowa State University. Department of Animal Science) ;
Corbett, Ryan (Iowa State University. Department of Animal Science) ;
Groenen, Martien A. M. (Wageningen University and Research. Animal Breeding and Genomics) ;
Madsen, Ole (Wageningen University and Research. Animal Breeding and Genomics) ;
Gòdia, Marta (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Rocha, Dominique (Paris-Saclay University) ;
Charles, Mathieu (Paris-Saclay University) ;
Li, Cong-jun (Henry A. Wallace Beltsville Agricultural Research Center) ;
Pausch, Hubert (Animal Genomics) ;
Hu, Xiaoxiang (China Agricultural University. State Key Laboratory of Agrobiotechnology) ;
Frantz, Laurent (Queen Mary University of London. School of Biological and Behavioural Sciences) ;
Luo, Yonglun (Qingdao-Europe Advanced Institute for Life Sciences. Lars Bolund Institute of Regenerative Medicine) ;
Lin, Lin (Aarhus University Hospital. Steno Diabetes Center Aarhus) ;
Zhou, Zhongyin (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Zhang, Zhe (Zhejiang University. Department of Animal Science) ;
Chen, Zitao (Zhejiang University. Department of Animal Science) ;
Cui, Leilei (University College London. UCL Genetics Institute) ;
Xiang, Ruidong (Centre for AgriBiosciences) ;
Shen, Xia (University of Edinburgh. Centre for Global Health Research) ;
Li, Pinghua (Nanjing Agricultural University. Institute of Swine Science) ;
Huang, Ruihua (Nanjing Agricultural University. Institute of Swine Science) ;
Tang, Guoqing (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ;
Li, Mingzhou (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ;
Zhao, Yunxiang (Guangxi University. College of Animal Science and Technology) ;
Yi, Guoqiang (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Tang, Zhonglin (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Jiang, Jicai (North Carolina State University. Department of Animal Science) ;
Zhao, Fuping (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ;
Yuan, Xiaolong (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Liu, Xiaohong (Sun Yat-sen University. State Key Laboratory of Biocontrol) ;
Chen, Yaosheng (Sun Yat-sen University. State Key Laboratory of Biocontrol) ;
Xu, Xuewen (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ;
Zhao, Shuhong (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ;
Zhao, Pengju (Hainan Institute, Zhejiang University) ;
Haley, Chris (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Zhou, Huaijun (University of California. Department of Animal Science) ;
Wang, Qishan (Zhejiang University. Department of Animal Science) ;
Pan, Yuchun (Zhejiang University. Department of Animal Science) ;
Ding, Xiangdong (China Agricultural University. College of Animal Science and Technology) ;
Ma, Li (University of Maryland. Department of Animal and Avian Sciences) ;
Li, Jiaqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Navarro, Pau (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Zhang, Qin (Shandong Agricultural University. College of Animal Science and Technology) ;
Li, Bingjie (Scotland's Rural College. Roslin Institute Building) ;
Tenesa, Albert (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Li, Kui (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Liu, George E. (U.S. Department of Agriculture) ;
Zhang, Zhe (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Fang, Lingzhao (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer)
The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been established to develop a public resource of genetic regulatory variants in livestock, which is essential for linking genetic polymorphisms to variation in phenotypes, helping fundamental biological discovery and exploitation in animal breeding and human biomedicine. [...]
2024 -  10.1038/s41588-023-01585-7
Nature genetics, Vol. 56 (january 2024) , p. 112-123
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1 p, 573.5 KB |
Correction to : Genome-wide SNP data unveils the globalization of domesticated pigs
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Yang, Bin (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Cui, Leilei (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Traspov, Aleksei (Federal Science Center for Animal Husbandry named after Academy Member L.K. Ernst) ;
Crooijmans, Richard (Wageningen University. Animal Breeding and Genomics) ;
Zinovieva, Natalia (Federal Science Center for Animal Husbandry named after Academy Member L.K. Ernst) ;
Schook, Lawrence B. (University of Illinois. Institute of Genomic Biology) ;
Archibald, Alan L (University of Edinburgh. The Roslin Institute) ;
Gatphayak, Kesinee (Chiang Mai University. Animal and Aquatic Sciences) ;
Knorr, Christophe (University of Göttingen. Department of Animal Sciences) ;
Triantafyllidis, Alex (Aristotle University of Thessaloníki. Department of Genetics, Development and Molecular Biology) ;
Alexandri, Panoraia (Aristotle University of Thessaloníki. Department of Genetics, Development and Molecular Biology) ;
Semiadi, Gono (Lembaga Ilmu Pengetahuan Indonesia. Research Centre for Biology-Zoology Division) ;
Hanotte, Olivier (University of Nottingham. School of Biology) ;
Dias, Deodália (Universidade de Lisboa. Faculdade de Ciências) ;
Dovč, Peter (University of Ljubljana. Department of Animal Science) ;
Uimari, Pekka (University of Helsinki. Department of Agricultural Sciences) ;
Iacolina, Laura (University of Sassari. Department of Science for Nature and Environmental Resources) ;
Scandura, Massimo (University of Sassari. Department of Science for Nature and Environmental Resources) ;
Groenen, Martien A. M. (Wageningen University. Animal Breeding and Genomics) ;
Huang, Lusheng (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Megens, Hendrik-Jan (Wageningen University. Animal Breeding and Genomics)
2020 - 10.1186/s12711-020-00549-3
Genetics, selection, evolution, Vol. 52 (June 2020) . art. 30
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15 p, 2.4 MB |
Genome-wide SNP data unveils the globalization of domesticated pigs
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Yang, Bin (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Cui, Leilei (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica) ;
Traspov, Aleksei (Federal Science Center for Animal Husbandry named after Academy Member L.K. Ernst) ;
Crooijmans, Richard (Wageningen University. Animal Breeding and Genomics) ;
Zinovieva, Natalia (Federal Science Center for Animal Husbandry named after Academy Member L.K. Ernst) ;
Schook, Lawrence B. (University of Illinois. Institute of Genomic Biology) ;
Archibald, Alan L (University of Edinburgh. The Roslin Institute) ;
Gatphayak, Kesinee (Chiang Mai University. Animal and Aquatic Sciences) ;
Knorr, Christophe (University of Göttingen. Department of Animal Sciences) ;
Triantafyllidis, Alex (Aristotle University of Thessaloníki. Department of Genetics, Development and Molecular Biology) ;
Alexandri, Panoraia (Aristotle University of Thessaloníki. Department of Genetics, Development and Molecular Biology) ;
Semiadi, Gono (Lembaga Ilmu Pengetahuan Indonesia. Research Centre for Biology-Zoology Division) ;
Hanotte, Olivier (University of Nottingham. School of Biology) ;
Dias, Deodália (Universidade de Lisboa. Faculdade de Ciências) ;
Dovč, Peter (University of Ljubljana. Department of Animal Science) ;
Uimari, Pekka (University of Helsinki. Department of Agricultural Sciences) ;
Iacolina, Laura (University of Sassari. Department of Science for Nature and Environmental Resources) ;
Scandura, Massimo (University of Sassari. Department of Science for Nature and Environmental Resources) ;
Groenen, Martien A. M. (Wageningen University. Animal Breeding and Genomics) ;
Huang, Lusheng (Jiangxi Agricultural University. National Key Laboratory for Pig Genetic Improvement and Production Technology) ;
Megens, Hendrik-Jan (Wageningen University. Animal Breeding and Genomics)
Background: pigs were domesticated independently in Eastern and Western Eurasia early during the agricultural revolution, and have since been transported and traded across the globe. Here, we present a worldwide survey on 60K genome-wide single nucleotide polymorphism (SNP) data for 2093 pigs, including 1839 domestic pigs representing 122 local and commercial breeds, 215 wild boars, and 39 out-group suids, from Asia, Europe, America, Oceania and Africa. [...]
2017 - 10.1186/s12711-017-0345-y
Genetics, selection, evolution, Vol. 49 (2017) , art. 71
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