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Resultats globals: 35 registres trobats en 0.02 segons.
Articles, 28 registres trobats
Documents de recerca, 3 registres trobats
Materials acadèmics, 4 registres trobats
Articles 28 registres trobats  1 - 10següentfinal  anar al registre:
1.
20 p, 1.1 MB Comparative genomics of the DNA damage-inducible network in the Patescibacteria / Sánchez-Osuna, Miquel (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Barbé García, Jordi (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Erill, Ivan (University of Maryland Baltimore County. Department of Biological Sciences)
Metagenomics provide unprecedented insights into the genetic diversity of uncultivated bacteria inhabiting natural environments. Recent surveys have uncovered a major radiation of candidate phyla encompassing the Patescibacteria superphylum. [...]
2017 - 10.1111/1462-2920.13826
Environmental Microbiology, Vol. 19, issue 9 (Sep. 2017) , p. 3465-3474  
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2.
10 p, 1.4 MB Assessment of transfer methods for comparative genomics of regulatory networks in Bacteria / Kılıç, Sefa (University of Maryland Baltimore County. Department of Biological Sciences) ; Erill, Ivan (University of Maryland Baltimore County. Department of Biological Sciences)
Background: Comparative genomics can leverage the vast amount of available genomic sequences to reconstruct and analyze transcriptional regulatory networks in Bacteria, but the efficacy of this approach hinges on the ability to transfer regulatory network information from reference species to the genomes under analysis. [...]
2016 - 10.1186/s12859-016-1113-7
BMC bioinformatics, Vol. 17, Suppl. 8 (August 2016) , art. 277  
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3.
10 p, 992.7 KB From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF / Kılıç, Sefa (University of Maryland Baltimore County. Department of Biological Sciences) ; Sagitova, Dinara M. (University of Maryland Baltimore County. Department of Biological Sciences) ; Wolfish, Shoshannah (University of Maryland School ofMedicine) ; Bely, Benoit (European Bioinformatics Institute) ; Courtot, Mélanie (European Bioinformatics Institute) ; Ciufo, Stacy (National Institutes of Health (Bethesda, Estats Units d'Amèrica)) ; Tatusova, Tatiana (National Institutes of Health (Bethesda, Estats Units d'Amèrica)) ; O'Donovan Claire (European Bioinformatics Institute) ; Chibucos, Marcus C. (University of Maryland School of Medicine. Department of Microbiology and Immunology) ; Martin, Maria J. (European Bioinformatics Institute) ; Erill, Ivan (University of Maryland Baltimore County. Department of Biological Sciences)
Domain-specific databases are essential resources for the biomedical community, leveraging expert knowledge to curate published literature and provide access to referenced data and knowledge. The limited scope of these databases, however, poses important challenges on their infrastructure, visibility, funding and usefulness to the broader scientific community. [...]
2016 - 10.1093/database/baw055
Database, Vol. 2016 (April 2016) , art. baw055  
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4.
5 p, 395.9 KB Characterization of the SOS meta-regulon in the human gut microbiome / Cornish, Joseph P. (University of Maryland Baltimore County. Department of Biological Sciences) ; Sanchez-Alberola, Neus (University of Maryland Baltimore County. Department of Biological Sciences) ; O'Neill, Patrik K. (University of Maryland Baltimore County. Department of Biological Sciences) ; O'Keefe, Ronald (University of Maryland Baltimore County. Department of Biological Sciences) ; Gheba, Jameel (University of Maryland Baltimore County. Department of Biological Sciences) ; Erill, Ivan (University of Maryland Baltimore County. Department of Biological Sciences)
Motivation: Data from metagenomics projects remain largely untapped for the analysis of transcriptional regulatory networks. Here, we provide proof-of-concept that metagenomic data can be effectively leveraged to analyze regulatory networks by characterizing the SOS meta-regulon in the human gut microbiome. [...]
2014 - 10.1093/bioinformatics/btt753
Bioinformatics, Vol. 30, Issue 9 (May 2014) , p. 1193-1197  
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5.
5 p, 4.0 MB CollecTF : a database of experimentally-validated transcription factor-binding sites in Bacteria / Kılıç, Sefa (University of Maryland Baltimore County. Department of Biological Sciences) ; White, Elliot R. (University of Maryland Baltimore County. Department of Biological Sciences) ; Sagitova, Dinara M. (University of Maryland Baltimore County. Department of Biological Sciences) ; Cornish, Joseph P. (University of Maryland Baltimore County. Department of Biological Sciences) ; Erill, Ivan (University of Maryland Baltimore County. Department of Biological Sciences)
The influx of high-throughput data and the need for complex models to describe the interaction of prokaryotic transcription factors (TF) with their target sites pose new challenges for TF-binding site databases. [...]
2014 - 10.1093/nar/gkt1123
Nucleic Acids Research, Vol. 42, Issue D1 (January 2014) , p. D156-D160  
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6.
11 p, 865.3 KB scnRCA : a novel method to detect consistent patterns of translational selection in mutationally-biased genomes / O'Neill, Patrick K. (University of Maryland. Department of Biological Sciences) ; Or, Mindy (University of Maryland. Department of Biological Sciences) ; Erill, Ivan (University of Maryland Baltimore County. Department of Biological Sciences)
Codon usage bias (CUB) results from the complex interplay between translational selection and mutational biases. Current methods for CUB analysis apply heuristics to integrate both components, limiting the depth and scope of CUB analysis as a technique to probe into the evolution and optimization of protein-coding genes. [...]
2013 - 10.1371/journal.pone.0076177
PloS one, Vol. 8, Issue 10 (October 2013) , art. e76177  
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7.
7 p, 1.0 MB BioWord: a sequence manipulation suite for Microsoft Word / Anzaldi, Laura J. (University of Maryland Baltimore County. Department of Biological Sciences) ; Muñoz-Fernández, Daniel (Universitat Autònoma de Barcelona. Departament de Ciències de la Computació) ; Erill, Ivan (Universitat Autònoma de Barcelona. Departament de Ciències de la Computació)
Background: The ability to manipulate, edit and process DNA and protein sequences has rapidly become a necessary skill for practicing biologists across a wide swath of disciplines. In spite of this, most everyday sequence manipulation tools are distributed across several programs and web servers, sometimes requiring installation and typically involving frequent switching between applications. [...]
2012 - 10.1186/1471-2105-13-124
BMC bioinformatics, Vol. 13 (June 2012) , art. 124  
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8.
6 p, 470.1 KB The SOS response controls integron recombination / Guerin, Émilie (Université de Limoges. Faculté de Medicine) ; Cambray, Guillaume (Institut Pasteur) ; Sánchez Alberola, Neus (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Campoy Sánchez, Susana (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Erill, Ivan (Centro Nacional de Microelectrónica (Espanya)) ; Da Re, Sandra (Université de Limoges. Faculté de Médecine) ; González Zorn, Bruno (Universidad Complutense de Madrid. Departamento de Sanidad Animal) ; Barbé García, Jordi (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Ploy, Marie-Cécile (Université de Limoges. Faculté de Médecine) ; Mazel, Didier (Institut Pasteur)
Integrons are found in the genome of hundreds of environmental bacteria but are mainly known for their role in the capture and spread of antibiotic resistance determinants among Gram-negative pathogens. [...]
2009 - 10.1126/science.1172914
Science, Vol. 324, issue 5930 (May 2009) , p. 1034  
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9.
38 p, 1.3 MB Aeons of distress : an evolutionary perspective on the bacterial SOS response / Erill, Ivan (Centro Nacional de Microelectrónica (Espanya)) ; Campoy Sánchez, Susana (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ; Barbé García, Jordi (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
The SOS response of bacteria is a global regulatory network targeted at addressing DNA damage. Governed by the products of the lexA and recA genes, it co-ordinates a comprehensive response against DNA lesions and its description in Escherichia coli has stood for years as a textbook paradigm of stress-response systems in bacteria. [...]
2007 - doi: 10.1111/j.1574-6976.2007.00082.x
FEMS Microbiology Reviews, Vol. 31, issue 6 (Nov. 2007) , p. 637-656  
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10.
12 p, 319.2 KB Relative Codon Adaptation : A Generic Codon Bias Index for Prediction of Gene Expression / Fox, Jesse M. (University of Maryland Baltimore County. Department of Biological Sciences) ; Erill, Ivan (University of Maryland Baltimore County. Department of Biological Sciences)
The development of codon bias indices (CBIs) remains an active field of research due to their myriad applications in computational biology. Recently, the relative codon usage bias (RCBS) was introduced as a novel CBI able to estimate codon bias without using a reference set. [...]
2010 - 10.1093/dnares/dsq012
DNA Research, Vol. 17, Issue 3 (June 2010) , p. 185-196  
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Articles : 28 registres trobats   1 - 10següentfinal  anar al registre:
Documents de recerca 3 registres trobats  
1.
193 p, 16.0 MB Origen y evolución de los genes que confieren resistencia clínica a sulfamidas y a trimetoprim / Sánchez Osuna, Miquel ; Barbé García, Jordi, dir. ; Llagostera Casas, Montserrat, dir. ; Erill, Ivan, dir.
La resistència als compostos antibacterians és un greu problema a la sanitat moderna, tant humana com animal. Està ampliament demostrat que la resistència als antibiòtics va sorgir fa milions d'anys a bacteris productors d'aquests compostos o als seus competidors. [...]
La resistencia a los compuestos antibacterianos es un grave problema en la sanidad moderna, tanto humana como animal. Está ampliamente demostrado que la resistencia a los antibióticos surgió hace millones de años en bacterias productoras de estos compuestos o en sus competidoras. [...]
Antibacterial resistance is a pressing problem in human and animal modern healthcare. It is widely accepted that antibiotic resistance originated million years ago in either the microbes that naturally produce the antibiotics or their competitors. [...]
2020  
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2.
92 p, 1003.1 KB Bioinformàtica : add-in d'anàlisi i manipulació de seqüències per Microsoft Word / Muñoz Fernández, Daniel ; Erill, Ivan ; Universitat Autònoma de Barcelona. Escola Tècnica Superior d'Enginyeria ; Universitat Autònoma de Barcelona. Escola d'Enginyeria
L'objectiu del projecte consisteix en el desenvolupament d'un add-in d'anàlisi i manipulació de seqüències, senzill i de fàcil ús, integrable en l'entorn Microsoft Word per permetre la manipulació de seqüències genètiques directament des de Microsoft Word, estalviant temps, en evitar haver de canviar constantment de programa i format per treballar amb elles; i, també, complicacions a l'usuari final. [...]
El objetivo del proyecto consiste en el desarrollo de un add-in de análisis y manipulación de secuencias genéticas directamente desde Microsoft Word, ahorrando tiempo al evitar tener que cambiar constantemente de programa y formato para trabajar con ellas y, también, complicaciones al usuario final. [...]
The objective of this project is the development of an add-in for sequence analysis and manipulation, simple and easy to use and integrable within the Microsoft Word, saving time, by avoiding to constant program and format changes, and other nuisances to the final user. [...]
2008  
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3.
13 p, 495.6 KB High-speed polymerase chain reaction in CMOS-compatible chips / Erill, Ivan ; Aguiló Llobet, Jordi, dir. (Universitat Autònoma de Barcelona. Departament de Microelectrònica i Sistemes Electrònics) ; Barbé García, Jordi, dir. (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
En la última década del siglo XX, el campo de los microsistemas para análisis total (µ-TAS) y, más concretamente, el de los DNA-chips ha adquirido una importancia preponderante en el ámbito de los microsistemas. [...]
In the last decade of the twentieth century, the fields of µ-TAS and, more specifically, DNA-chips have acquired increasing importance in the microsystems arena. The main reason for this surge of interest lies in the advantages these new devices seek to bring forth: faster, cheaper and completely automated analyses, and also in the outbreak of novel analytical techniques (e. [...]
Bellaterra : Universitat Autònoma de Barcelona, 2003
35 documents
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Materials acadèmics 4 registres trobats  
1.
1 p, 44.5 KB Informàtica aplicada als estudis d'humanitats [23261] / Erill, Ivan ; Universitat Autònoma de Barcelona. Facultat de Filosofia i Lletres
2001-02
Llicenciat en Humanitats [78]  
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2.
1 p, 593.4 KB Informàtica aplicada als estudis d'humanitats [23261] / Erill, Ivan ; Universitat Autònoma de Barcelona. Facultat de Filosofia i Lletres
2002-03
Llicenciat en Humanitats [78]  
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3.
2 p, 40.5 KB Bases de dades i xarxes de comunicació [27969] / Erill, Ivan ; Soler Ruiz, Vicenç ; Universitat Autònoma de Barcelona. Facultat de Ciències
2003-04
Diplomat en Estadística [461]  
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4.
2 p, 148.2 KB Bases de dades i xarxes de comunicació [27969] / Erill, Ivan ; Soler Ruiz, Vicenç ; Universitat Autònoma de Barcelona. Facultat de Ciències
2004-05
Diplomat en Estadística [461]  
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