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Results overview: Found 3 records in 0.02 seconds.
Articles, 2 records found
Contributions to meetings and congresses, 1 records found
Articles 2 records found  
1.
13 p, 995.3 KB Boosting the FM-index on the GPU : effective techniques to mitigate random memory access / Chacón, Alejandro (Universitat Autònoma de Barcelona) ; Marco-Sola, Santiago (Centre Nacional d'Anàlisi Genòmica) ; Espinosa, Antonio (Universitat Autònoma de Barcelona) ; Ribeca, Paolo (The Pirbright Institute (Regne Unit)) ; Moure, Juan C (Universitat Autònoma de Barcelona)
The recent advent of high-throughput sequencing machines producing big amounts of short reads has boosted the interest in efficient string searching techniques. As of today, many mainstream sequence alignment software tools rely on a special data structure, called the FM-index, which allows for fast exact searches in large genomic references. [...]
2015 - 10.1109/TCBB.2014.2377716
IEEE/ACM Transactions on computational biology and bioinformatics, Vol. 12, No. 5 (Sep.-Oct. 2015)  
Detailed record -
2.
13 p, 370.1 KB GPU-Based Optimization of a Free-Viewpoint Video System / Orman, Neal (Worcester Polytechnic Institute (Worcester, Estats Units d'Amèrica). Computer Science Department) ; Kim, Hansung (Advanced Telecommunications Research Institute International (Kyoto Japó). Knowledge Science Lab) ; Sakamoto, Ryuuki (Advanced Telecommunications Research Institute International (Kyoto Japó). Knowledge Science Lab) ; Toriyama, Tomoji (Advanced Telecommunications Research Institute International (Kyoto Japó). Knowledge Science Lab) ; Kogure, Kiyoshi (Advanced Telecommunications Research Institute International (Kyoto Japó). Knowledge Science Lab) ; Lindeman, Robert (Worcester Polytechnic Institute (Worcester, Estats Units d'Amèrica). Computer Science Department)
We present a method for optimizing the reconstruction and rendering of 3D objects from multiple images by utilizing the latest features of consumer-level graphics hardware based on shader model 4. 0. [...]
2008 - 10.5565/rev/elcvia.180
ELCVIA : Electronic Letters on Computer Vision and Image Analysis, V. 7 n. 2 (2008) p. 120-133  
Detailed record - Creative Commons

Contributions to meetings and congresses 1 records found  
1.
9 p, 645.7 KB FM-index on GPU : a cooperative scheme to reduce memory footprint / Chacón, Alejandro (Universitat Autònoma de Barcelona) ; Marco-Sola, Santiago (Centre Nacional d'Anàlisi Genòmica)
The FM-index is a data structure which is seeing more and more pervasive use, in particular in the field of highthroughput bioinformatics. Algorithms based on it show a pseudo-random memory access pattern. [...]
2014 - 10.1109/ISPA.2014.10
ISPA : IEEE International Symposium on Parallel and Distributed Processing with Applications. Milà, Itàlia, 12è : 2014  
Detailed record -

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