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Articles, 4 records found
Articles 4 records found  
1.
12 p, 2.1 MB Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies / Jung, Sook (Washington State University. Department of Horticulture and Landscape Architecture) ; Cestaro, Alessandro (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Troggio, Michela (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Main, Dorrie (Washington State University. Department of Horticulture and Landscape Architecture) ; Zheng, Ping (Washington State University. Department of Horticulture and Landscape Architecture) ; Cho, Ilhyung (Saginaw Valley State University. Department of Computer Science and Information Systems) ; Folta, Kevin M. (University of Florida. Horticultural Sciences Department) ; Sosinski, Bryon (North Carolina State University. Department of Horticultural Science) ; Abbott, Albert G. (Clemson University. Department of Genetics and Biochemistry) ; Celton, Jean-Marc (Institut National de la Recherche Agronomique (França)) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Shulaev, Vladimir (University of North Texas. Department of Biological Sciences) ; Verde, Ignazio (Centro di Ricerca per la Frutticoltura) ; Morgante, Michele (Istituto di Genomica Applicata (Udine, Itàlia)) ; Rokhsar, Daniel (United States. Department of Energy. Joint Genome Institute) ; Velasco, Riccardo (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige) ; Sargent, Daniel James (Fondazione Edmund Mach. Istituto agrario di San Michele all'Adige)
Background: Rosaceae include numerous economically important and morphologically diverse species. Comparative mapping between the member species in Rosaceae have indicated some level of synteny. Recently the whole genome of three crop species, peach, apple and strawberry, which belong to different genera of the Rosaceae family, have been sequenced, allowing in-depth comparison of these genomes. [...]
2012 - 10.1186/1471-2164-13-129
BMC genomics, Vol. 13 (April 2012) , art. 129  
Detailed record - Creative Commons
2.
17 p, 1.8 MB Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes / Jung, Sook (Clemson University. Department of Genetics and Biochemistry) ; Main, Dorrie (Washington State University. Department of Horticulture and Landscape Architecture) ; Staton, Margaret (Clemson University. Department of Genetics and Biochemistry) ; Cho, Ilhyung (Department of Computer Science. Saginaw Valley State University) ; Zhebentyayeva, Tatyana (Clemson University. Department of Genetics and Biochemistry) ; Arús i Gorina, Pere (Institut de Recerca i Tecnologia Agroalimentàries) ; Abbott, Albert G. (Clemson University. Department of Genetics and Biochemistry)
Background: Due to the lack of availability of large genomic sequences for peach or other Prunus species, the degree of synteny conservation between the Prunus species and Arabidopsis has not been systematically assessed. [...]
2006 - 10.1186/1471-2164-7-81
BMC genomics, Vol. 7 (April 2006) , art. 81  
Detailed record - Creative Commons
3.
13 p, 1.2 MB Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm / Verde, Ignazio (Centro di Ricerca per la Frutticoltura (Roma)) ; Bassil, Nahla (United States Department of Agriculture. National Clonal Germplasm Repository) ; Scalabrin, Simone (Istituto di Genomica Applicata) ; Gilmore, Barbara (United States Department of Agriculture. National Clonal Germplasm Repository) ; Lawley, Cynthia T. (Illumina Inc. (California)) ; Gasic, Ksenija (Clemson University. School of Agricultural, Forest and Environmental Sciences) ; Micheletti, Diego (Centre de Recerca en Agrigenòmica) ; Rosyara, Umesh R. (Michigan State University. Department of Horticulture) ; Cattonaro, Federica (Istituto di Genomica Applicata) ; Vendramin, Elisa (Centro di Ricerca per la Frutticoltura (Roma)) ; Main, Dorrie (Washington State University. Department of Horticulture & Landscape Architecture) ; Aramini, Valeria (Centro di Ricerca per la Frutticoltura (Roma)) ; Blas, Andrea L. (Centre de Recerca en Agrigenòmica) ; Mockler, Todd C. (The Donald Danforth Plant Science Center) ; Bryant, Douglas W. (The Donald Danforth Plant Science Center) ; Wilhelm, Larry (Oregon Health Sciences University) ; Troggio, Michela (The Istituto Agrario di San Michele all'Adige) ; Sosinski, Bryon (North Carolina State University. Department of Horticultural Science) ; Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Iezzoni, Amy (Michigan State University. Department of Horticulture) ; Morgante, Michele (Istituto di Genomica Applicata) ; Peace, Cameron (Washington State University. Department of Horticulture & Landscape Architecture)
Although a large number of single nucleotide polymorphism (SNP) markers covering the entire genome are needed to enable molecular breeding efforts such as genome wide association studies, fine mapping, genomic selection and marker-assisted selection in peach [Prunus persica (L. [...]
The almost 7,000 SNPs verified as polymorphic through extensive empirical evaluation represent an excellent source of markers for future studies in genetic relatedness, genetic mapping, and dissecting the genetic architecture of complex agricultural traits. [...]
2012 - 10.1371/journal.pone.0035668
PloS one, Vol. 7, issue 4 (April 2012) , e35668  
Detailed record - Creative Commons
4.
30 p, 3.7 MB Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa / Bassil, Nahla (United States Department of Agriculture. National Clonal Germplasm Repository) ; Davis, Thomas M. (University of New Hampshire) ; Zhang, Hailong (University of New Hampshire) ; Ficklin, Stephen (Washington State University) ; Mittmann, Mike (Affymetrix) ; Webster, Teresa (Affymetrix) ; Mahoney, Lise (University of New Hampshire) ; Wood, David (University of New Hampshire) ; Alperin, Elisabeth S. (United States Department of Agriculture. National Clonal Germplasm Repository) ; Rosyara, Umesh R. (Michigan State University) ; Koehorst-vanc Putten, Herma (Wageningen UR. Plant Breeding) ; Monfort, Amparo (Centre de Recerca en Agrigenòmica) ; Sargent, Daniel J. (Fondazione Edmund Mach, Centro di Ricerca e Innovazione) ; Amaya, Iraida (Instituto de Investigación y Formación Agraria y Pesquera) ; Denoyes, Beatrice (Institut national de la recherche agronomique (França). Biologie du Fruit et Pathologie) ; Bianco, Luca (Fondazione Edmund Mach, Centro di Ricerca e Innovazione) ; Van Dijk, Thijs (Wageningen UR. Plant Breeding) ; Pirani, Ali (Affymetrix) ; Iezzoni, Amy (Michigan State University) ; Main, Dorrie (Washington State University) ; Peace, Cameron (Washington State University) ; Yang, Yilong (University of New Hampshire) ; Vance Whitaker, Vance (University of Florida) ; Verma, Sujeet · (University of Florida) ; Bellon, Laurent (Affymetrix) ; Brew, Fiona (Affymetrix) ; Herrera, Raul (Universidad de Talca. Instituto Ciencias Biologicas) ; Van de Weg, Eric (Wageningen UR. Plant Breeding)
Background: A high-throughput genotyping platform is needed to enable marker-assisted breeding in the allo-octoploid cultivated strawberry Fragaria × ananassa. Short-read sequences from one diploid and 19 octoploid accessions were aligned to the diploid Fragaria vesca 'Hawaii 4' reference genome to identify single nucleotide polymorphisms (SNPs) and indels for incorporation into a 90 K Affymetrix® Axiom® array. [...]
2015 - 10.1186/s12864-015-1310-1
BMC genomics, Vol. 16 (2015) art. 155  
Detailed record - Creative Commons

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1 Main, David C. J.
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