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18 p, 5.3 MB |
Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses
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Kapun, Martin (The European Drosophila Population Genomics Consortium) ;
Barrón Aduriz, Maite Garazi (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Staubach, Fabian (University of Freiburg. Department of Evolutionary Biology and Ecology) ;
Obbard, Darren J. (University of Edinburgh. Institute of Evolutionary Biology) ;
Wiberg, R. Axel W. (University of Basel. Department of Environmental Sciences) ;
Vieira, Jorge (Instituto de Investigação e Inovação em Saúde (Porto, Portugal)) ;
Goubert, Clément (Cornell University. Department of Molecular Biology and Genetics) ;
Rota-Stabelli, Omar (The European Drosophila Population Genomics Consortium) ;
Kankare, Maaria (University of Jyväskylä. Department of Biological and Environmental Science) ;
Bogaerts-Márquez, María (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Haudry, Annabelle (Université Lyon 1. Laboratoire de Biométrie et Biologie Evolutive) ;
Waidele, Lena (University of Freiburg. Department of Evolutionary Biology and Ecology) ;
Kozeretska, Iryna (The European Drosophila Population Genomics Consortium) ;
Pasyukova, Elena G. (The European Drosophila Population Genomics Consortium) ;
Loeschcke, Volker (Aarhus University. Department of Bioscience-Genetics, Ecology and Evolution) ;
Pascual, Marta (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Vieira, Cristina P. (The European Drosophila Population Genomics Consortium) ;
Serga, Svitlana (Taras Shevchenko National University of Kyiv. General and Medical Genetics Department) ;
Montchamp-Moreau, Catherine (The European Drosophila Population Genomics Consortium) ;
Abbott, Jessica (Lund University. Department of Biology) ;
Gibert, Patricia (Université Lyon 1. Laboratoire de Biométrie et Biologie Evolutive) ;
Porcelli, Damiano (The European Drosophila Population Genomics Consortium) ;
Posnien, Nico (Universität Göttingen. Johann-Friedrich-Blumenbach-Institut für Zoologie und Anthropologie) ;
Sánchez-Gracia, Alejandro (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Grath, Sonja (The European Drosophila Population Genomics Consortium) ;
Sucena, Élio (Universidade de Lisboa. Departamento de Biologia Animal) ;
Bergland, Alan O. (University of Virginia. Department of Biology) ;
García Guerreiro, María Pilar (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Onder, Banu Sebnem (Hacettepe University. Department of Biology) ;
Argyridou, Eliza (The European Drosophila Population Genomics Consortium) ;
Guio, Lain (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Schou, Mads Fristrup (Lund University. Department of Biology) ;
Deplancke, Bart (The European Drosophila Population Genomics Consortium) ;
Vieira, Cristina (Université Lyon 1. Laboratoire de Biométrie et Biologie Evolutive) ;
Ritchie, Michael G. (University of St. Andrews. Centre for Biological Diversity) ;
Zwaan, Bas J. (Wageningen University. Department of Plant Sciences) ;
Tauber, Eran (University of Haifa. Department of Evolutionary and Environmental Biology) ;
Orengo, Dorcas J. (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Puerma, Eva (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Aguadé, Montserrat (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Schmidt, Paul (University of Pennsylvania. Department of Biology) ;
Parsch, John (Ludwig-Maximilians-Universität München. Division of Evolutionary Biology) ;
Betancourt, Andrea J. (University of Liverpool. Department of Evolution, Ecology, and Behaviour) ;
Flatt, Thomas (University of Fribourg. Department of Biology) ;
González, Josefa (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Genetic variation is the fuel of evolution, with standing genetic variation especially important for short-term evolution and local adaptation. To date, studies of spatiotemporal patterns of genetic variation in natural populations have been challenging, as comprehensive sampling is logistically difficult, and sequencing of entire populations costly. [...]
2020 -  10.1093/molbev/msaa120
Molecular biology and evolution, Vol. 37, issue 9 (Sep. 2020) , p. 2661-2678
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11 p, 1.7 MB |
Dynamic Interactions Between the Genome and an Endogenous Retrovirus : Tirant in Drosophila simulans Wild-Type Strains
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Fablet, Marie (Université de Lyon. Laboratoire de Biométrie et Biologie Evolutive) ;
Jacquet, Angelo (Université de Lyon. Laboratoire de Biométrie et Biologie Evolutive) ;
Rebollo, Rita (Université de Lyon. INSA-Lyon, INRA) ;
Haudry, Annabelle (Université de Lyon. Laboratoire de Biométrie et Biologie Evolutive) ;
Rey, Carine (Université de Lyon. Laboratoire de Biologie et Modélisation de la Cellule) ;
Salces-Ortiz, Judit (Université de Lyon. Laboratoire de Biométrie et Biologie Evolutive) ;
Bajad, Prajakta (Medical University of Vienna. Center for Anatomy and Cell Biology, Division of Cell- and Developmental Biology) ;
Burlet, Nelly (Université de Lyon. Laboratoire de Biométrie et Biologie Evolutive) ;
Jantsch, Michael F. (Medical University of Vienna. Center for Anatomy and Cell Biology, Division of Cell- and Developmental Biology) ;
García Guerreiro, María Pilar (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Vieira, Cristina (Université de Lyon. Laboratoire de Biométrie et Biologie Evolutive)
All genomes contain repeated sequences that are known as transposable elements (TEs). Among these are endogenous retroviruses (ERVs), which are sequences similar to retroviruses and are transmitted across generations from parent to progeny. [...]
2019 - 10.1534/g3.118.200789
G3, Vol. 9, Num. 3 (March 2019) , p. 855-865
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21 p, 2.0 MB |
Transposable element misregulation is linked to the divergence between parental piRNA pathways in Drosophila hybrids
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Romero-Soriano, Valèria (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Modolo, Laurent (Université Claude Bernard. Laboratoire de Biométrie et Biologie Evolutive) ;
Lopez-Maestre, Hélène (Université Claude Bernard. Laboratoire de Biométrie et Biologie Evolutive) ;
Mugat, Bruno (Université de Montpellier. Institut de Génétique Humaine) ;
Pessia, Eugénie (Université Claude Bernard. Laboratoire de Biométrie et Biologie Evolutive) ;
Chambeyron, Séverine (Université de Montpellier. Institut de Génétique Humaine) ;
Vieira, Cristina (Université Claude Bernard. Laboratoire de Biométrie et Biologie Evolutive) ;
García Guerreiro, María Pilar (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
Interspecific hybridization is a genomic stress condition that leads to the activation of transposable elements (TEs) in both animals and plants. In hybrids between Drosophila buzzatii and Drosophila koepferae, mobilization of at least 28 TEs has been described. [...]
2017 - 10.1093/gbe/evx091
Genome biology and evolution, Vol. 9, Issue 6 (June 2017) , p. 1450-1470
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6 p, 300.2 KB |
Drosophila females undergo genome expansion after interspecific hybridization
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Romero-Soriano, Valèria (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Burlet, Nelly (Université de Lyon. Laboratoire de Biométrie et Biologie evolutive) ;
Vela, Doris (Pontificia Universidad Católica del Ecuador. Laboratorio de Genética Evolutiva.) ;
Fontdevila, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Vieira, Cristina (Université de Lyon. Laboratoire de Biométrie et Biologie evolutive) ;
García Guerreiro, María Pilar (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
Genome size (or C-value) can present a wide range of values among eukaryotes. This variation has been attributed to differences in the amplification and deletion of different noncoding repetitive sequences, particularly transposable elements (TEs). [...]
2016 - 10.1093/gbe/evw024
Genome biology and evolution, Vol.8, Issue 3 (March 2016) , p. 556-561
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