PDA v.2 : improving the exploration and estimation of nucleotide polymorphism in large datasets of heterogeneous DNA
Casillas Viladerrams, Sònia (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)

Fecha:	2006
Resumen:	Pipeline Diversity Analysis (PDA) is an open-source, web-based tool that allows the exploration of polymorphism in large datasets of heterogeneous DNA sequences, and can be used to create secondary polymorphism databases for different taxonomic groups, such as the Drosophila Polymorphism Database (DPDB). A new version of the pipeline presented here, PDA v. 2, incorporates substantial improvements, including new methods for data mining and grouping sequences, new criteria for data quality assessment and a better user interface. PDA is a powerful tool to obtain and synthesize existing empirical evidence on genetic diversity in any species or species group. PDA v. 2 is available on the web at http://pda. uab. es/.
Ayudas:	Ministerio de Ciencia e Innovación BES2013/0416
Nota:	Altres ajuts: Marie Curie Fellowship (HPMT-GH-01-00285-13)
Derechos:	Tots els drets reservats.
Lengua:	Anglès
Documento:	Article ; recerca ; Versió publicada
Publicado en:	Nucleic acids research, Vol. 34 (july 2006) , p. W632-W634, ISSN 1362-4962

DOI: 10.1093/nar/gkl080
PMID: 16845088

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