Results overview: Found 5 records in 0.02 seconds.
Articles, 4 records found
Research literature, 1 records found
Articles 4 records found  
1.
18 p, 4.6 MB Genomic insights into the Montseny brook newt (Calotriton arnoldi), a Critically Endangered glacial relict / Talavera, Adrián (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Palmada-Flores, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Burriel-Carranza, Bernat (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Valbuena Ureña, Emilio (Diputació de Barcelona. Servei de Gestió de Parcs Naturals) ; Mochales-Riaño, Gabriel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Adams, Dean C. (Iowa State University. Department of Ecology, Evolution, and Organismal Biology) ; Tejero-Cicuéndez, Héctor (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Soler Membrives, Anna (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ; Amat Orriols, Fèlix (Museo de Ciencias Naturales de Granollers) ; Guinart, Daniel (Diputació de Barcelona. Servei de Gestió de Parcs Naturals) ; Carbonell, Francesc (Centre de fauna salvatge de Torreferrussa) ; Obón, Elena (Centre de Fauna Salvatge de Torreferrussa (Santa Perpètua de la Mogoda, Catalunya)) ; Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ; Carranza, Salvador (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
The Montseny brook newt (Calotriton arnoldi), considered the most endangered amphibian in Europe, is a relict salamandrid species endemic to a small massif located in northeastern Spain. Although conservation efforts should always be guided by genomic studies, those are yet scarce among urodeles, hampered by the extreme sizes of their genomes. [...]
2024 - 10.1016/j.isci.2023.108665
iScience, Vol. 27, Issue 1 (January 2024) , art. 108665  
2.
11 p, 1.1 MB Y chromosome sequence and epigenomic reconstruction across human populations / Esteller-Cucala, Paula (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Palmada-Flores, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Kuderna, Lukas F. K. (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Fontsere, Claudia (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Serres-Armero, Aitor (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Dabad, Marc (Centre de Regulació Genòmica) ; Torralvo, María (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Faella, Armida (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Ferrández-Peral, Luis (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Llovera, Laia (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Fornas, Òscar (Centre de Regulació Genòmica) ; Julià, Eva (Centre de Regulació Genòmica) ; Ramírez, Erika (Centre de Regulació Genòmica) ; González, Irene (Centre de Regulació Genòmica) ; Hecht, Jochen (Centre de Regulació Genòmica) ; Lizano, Esther (Institut Català de Paleontologia Miquel Crusafont) ; Juan, David (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont)
Recent advances in long-read sequencing technologies have allowed the generation and curation of more complete genome assemblies, enabling the analysis of traditionally neglected chromosomes, such as the human Y chromosome (chrY). [...]
2023 - 10.1038/s42003-023-05004-9
Communications Biology, Vol. 6 (June 2023) , art. 623  
3.
12 p, 1.3 MB Real-time genomics for One Health / Urban, Lara (Helmholtz Zentrum Muenchen) ; Perlas Puente, Albert (Helmholtz Zentrum Muenchen) ; Francino, Olga (Nano1Health, S.L.) ; Martí-Carreras, Joan (Nano1Health, S.L.) ; Muga, Brenda (University of Otago. Department of Anatomy) ; Mwangi, Jenniffer W. (Machakos University. Biological Department) ; Okalebo, Laura Boykin (BioTeam, Inc. (USA)) ; Stanton, Jo-Ann (University of Otago. Department of Anatomy) ; Black, Amanda (Lincoln University. Bioprotection Aotearoa) ; Waipara, Nick (Plant and Food Research (New Zealand)) ; Fontsere, Claudia (University of Copenhagen. The Globe Institute. Center for Evolutionary Hologenomics) ; Eccles, David (Malaghan Institute of Medical Research. Hugh Green Cytometry Centre) ; Urel, Harika (Helmholtz Zentrum Muenchen) ; Reska, Tim (Helmholtz Zentrum Muenchen) ; Morales, Hernan (University of Copenhagen. The Globe Institute. Center for Evolutionary Hologenomics) ; Palmada-Flores, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ; Watsa, Mrinalini (San Diego Zoo Wildlife Alliance) ; Libke, Zane (Instituto Nacional de Biodiversidad (Ecuador)) ; Erkenswick, Gideon (Field Projects International (USA)) ; van Oosterhout, Cock (University of East Anglia)
The ongoing degradation of natural systems and other environmental changes has put our society at a crossroad with respect to our future relationship with our planet. While the concept of One Health describes how human health is inextricably linked with environmental health, many of these complex interdependencies are still not well-understood. [...]
2023 - 10.15252/msb.202311686
Molecular systems biology, Vol. 19, Issue 6 (June 2023) , art. e11686  
4.
7 p, 1.5 MB A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta) / Palmada-Flores, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Orkin, Joseph (Université de Montréal. Département d'anthropologie) ; Haase, Bettina (The Rockefeller University. Vertebrate Genome Lab (USA)) ; Mountcastle, Jacquelyn (The Rockefeller University. Vertebrate Genome Lab (USA)) ; Bertelsen, Mads (University of Copenhagen. Department of Veterinary and Animal Sciences) ; Fedrigo, Olivier (The Rockefeller University. Vertebrate Genome Lab (USA)) ; Kuderna, Lukas (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Jarvis, Erich (The Rockefeller University. Vertebrate Genome Lab (USA)) ; Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont)
Background: The ring-tailed lemur (Lemur catta) is a charismatic strepsirrhine primate endemic to Madagascar. These lemurs are of particular interest, given their status as a flagship species and widespread publicity in the popular media. [...]
2022 - 10.1093/gigascience/giac026
GigaScience, Vol. 11, Num. 1 (April 2022) , art. giac026  

Research literature 1 records found  
1.
29 p, 2.9 MB Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy / Larivière, Delphine (Pennsylvania State University) ; Abueg, Linelle Ann L. (The Rockefeller University) ; Brajuka, Nadolina (The Rockefeller University) ; Gallardo, Cristobal (Albert-Ludwigs-University Freiburg) ; Grüning, Björn (Albert-Ludwigs-University Freiburg) ; Ko, Byung June (Seoul National University) ; Ostrovsky, Alexander (Johns Hopkins University) ; Palmada-Flores, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ; Pickett, Brandon (National Institutes of Health. National Human Genome Research Institute (USA)) ; Rabbani, Keon (University of Southern California) ; Balacco, Jennifer (The Rockefeller University) ; Chaisson, Mark (University of Southern California) ; Cheng, Haoyu (Harvard Medical School) ; Collins, Joanna (Wellcome Sanger Institute (Regne Unit)) ; Denisova, Alexandra (Lomonosov Moscow State University) ; Fedrigo, Olivier (The Rockefeller University) ; Gallo, Guido (Università degli Studi di Milano) ; Giani, Alice Maria (Weill Cornell Medical College (USA)) ; Gooder, Grenville MacDonald (The Rockefeller University) ; Jain, Nivesh (The Rockefeller University) ; Johnson, Cassidy (The Rockefeller University) ; Kim, Heebal (Seoul National University) ; Lee, Chul (The Rockefeller University) ; Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ; O'Toole, Brian (The Rockefeller University) ; Rhie, Arang (National Institutes of Health. National Human Genome Research Institute (USA)) ; Secomandi, Simona (University of Cyprus) ; Sozzoni, Marcella (Università di Firenze) ; Tilley, Tatiana (The Rockefeller University) ; Uliano da Silva, Marcela (Wellcome Sanger Institute (Regne Unit)) ; van den Beek, Marius (Pennsylvania State University) ; Waterhouse, Robert (University of Lausanne) ; Phillippy, Adam M. (National Institutes of Health. National Human Genome Research Institute (USA)) ; Jarvis, Erich (The Rockefeller University) ; Schatz, Michael (Johns Hopkins University) ; Nekrutenko, Anton (Pennsylvania State University) ; Formenti, Giulio (The Rockefeller University)
Improvements in genome sequencing and assembly are enabling high-quality reference genomes for all species. However, the assembly process is still laborious, computationally and technically demanding, lacks standards for reproducibility, and is not readily scalable. [...]
2024 - 10.1101/2023.06.28.546576  

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