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1.
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12 p, 2.4 MB |
Evaluation of Fourier Transform Infrared Spectroscopy as a First-Line Typing Tool for the Identification of Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae Outbreaks in the Hospital Setting
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Wang-Wang, Jun Hao (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Bordoy, Antoni E. (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Martró, Elisa (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Quesada, María Dolores (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Pérez-Vázquez, María (Instituto de Salud Carlos III) ;
Guerrero Murillo, Mercedes (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Tiburcio, Andrea (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Navarro, Marina (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Castellà, Laia (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Sopena, Nieves (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Casas, Irma (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Saludes, Verónica (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Giménez, Montserrat (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Cardona, Pere-Joan (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Universitat Autònoma de Barcelona
Early detection of pathogen cross-transmission events and environmental reservoirs is needed to control derived nosocomial outbreaks. Whole-genome sequencing (WGS) is considered the gold standard for outbreak confirmation, but, in most cases, it is time-consuming and has elevated costs. [...]
2022 -  10.3389/fmicb.2022.897161
Frontiers in microbiology, Vol. 13 (june 2022)
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2.
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9 p, 1.1 MB |
Prevalence of HPV-DNA and E6 mRNA in lung cancer of HIV-infected patients
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Sirera, Guillem (Institut Germans Trias i Pujol. Fundació Lluita Contra les Infeccions) ;
Videla, Sebastián (Institut Germans Trias i Pujol. Fundació Lluita Contra les Infeccions) ;
Saludes, Verónica (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Castellà Fernández, Eva (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Sanz, Carolina (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Ariza Fernández, A (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Clotet Sala, Bonaventura (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Martró, Elisa (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Universitat Autònoma de Barcelona
HIV-infected individuals could be at a greater risk for developing lung cancer than the general population due to the higher prevalence in the former of human papillomavirus (HPV) in the oral cavity and higher smoking rates. [...]
2022 - 10.1038/s41598-022-17237-5
Scientific reports, Vol. 12 (august 2022)
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3.
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7 p, 2.3 MB |
Monitoring SARS-CoV-2 variant transitions using differences in diagnostic cycle threshold values of target genes
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Bordoy, Antoni E. (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Saludes, Verónica (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Panisello Yagüe, David (Institut Germans Trias i Pujol. Fundació Lluita Contra les Infeccions) ;
Clarà, Gemma (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Soler, Laia (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Paris de León, Alexia (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Casañ, Cristina (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Blanco-Suárez, Ana (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Guerrero Murillo, Mercedes (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Rodríguez-Ponga, Beatriz (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Noguera-Julian, Marc (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Català-Moll, Francesc (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ;
Pey, Irina (Institut Germans Trias i Pujol. Fundació Lluita Contra les Infeccions) ;
Armengol, Maria Pilar (Institut Germans Trias i Pujol. Fundació Lluita Contra les Infeccions) ;
Casadellà, Maria (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ;
Parera, Mariona (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ;
Pluvinet, Raquel (Institut Germans Trias i Pujol. Fundació Lluita Contra les Infeccions) ;
Sumoy, Lauro (Institut Germans Trias i Pujol. Fundació Lluita Contra les Infeccions) ;
Clotet Sala, Bonaventura (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ;
Giménez, Montserrat (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Martró, Elisa (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Cardona, Pere-Joan (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Blanco Guillermo, Ignacio (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ;
Universitat Autònoma de Barcelona
Monitoring the emergence of new SARS-CoV-2 variants is important to detect potential risks of increased transmission or disease severity. We investigated the identification of SARS-CoV-2 variants from real-time reverse transcriptase polymerase chain reaction (RT-PCR) routine diagnostics data. [...]
2022 - 10.1038/s41598-022-25719-9
Scientific reports, Vol. 12 (december 2022)
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4.
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2 p, 74.0 KB |
Corrigendum : Transmissibility, hospitalization, and intensive care admissions due to omicron compared to delta variants of SARS-CoV-2 in Catalonia: A cohort study and ecological analysis
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Català, Martí (University of Oxford) ;
Coma, Ermengol (Institut Català de la Salut) ;
Alonso Muñoz, Sergio (Universitat Politècnica de Catalunya) ;
Andrés, Cristina (Hospital Universitari Vall d'Hebron) ;
Blanco Guillermo, Ignacio (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Antón, Andrés (Hospital Universitari Vall d'Hebron) ;
Bordoy, Antoni E. (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Cardona, Pere-Joan (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Fina, Francesc (Institut Català de la Salut) ;
Martró, Elisa (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Medina, Manuel (Institut Català de la Salut) ;
Mora, Núria (Institut Català de la Salut) ;
Saludes, Verónica (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Prats, Clara (Universitat Politècnica de Catalunya) ;
Prieto-Alhambra, Daniel (University of Oxford) ;
Alvarez-Lacalle, Enrique (Universitat Politècnica de Catalunya) ;
Universitat Autònoma de Barcelona
We aim to compare the severity of infections between omicron and delta variants in 609,352 SARS-CoV-2 positive cases using local hospitalization, vaccination, and variants data from the Catalan Health Care System (which covers around 7. [...]
2022 - 10.3389/fpubh.2022.1060328
Frontiers in Public Health, Vol. 10 (november 2022)
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5.
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0 p, 2.5 MB |
Transmissibility, hospitalization, and intensive care admissions due to omicron compared to delta variants of SARS-CoV-2 in Catalonia : A cohort study and ecological analysis
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Català, Martí (University of Oxford. Nuffield Department of Orthopedics, Rheumatology and Musculoskeletal Sciences) ;
Coma, Ermengol (Institut Català de la Salut) ;
Alonso Muñoz, Sergio (Universitat Politècnica de Catalunya. Departament de Física) ;
Andrés, Cristina (Instituto de Salud Carlos III) ;
Blanco Guillermo, Ignacio (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Antón, Andrés (Instituto de Salud Carlos III) ;
Bordoy, Antoni E. (Instituto de Salud Carlos III) ;
Cardona, Pere-Joan (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Fina, Francesc (Institut Català de la Salut) ;
Martró, Elisa (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Medina, Manuel (Institut Català de la Salut) ;
Mora, Núria (Institut Català de la Salut) ;
Saludes, Verónica (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Prats, Clara (Universitat Politècnica de Catalunya. Departament de Física) ;
Prieto-Alhambra, Daniel (University of Oxford. Nuffield Department of Orthopedics, Rheumatology and Musculoskeletal Sciences) ;
Alvarez-Lacalle, Enrique (Universitat Politècnica de Catalunya. Departament de Física)
We aim to compare the severity of infections between omicron and delta variants in 609,352 SARS-CoV-2 positive cases using local hospitalization, vaccination, and variants data from the Catalan Health Care System (which covers around 7. [...]
2022 - 10.3389/fpubh.2022.961030
Frontiers in Public Health, Vol. 10 (August 2022)
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6.
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8 p, 167.3 KB |
Baseline Prediction of Combination Therapy Outcome in Hepatitis C Virus 1b Infected Patients by Discriminant Analysis Using Viral and Host Factors
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Saludes, Verónica (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Bracho, Maria Alma (Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública) ;
Valero, Oliver (Universitat Autònoma de Barcelona. Departament de Matemàtiques) ;
Ardèvol, Mercè (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Planas, Ramón (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
González-Candelas, Fernando (Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública) ;
Ausina, Vicente (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Martró, Elisa (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Universitat Autònoma de Barcelona.
Departament de Genètica i de Microbiologia
Current treatment of chronic hepatitis C virus (HCV) infection has limited efficacy −especially among genotype 1 infected patients−, is costly, and involves severe side effects. Thus, predicting non-response is of major interest for both patient wellbeing and health care expense. [...]
2010 - 10.1371/journal.pone.0014132
PloS one, Vol. 5 (november 2010)
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7.
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8 p, 260.1 KB |
Relevance of Baseline Viral Genetic Heterogeneity and Host Factors for Treatment Outcome Prediction in Hepatitis C Virus 1b-Infected Patients
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Saludes, Verónica (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Bascuñana, Elisabet (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Jordana-Lluch, Elena (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Casanovas, Sònia (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Ardèvol, Mercè (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Soler, Esther (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Planas, Ramón (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Ausina, Vicente (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Martró, Elisa (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Universitat Autònoma de Barcelona
Only about 50% of patients chronically infected with HCV genotype 1 (HCV-1) respond to treatment with pegylated interferon-alfa and ribavirin (dual therapy), and protease inhibitors have to be administered together with these drugs increasing costs and side-effects. [...]
2013 - 10.1371/journal.pone.0072600
PloS one, Vol. 8 (august 2013)
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8.
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10 p, 1.4 MB |
Reliable resolution of ambiguous hepatitis C virus genotype 1 results with the Abbott HCV Genotype Plus RUO assay
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Saludes, Verónica (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Antuori Torres, Adrián (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Reinhardt, B. (Abbott GmbH & Co. KG) ;
Viciana, I. (Hospital Universitario Virgen de la Victoria (Màlaga, Andalusia)) ;
Clavijo, E. (Hospital Universitario Virgen de la Victoria (Màlaga, Andalusia)) ;
Schreiber, L. (Maccabi Mega-Lab) ;
Tenenbaum, M. (Maccabi Mega-Lab) ;
Rodríguez Frías, Francisco (Hospital Universitari Vall d'Hebron. Institut de Recerca) ;
Quer, Josep 1963- (Hospital Universitari Vall d'Hebron. Institut de Recerca) ;
Matas, L. (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Martró, Elisa (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ;
Universitat Autònoma de Barcelona
Accurate subtyping of hepatitis C virus genotype 1 (HCV-1) remains clinically and epidemiologically relevant. The Abbott HCV Genotype Plus RUO (GT Plus) assay, targeting the core region, was evaluated as a reflex test to resolve ambiguous HCV-1 results in a challenging sample collection. [...]
2019 - 10.1038/s41598-019-40099-3
Scientific reports, Vol. 9 Núm. 1 (january 2019) , p. 3678
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9.
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7 p, 281.9 KB |
Complete genome of a European hepatitis C virus subtype 1g isolate : phylogenetic and genetic analyses
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Bracho, Maria Alma (Universitat de València. Institut Cavanilles de Biodiversitat i Biologia Evolutiva) ;
Saludes, Verónica (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Martró, Elisa (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Bargalló, Ana (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
González-Candelas, Fernando (Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública) ;
Ausina, Vicente (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
Background: Hepatitis C virus isolates have been classified into six main genotypes and a variable number of subtypes within each genotype, mainly based on phylogenetic analysis. Analyses of the genetic relationship among genotypes and subtypes are more reliable when complete genome sequences (or at least the full coding region) are used; however, so far 31 of 80 confirmed or proposed subtypes have at least one complete genome available. [...]
2008 - 10.1186/1743-422X-5-72
Virology journal, Vol. 5, Núm. 72 (June 2008), p. 1-7
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