Chromosome-Level Genomics and Historical Museum Collections Reveal New Insights Into the Population Structure and Chromosome Evolution of Waterbuck
Kirkland, Corey (University of Kent)
Wang, Xi (University of Copenhagen)
Canedo-Ribeiro, Carla (University of Kent)
Álvarez-González, Lucía (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Weisz, David (The Center for Genome Architecture. Baylor College of Medicine)
Mena, Alexandria (SeaWorld San Diego)
St Leger, Judy (Cornell University College of Veterinary Medicine)
Dudchenko, Olga (Rice University)
Lieberman Aiden, Erez (Rice University)
Ruiz-Herrera, Aurora (Universitat Autònoma de Barcelona. Departament de Biologia Cel.lular, de Fisiologia i d'Immunologia)
Heller, Rasmus (University of Copenhagen)
King, Tony (University of Kent)
Farré, Marta (University of Kent)

Fecha:	2026
Resumen:	Advances in sequencing and chromosome-scale assembly have brought non-model animals into focus, deepening our understanding of genome and chromosome evolution. Here, we present the waterbuck (Kobus ellipsiprymnus) as an emerging model antelope for studying population dynamics and chromosome evolution. Waterbuck evolutionary history has been shaped by both climatic and geographic changes, as well as structural chromosome changes, principally Robertsonian (Rb) fusions. To provide new insights into waterbuck evolution, we generated a chromosome-level genome assembly for the species using PacBio HiFi and Hi-C sequencing. We further leveraged museum collections to perform whole genome sequencing (WGS) of 24 historical specimens. Combined with a previous WGS dataset (n = 119), this represents the largest study of waterbuck populations to date and reveals previously unrecognised population structure and gene flow between waterbuck populations, alongside several regions of high genomic differentiation between the two recognised subspecies. Notably, several differentiation hotspots occur near the centromeres of fixed and polymorphic Rb fusions, exhibiting signatures of low recombination and local population structure. These regions contain genes involved in development, fertility, and recombination. Our findings underscore the value of chromosome-level genome assemblies, the critical role of historical collections in capturing fine-scale population structure and gene flow in species with wide-ranging distributions, and the potential evolutionary impacts of Rb fusions on genomic differentiation and recombination landscapes.
Ayudas:	Agencia Estatal de Investigación PID2020-112557GB-I00 Generalitat de Catalunya 2021/SGR-0122 Ministerio de Ciencia, Innovación y Universidades PRE2018-083257
Derechos:	Aquest document està subjecte a una llicència d'ús Creative Commons. Es permet la reproducció total o parcial, la distribució, la comunicació pública de l'obra i la creació d'obres derivades, fins i tot amb finalitats comercials, sempre i quan es reconegui l'autoria de l'obra original.
Lengua:	Anglès
Documento:	Article ; recerca ; Versió publicada
Publicado en:	Molecular ecology, Vol. 35, Num. 1 (January 2026) , art. e70218, ISSN 1365-294X

DOI: 10.1111/mec.70218

16 p, 7.0 MB

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