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1 p, 5.9 MB |
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
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Liu, Shanlin (China Agricultural University. Department of Entomology, College of Plant Protection) ;
Westbury, Michael V. (University of Copenhagen. The GLOBE Institute) ;
Dussex, Nicolas (Centre for Palaeogenetics) ;
Kieren, J. Mitchell (University of Adelaide. School of Biological Sciences) ;
Sinding, Mikkel-Holger S. (University of Copenhagen. The GLOBE Institute) ;
Heintzman, Peter D. (UiT The Arctic University of Norway. The Arctic University Museum of Norway) ;
Duchêne, David A. (University of Copenhagen. The GLOBE Institute) ;
Kapp, Joshua D. (University of California. Department of Ecology and Evolutionary Biology) ;
Von Seth, Joahanna (Centre for Palaeogenetics) ;
Heiniger, Holly (School of Biological Sciences, University of Adelaide) ;
Sánchez-Barreiro, Fátima (University of Copenhagen. The GLOBE Institute) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
André-Olsen, Remi (Stockholm University. Science for Life Laboratory) ;
De Cahsan, Binia (University of Copenhagen. The GLOBE Institute) ;
Meng, Guanliang (China National Genebank) ;
Yang, Chentao (China National Genebank) ;
Chen, Lei (Center for Ecological and Environmental Sciences) ;
Van der Valk, Tom (Uppsala University. Department of Cell and Molecular Biology) ;
Moodley, Yoshan (University of Venda. Department of Zoology) ;
Rookmaaker, Leendert (Rhino Resource Center) ;
Bruford, Michael W. (Cardiff University. School of Biosciences) ;
Ryder, Oliver A (San Diego Zoo Wildlife Alliance) ;
Steiner, Cynthia (San Diego Zoo Wildlife Alliance) ;
Bruins-van Sonsbeek, Linda G. R. (Rotterdam Zoo) ;
Vartanyan, Sergey (Russian Academy of Sciences) ;
Guo, Chunxue (China National Genebank) ;
Cooper, Alan (South Australian Museum) ;
Kosintsev, Pavel (Russian Academy of Sciences) ;
Kirillova, Irina (Russian Academy of Sciences) ;
Lister, Adrian M. (Natural History Museum) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute) ;
Dunn, Robert R. (University of Copenhagen. The GLOBE Institute) ;
Lorenzen, Eline D. (University of Copenhagen. The GLOBE Institute) ;
Shapiro, Beth (University of California. Department of Ecology and Evolutionary Biology) ;
Zhang, Guojie (China National Genebank) ;
Antoine, Pierre-Olivier (Université Montpellier. Institut des Sciences de l'Évolution) ;
Dalén, Love (Centre for Palaeogenetics) ;
P. Gilbert, M. Thomas (University of Copenhagen. The GLOBE Institute)
Only five species of the once-diverse Rhinocerotidae remain, making the reconstruction of their evolutionary history a challenge to biologists since Darwin. We sequenced genomes from five rhinoceros species (three extinct and two living), which we compared to existing data from the remaining three living species and a range of outgroups. [...]
2021 -  10.1016/j.cell.2021.07.032
Cell, Vol. 184 (September 2021) , p. 1-12
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16 p, 809.0 KB |
A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives
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Westbury, Michael V. (University of Copenhagen. The GLOBE Institute) ;
Barnett, Ross (University of Copenhagen. The GLOBE Institute) ;
Sandoval-Velasco, Marcela (University of Copenhagen. The GLOBE Institute) ;
Gower, Graham (University of Copenhagen. The GLOBE Institute) ;
Garrett Vieira, Filipe (University of Copenhagen. The GLOBE Institute) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Hansen, Anders Johannes (University of Copenhagen. The GLOBE Institute) ;
Yamaguchi, Nobuyuki (Universiti Malaysia Terengganu. Institute of Tropical Biodiversity and Sustainable Development) ;
Werdelin, Lars (Swedish Museum of Natural History. Department of Palaeobiology) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute) ;
Lorenzen, Eline (University of Copenhagen. The GLOBE Institute)
Background: The evolutionary relationships of Felidae during their Early-Middle Miocene radiation is contentious. Although the early common ancestors have been subsumed under the grade-group Pseudaelurus, this group is thought to be paraphyletic, including the early ancestors of both modern cats and extinct sabretooths. [...]
2021 - 10.12688/openreseurope.13104.2
Open Research Europe, Vol. 1 (2021) , art. 25
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14 p, 1.8 MB |
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
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Barnett, Ross (University of Copenhagen. Section for Evolutionary Genomics) ;
Westbury, Michael V. (University of Copenhagen. Section for Evolutionary Genomics) ;
Sandoval-Velasco, Marcela (University of Copenhagen. Section for Evolutionary Genomics) ;
Garrett Vieira, Filipe (University of Copenhagen. Section for Evolutionary Genomics) ;
Jeon, Sungwon (Ulsan National Institute of Science and Technology. Department of Biomedical Engineering) ;
Zazula, Grant (Government of Yukon. Yukon Palaeontology Program) ;
Martin, Michael (Norwegian University of Science and Technology. Department of Natural History) ;
Ho, Simon Y. W. (University of Sydney. School of Life and Environmental Sciences) ;
Mather, Niklas (University of Sydney. School of Life and Environmental Sciences) ;
Gopalakrishnan, Shyam (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Ramos-Madrigal, Jazmín (University of Copenhagen. Center for Evolutionary Hologenomics) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Zepeda Mendoza, Marie Lisandra (University of Birmingham. Institute of Microbiology and Infection) ;
Antunes, Agostinho (University of Porto. Department of Biology) ;
Baez, Aldo Carmon (University of Copenhagen. Section for Evolutionary Genomics) ;
De Cahsan, Binia (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Larson, Greger (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
O'Brien, Stephen J. (Nova Southeastern University. Guy Harvey Oceanographic Center) ;
Eizirik, Eduardo (Instituto Pró-Carnívoros) ;
Johnson, Warren E. (Walter Reed Army Institute of Research) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute. Center for Species Survival) ;
Wilting, Andreas (Leibniz Institute for Zoo and Wildlife Research) ;
Fickel, Jöms (University of Potsdam. Institute for Biochemistry and Biology) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics) ;
Lorenzen, Eline D. (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Hansen, Anders J. (University of Copenhagen. Section for GeoGenetics) ;
Zhang, Guojie (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Bhak, Jong (Personal Genomics Institute. Genome Research Foundation) ;
Yamaguchi, Nobuyuki (Universiti Malaysia Terengganu. Institute of Tropical Biodiversity and Sustainable Development) ;
Gilbert, M. Thomas P. (University of Copenhagen. Center for Evolutionary Hologenomics)
Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine teeth, powerful forelimbs, a sloping back, and an enlarged optic bulb, all of which were key characteristics for predation on Pleistocene megafauna [5]. [...]
2020 - 10.1016/j.cub.2020.09.051
Current Biology, Vol. 30, Issue 24 (December 2020) , p. ages 5018-5025.e5
2 documents
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15 p, 726.6 KB |
Inference of natural selection from ancient DNA
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Dehasque, Marianne (Stockholm University) ;
Ávila-Arcos, Maria C. (UNAM Juriquilla) ;
Díez, David (Stockholm University) ;
Fumagalli, Matteo (Imperial College London) ;
Guschanski, Katerina (Uppsala University) ;
Lorenzen, Eline (University of Copenhagen) ;
Malaspinas, Anna-Sapfo (University of Lausanne. SIB Swiss Institute of Bioinformatics) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Martin, Michael (Norwegian University of Science and Technology) ;
Murray, Gemma G. R. (University of Cambridge) ;
Papadopulos, Alexander S. T. (Bangor University) ;
Therkildsen, Nina Overgaard (Cornell University) ;
Wegmann, Daniel (Swiss Institute of Bioinformatics) ;
Dalén, Love (Swedish Museum of Natural History) ;
Foote, Andrew D. (Bangor University)
Evolutionary processes, including selection, can be indirectly inferred based on patterns of genomic variation among contemporary populations or species. However, this often requires unrealistic assumptions of ancestral demography and selective regimes. [...]
2020 - 10.1002/evl3.165
Evolution Letters, Vol. 4, Issue 2 (April 2020) , p. 94-108
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