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1.
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10 p, 1.5 MB |
Prediction of protein subplastid localization and origin with PlastoGram
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Sidorczuk, Katarzyna (University of Wrocław) ;
Gagat, Przemysław (University of Wrocław) ;
Kała, Jakub (Warsaw University of Technology) ;
Nielsen, Henrik (Technical University of Denmark. Department of Health Technology) ;
Pietluch, Filip (University of Wrocław) ;
Mackiewicz, Paweł (University of Wrocław) ;
Burdukiewicz, Michał (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Due to their complex history, plastids possess proteins encoded in the nuclear and plastid genome. Moreover, these proteins localize to various subplastid compartments. Since protein localization is associated with its function, prediction of subplastid localization is one of the most important steps in plastid protein annotation, providing insight into their potential function. [...]
2023 -  10.1038/s41598-023-35296-0
Scientific reports, Vol. 13 (May 2023) , art. 8365
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2.
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13 p, 3.4 MB |
TEMPRANILLO homologs in apple regulate flowering time in the woodland strawberry Fragaria vesca
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Dejahang, Ata (National Institute of Genetic Engineering and Biotechnology. Department of Plant Biotechnology (Iran)) ;
Maghsoudi, Naeimeh (University of Tabriz. Department of Horticultural Sciences) ;
Mousavi, Amir (National Institute of Genetic Engineering and Biotechnology. Department of Plant Biotechnology (Iran)) ;
Farsad-Akhtar, Nader (University of Tabriz. Department of Plant Biology) ;
Matias-Hernandez, Luis (Centre de Recerca en Agrigenòmica) ;
Pelaz, Soraya (Centre de Recerca en Agrigenòmica) ;
Folta, Kevin (University of Florida. Horticultural Sciences Department) ;
Mahna, Nasser (Centre de Recerca en Agrigenòmica)
The long juvenile period of fruit trees makes their breeding costly and time-consuming. Therefore, flowering time engineering and shortening the juvenile phase have become a breeding priority for the genetic improvement of fruit tree crops. [...]
2023 - 10.1038/s41598-023-29059-0
Scientific reports, Vol. 13 (February 2023) , art. 1968
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3.
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32 p, 13.6 MB |
The Arabidopsis SAC9 enzyme is enriched in a cortical population of early endosomes and restricts PI(4,5)P2 at the plasma membrane
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Lebecq, Alexis (Université de Lyon) ;
Doumane, Mehdi (Université de Lyon) ;
Fangain, Aurelie (Université de Lyon) ;
Bayle, Vincent (Université de Lyon) ;
Leong, Jia Xuan (University of Tübingen) ;
Rozier, Frédérique (Université de Lyon) ;
Marques-Bueno, Mar (Centre de Recerca en Agrigenòmica) ;
Armengot, Laia (Centre de Recerca en Agrigenòmica) ;
Boisseau, Romain (University of Montana. Division of Biological Science) ;
Simon, Mathilde Laetitia (Université de Lyon) ;
Franz-Wachtel, Mirita (University of Tübingen. Department of Quantitative Proteomics) ;
Macek, Boris (University of Tübingen. Department of Quantitative Proteomics) ;
Üstün, Suayib (Ruhr-University Bochum) ;
Jaillais, Yvon (Université de Lyon) ;
Caillaud, Marie-Cécile (Université de Lyon)
Membrane lipids, and especially phosphoinositides, are differentially enriched within the eukaryotic endomembrane system. This generates a landmark code by modulating the proper-ties of each membrane. [...]
2022 - 10.7554/eLife.73837
eLife, Vol. 11 (August 2022) , art. e73837
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4.
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17 p, 16.8 MB |
Expression strategies for the efficient synthesis of antimicrobial peptides in plastids
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Hoelscher, Matthijs P. (Utrecht University) ;
Forner, Joachim (Max-Planck-Institut für Molekulare Pflanzenphysiologie) ;
Calderone, Silvia (Centre de Recerca en Agrigenòmica) ;
Krämer, Carolin (Max-Planck-Institut für Molekulare Pflanzenphysiologie) ;
Taylor, Zachary (Max-Planck-Institut für Molekulare Pflanzenphysiologie) ;
Loiacono, F. Vanessa (Max-Planck-Institut für Molekulare Pflanzenphysiologie) ;
Agrawal, Shreya (Neoplants (Gif-sur-Yvette)) ;
Karcher, Daniel (Max-Planck-Institut für Molekulare Pflanzenphysiologie) ;
Moratti, Fabio (Max-Planck-Institut für Molekulare Pflanzenphysiologie) ;
Kroop, Xenia (Max-Planck-Institut für Molekulare Pflanzenphysiologie) ;
Bock, Ralph (Max-Planck-Institut für Molekulare Pflanzenphysiologie)
Antimicrobial peptides (AMPs) kill microbes or inhibit their growth and are promising next-generation antibiotics. Harnessing their full potential as antimicrobial agents will require methods for cost-effective large-scale production and purification. [...]
2022 - 10.1038/s41467-022-33516-1
Nature communications, Vol. 13 (October 2022) , art. 5856
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5.
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15 p, 4.7 MB |
Pollen tube emergence is mediated by ovary-expressed ALCATRAZ in cucumber
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Cheng, Zhihua (China Agricultural University) ;
Liu, Xiaofeng (China Agricultural University) ;
Yan, Shuangshuang (China Agricultural University) ;
Liu, Bin (Centre de Recerca en Agrigenòmica) ;
Zhong, Yanting (China Agricultural University) ;
Song, Weiyuan (China Agricultural University) ;
Chen, Jiacai (China Agricultural University) ;
Wang, Zhongyi (China Agricultural University) ;
Che, Gen (China Agricultural University) ;
Liu, Liu (China Agricultural University) ;
Ying, Ao (China Agricultural University) ;
Lv, Hanli (China Agricultural University) ;
Han, Lijie (China Agricultural University) ;
Li, Min (China Agricultural University) ;
Zhao, Jianyu (China Agricultural University) ;
Xu, Junqiang (Yunnan Agricultural University) ;
Yang, Zhengan (Yunnan Agricultural University) ;
Zhou, Zhaoyang (China Agricultural University) ;
Zhang, Xiaolan (China Agricultural University)
Pollen tube guidance within female tissues of flowering plants can be divided into preovular guidance, ovular guidance and a connecting stage called pollen tube emergence. As yet, no female factor has been identified to positively regulate this transition process. [...]
2023 - 10.1038/s41467-023-35936-z
Nature communications, Vol. 14 (January 2023) , art. 258
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6.
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16 p, 2.6 MB |
Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree
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Sebastiana, M. (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Gargallo-Garriga, Albert (Czech Academy of Sciences. Global Change Research Institute) ;
Sardans i Galobart, Jordi (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Pérez-Trujillo, Míriam (Universitat Autònoma de Barcelona. Servei de Ressonància Magnètica Nuclear) ;
Monteiro, F. (Universidade de Lisboa. Instituto Superior de Agronomia) ;
Figueiredo, Andreia (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Maia, M. (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Nascimento, R. (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Silva, M. Sousa (Universidade de Lisboa. Departamento de Química e Bioquímica) ;
Ferreira, A. N. (Universidade de Lisboa. Departamento de Química e Bioquímica) ;
Cordeiro, C. (Universidade de Lisboa. Departamento de Química e Bioquímica) ;
Marques, A. P. (Universidade de Lisboa. Departamento de Química e Bioquímica) ;
Sousa, L. (Universidade de Lisboa. Centro de Estatística e Aplicações) ;
Malhó, R. (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Peñuelas, Josep (Centre de Recerca Ecològica i d'Aplicacions Forestals)
Mycorrhizas are known to have a positive impact on plant growth and ability to resist major biotic and abiotic stresses. However, the metabolic alterations underlying mycorrhizal symbiosis are still understudied. [...]
2021 - 10.1038/s41598-021-87886-5
Scientific reports, Vol. 11 (April 2021) , art. 8576
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7.
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8.
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30 p, 4.4 MB |
A mobile ELF4 delivers circadian temperature information from shoots to roots
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Chen, Wei Wei (Centre de Recerca en Agrigenòmica) ;
Takahashi, Nozomu (Centre de Recerca en Agrigenòmica) ;
Hirata, Yoshito (The University of Tokyo. Mathematics and Informatics Center) ;
Ronald, James (University of York. Department of Biology) ;
Porco, Silvana (University of Southern California. Keck School of Medicine) ;
Davis, Seth J. (University of York. Department of Biology) ;
Nusinow, Dmitri A. (Donald Danforth Plant Science Center) ;
Kay, Steve A. (University of Southern California. Keck School of Medicine) ;
Mas, Paloma (Centre de Recerca en Agrigenòmica)
The circadian clock is synchronized by environmental cues, mostly by light and temperature. Explaining how the plant circadian clock responds to temperature oscillations is crucial to understanding plant responsiveness to the environment. [...]
2020 - 10.1038/s41477-020-0634-2
Nature plants, Vol. 6, issue 4 (April 2020) , p. 416-426
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9.
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35 p, 12.9 MB |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits
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Zhao, Guangwei (Zhengzhou Fruit Research Institute) ;
Lian, Qun (Agricultural Genomics Institute at Shenzhen) ;
Zhang, Zhonghua (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Fu, Qiushi (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
He, Yuhua (Zhengzhou Fruit Research Institute) ;
Ma, Shuangwu (Zhengzhou Fruit Research Institute) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Monforte, Antonio J. (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Wang, Pingyong (Zhengzhou Fruit Research Institute) ;
Julca, Irene (Centre de Recerca en Agrigenòmica) ;
Wang, Huaisong (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Liu, Junpu (Zhengzhou Fruit Research Institute) ;
Xu, Yong (Beijing Key Laboratory of Vegetable Germplasm Improvement) ;
Wang, Runze (Nanjing Agricultural University) ;
Ji, Jiabing (Agricultural Genomics Institute at Shenzhen) ;
Xu, Zhihong (Zhengzhou Fruit Research Institute) ;
Kong, Weihu (Zhengzhou Fruit Research Institute) ;
Zhong, Yang (Agricultural Genomics Institute at Shenzhen) ;
Shang, Jianli (Zhengzhou Fruit Research Institute) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Zhang, Jian (Zhengzhou Fruit Research Institute) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Oren, Elad (NeweYa'ar Research Center) ;
Ou, Diandian (Zhengzhou Fruit Research Institute) ;
Wang, Jiming (Zhengzhou Fruit Research Institute) ;
Sun, Dexi (Zhengzhou Fruit Research Institute) ;
Zhao, Shengjie (Zhengzhou Fruit Research Institute) ;
Zhu, Yingchun (Zhengzhou Fruit Research Institute) ;
Li, Na (Zhengzhou Fruit Research Institute) ;
Katzir, Nurit (NeweYa'ar Research Center) ;
Gur, Amit (NeweYa'ar Research Center) ;
Dogimont, Catherine (Institut National de la Recherche Agronomique (França)) ;
Schaefer, Hanno (Technical University of Munich. Department of Ecology and Ecosystem Management) ;
Fan, Wei (Agricultural Genomics Institute at Shenzhen) ;
Bendahmane, Abdelhafid (Institut National de la Recherche Agronomique (França)) ;
Fei, Zhangjun (Cornell University. Boyce Thompson Institute for Plant Research) ;
Pitrat, Michel (Institut National de la Recherche Agronomique (França)) ;
Gabaldón, Toni (Centre de Regulació Genòmica) ;
Lin, Tao (Agricultural Genomics Institute at Shenzhen) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Xu, Yongyang (Zhengzhou Fruit Research Institute) ;
Huang, Sanwen (Agricultural Genomics Institute at Shenzhen)
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. [...]
2019 - 10.1038/s41588-019-0522-8
Nature genetics, Vol. 51, issue 11 (Nov. 2019) , p. 1607-1615
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10.
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18 p, 3.7 MB |
A Sizer model for cell differentiation in Arabidopsis thaliana root growth
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Pavelescu, Irina (Centre de Recerca en Agrigenòmica) ;
Vilarrasa Blasi, Josep (Centre de Recerca en Agrigenòmica) ;
Planas Riverola, Ainoa (Centre de Recerca en Agrigenòmica) ;
González-García, Mary Paz (Centre de Recerca en Agrigenòmica) ;
Caño Delgado, Ana I. (Centre de Recerca en Agrigenòmica) ;
Ibañes, Marta (Universitat de Barcelona. Institut de Recerca en Sistemes Complexos)
Plant roots grow due to cell division in the meristem and subsequent cell elongation and differentiation, a tightly coordinated process that ensures growth and adaptation to the changing environment. [...]
2018 - 10.15252/msb.20177687
Molecular systems biology, Vol. 14, issue 1 (Jan. 2018) , e7687
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