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The genome of woodland strawberry (Fragaria vesca)
Shulaev, Vladimir (University of North Texas. Department of Biological Sciences)
Sargent, Daniel J. (East Malling Research)
Crowhurst, Ross N. (New Zealand Institute for Plant and Food Research Limited)
Mockler, Todd C. (Oregon State University. Center for Genome Research and Biocomputing)
Folkerts, Otto (Chromatin Inc.)
Delcher, Arthur L. (University of Maryland. Center for Bioinformatics and Computational Biology)
Jaiswal, Pankaj (Oregon State University. Department of Botany and Plant Pathology)
Mockaitis, Keithanne (Indiana University. Center for Genomics and Bioinformatics)
Liston, Aaron (Oregon State University. Department of Botany and Plant Pathology)
Mane, Shrinivasrao P. (Virginia Bioinformatics Institute)
Burns, Paul (Joint Georgia Tech and Emory Wallace H. Coulter. Department of Biomedical Engineering)
Davis, Thomas M. (University of New Hampshire. Department of Biological Sciences)
Slovin, Janet P. (Henry Wallace Beltsville Agricultural Research Center)
Bassil, Nahla (National Clonal Germplasm Repository)
Hellens, Roger P. (New Zealand Institute for Plant and Food Research Limited)
Evans, Clive (State University. Virginia Bioinformatics Institute)
Harkins, Tim (Roche Diagnostics. Roche Applied Science)
Kodira, Chinnappa (Roche Diagnostics. Roche Applied Science)
Desany, Brian (Roche Diagnostics. Roche Applied Science)
Crasta, Oswald R. (Chromatin Inc.)
Jensen, Roderick V. (Virginia Tech. Department of Biological Sciences)
Allan, Andrew C. (New Zealand Institute for Plant and Food Research Limited)
Michael, Todd P. (State University of New Jersey. Waksman Institute of Microbiology)
Setubal, Joao Carlos (Virginia Tech. Department of Computer Science)
Celton, Jean-Marc (University of the Western Cape. Department of Biotechnology)
Rees, D. Jasper G. (University of the Western Cape. Department of Biotechnology)
Williams, Kelly P. (State University. Virginia Bioinformatics Institute)
Holt, Sarah H. (Institute for Sustainable and Renewable Resources)
Rojas, Juan Jairo (State University. Virginia Polytechnic Institute. Department of Horticulture)
Chatterjee, Mithu (University of Florida. Graduate Program for Plant Molecular and Cellular Biology)
Liu, Bo (University of New Hampshire. Department of Biological Sciences)
Silva, Herman (University of Chile. Millennium Nucleus in Plant Cell Biotechnology)
Meisel, Lee (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology)
Adato, Avital (Weizmann Institute of Science. Department of Plant Sciences)
Filichkin, Sergei A. (Oregon State University. Center for Genome Research and Biocomputing)
Troggio, Michela (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige ()
Viola, Roberto (Istituto Agrario San Michele all'Adige (IASMA). Research and Innovation Centre. Foundation Edmund Mach)
Ashman, Tia-Lynn (University of Pittsburgh. Department of Biological Sciences)
Wang, Hao (University of Georgia. Department of Genetics)
Dharmawardhana, Palitha (Oregon State University. Department of Botany and Plant Pathology)
Elser, Justin (Oregon State University. Department of Botany and Plant Pathology)
Raja, Rajani (Oregon State University. Department of Botany and Plant Pathology)
Priest, Henry D. (Oregon State University. Center for Genome Research and Biocomputing)
Bryant, Douglas W. (Oregon State University. Center for Genome Research and Biocomputing)
Fox, Samuel E. (Oregon State University. Center for Genome Research and Biocomputing)
Givan, Scott A. (Oregon State University. Center for Genome Research and Biocomputing)
Wilhelm, Larry J. (Oregon State University. Center for Genome Research and Biocomputing)
Naithani, Sushma (Oregon State University. Department of Horticulture)
Christoffels, Alan (University of the Western Cape. South African National Bioinformatics Institute)
Salama, David Y. (University of Florida. Horticultural Sciences Department)
Carter, Jade (Indiana University. Center for Genomics and Bioinformatics)
Girona, Elena L. (East Malling Research)
Zdepski, Anna (State University of New Jersey. Waksman Institute of Microbiology)
Wang, Wenqin (State University of New Jersey. Waksman Institute of Microbiology)
Kerstetter, Randall A (State University of New Jersey. Waksman Institute of Microbiology)
Schwab, Wilfried (Technical University München. Biotechnology of Natural Products)
Korban, Schuyler S. (University of Illinois. Department of Natural Resources and Environmental Sciences)
Davik, Jahn (Norwegian Institute for Agricultural and Environmental Research. Genetics and Biotechnology)
Monfort Vives, Amparo (Centre de Recerca en Agrigenòmica)
Denoyes-Rothan, Beatrice (Institut National de la Recherche Agronomique. Unité de Recherche des Espèces Fruitières)
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
Mittler, Ron (University of North Texas. Department of Biological Sciences)
Flinn, Barry (Institute for Sustainable and Renewable Resources. Institute for Advanced Learning and Research)
Aharoni, Asaph (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology. Centro de Biotecnología Vegetal.)
Bennetzen, Jeffrey L. (University of Georgia. Department of Genetics)
Salzberg, Steven L. (University of Maryland. Center for Bioinformatics and Computational Biology)
Dickerman, Allan W (State University. Virginia Bioinformatics Institute. Virginia Polytechnic Institute)
Velasco, Riccardo (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige)
Borodovsky, Mark (Georgia Tech. School of Computational Science and Engineering)
Veilleux, Richard E. (State University. Virginia Polytechnic Institute. Department of Horticulture)
Folta, Kevin M. (University of Florida. Graduate Program for Plant Molecular and Cellular Biology)

Date: 2011
Abstract: The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria Ã- ananassa) and other economically important rosaceous plants. Here we report the draft F. vesca genome, which was sequenced to ×-39 coverage using second-generation technology, assembled de novo and then anchored to the genetic linkage map into seven pseudochromosomes. This diploid strawberry sequence lacks the large genome duplications seen in other rosids. Gene prediction modeling identified 34,809 genes, with most being supported by transcriptome mapping. Genes critical to valuable horticultural traits including flavor, nutritional value and flowering time were identified. Macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes. New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted.
Rights: Aquest document està subjecte a una llicència d'ús Creative Commons. Es permet la reproducció total o parcial, la distribució, la comunicació pública de l'obra, i la creació d'obres derivades, sempre que no sigui amb finalitats comercials i que es distribueixin sota la mateixa llicència que regula l'obra original. Cal que es reconegui l'autoria de l'obra original Creative Commons
Language: Anglès.
Document: article ; recerca ; publishedVersion
Published in: Nature Genetics, Vol. 43, Issue 2 (February 2011) , p. 109-116, ISSN 1546-1718

DOI: 10.1038/ng.740
PMID: 21186353


10 p, 1.6 MB

The record appears in these collections:
Research literature > UAB research groups literature > Research Centres and Groups (scientific output) > Experimental sciences > CRAG (Centre for Research in Agricultural Genomics)
Articles > Research articles
Articles > Published articles

 Record created 2020-01-24, last modified 2020-03-17



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