1.
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63 p, 25.7 MB |
A draft human pangenome reference
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Liao, Wen-Wei (Washington University School of Medicine) ;
Asri, Mobin (University of California) ;
Ebler, Jana (Heinrich Heine University) ;
Doerr, Daniel (Heinrich Heine University) ;
Haukness, Marina (University of California) ;
Hickey, Glenn (University of California) ;
Lu, Shuangjia (Yale University School of Medicine) ;
Lucas, Julian K. (University of California) ;
Monlong, Jean (University of California) ;
Abel, Haley J. (Washington University School of Medicine) ;
Buonaiuto, Silvia (Consiglio Nazionale delle Ricerche. Istituto di Genetica e Biofisica) ;
Chang, Xian H. (University of California) ;
Cheng, Haoyu (Harvard Medical School) ;
Chu, Justin (Dana-Farber Cancer Institute (Boston, Estats Units d'Amèrica)) ;
Colonna, Vincenza (University of Tennessee Health Science Center) ;
Eizenga, Jordan (University of California) ;
Feng, Xiaowen (Harvard Medical School) ;
Fischer, Christian (University of Tennessee Health Science Center) ;
Fulton, Robert S. (Washington University School of Medicine) ;
Garg, Shilpa (Technical University of Denmark) ;
Groza, Cristian (McGill University) ;
Guarracino, Andrea (Tecnopolo umano. Centro di ricerca sulla genomica) ;
Harvey, William T. (University of Washington School of Medicine) ;
Heumos, Simon (University of Tübingen) ;
Howe, Kerstin (Wellcome Trust Sanger Institute (Regne Unit)) ;
Jain, Miten (Northeastern University (USA)) ;
Lu, Tsung-Yu (University of Southern California) ;
Markello, Charles (University of California) ;
Martin, Fergal J. (Wellcome Genome Campus (UK)) ;
Mitchell, Matthew W. (Coriell Institute for Medical Research (USA)) ;
Munson, Katherine M. (University of Washington School of Medicine) ;
Mwaniki, Moses Njagi (Università di Pisa) ;
Novak, Adam M. (University of California) ;
Olsen, Hugh E. (University of California) ;
Pesout, Trevor (University of California) ;
Porubsky, David (University of Washington School of Medicine) ;
Prins, Pjotr (University of Tennessee Health Science Center) ;
Sibbesen, Jonas A. (University of Copenhagen) ;
Sirén, Jouni (University of California) ;
Tomlinson, Chad (Washington University School of Medicine) ;
Villani, Flavia (University of Tennessee Health Science Center) ;
Vollger, Mitchell R. (University of Washington School of Medicine) ;
Antonacci-Fulton, Lucinda L. (Washington University School of Medicine) ;
Baid, Gunjan (Google (USA)) ;
Baker, Carl A. (University of Washington School of Medicine) ;
Belyaeva, Anastasiya (Google (USA)) ;
Billis, Konstantinos (Wellcome Genome Campus (UK)) ;
Carroll, Andrew (Google (USA)) ;
Chang, Pi-Chuan (Google (USA)) ;
Cody, Sarah (Washington University School of Medicine) ;
Cook, Daniel E. (Google (USA)) ;
Cook-Deegan, Robert M. (Arizona State University) ;
Cornejo, Omar E. (University of California) ;
Diekhans, Mark (University of California) ;
Ebert, Peter (Heinrich Heine University) ;
Fairley, Susan (Wellcome Genome Campus (UK)) ;
Fedrigo, Olivier (The Rockefeller University) ;
Felsenfeld, Adam L. (National Institutes of Health (USA)) ;
Formenti, Giulio (The Rockefeller University) ;
Frankish, Adam (Wellcome Genome Campus (UK)) ;
Gao, Yan (The Children's Hospital of Philadelphia) ;
Garrison, Nanibaa' A. (University of California) ;
Giron, Carlos Garcia (Wellcome Genome Campus (UK)) ;
Green, Richard E. (Dovetail Genomics) ;
Haggerty, Leanne (Wellcome Genome Campus (UK)) ;
Hoekzema, Kendra (University of Washington School of Medicine) ;
Hourlier, Thibaut (Wellcome Genome Campus (UK)) ;
Ji, Hanlee P. (Stanford University School of Medicine) ;
Kenny, Eimear E. (Icahn School of Medicine at Mount Sinai) ;
Koenig, Barbara A. (University of California) ;
Kolesnikov, Alexey (Google (USA)) ;
Korbel, Jan O. (European Molecular Biology Laboratory) ;
Kordosky, Jennifer (University of Washington School of Medicine) ;
Koren, Sergey (National Institutes of Health (USA)) ;
Lee, HoJoon (Stanford University School of Medicine) ;
Lewis, Alexandra P. (University of Washington School of Medicine) ;
Magalhães, Hugo (Heinrich Heine University) ;
Marco-Sola, Santiago (Universitat Autònoma de Barcelona. Departament d'Arquitectura de Computadors i Sistemes Operatius) ;
Marijon, Pierre (Heinrich Heine University) ;
McCartney, Ann (National Institutes of Health (USA)) ;
McDaniel, Jennifer (National Institute of Standards and Technology (USA)) ;
Mountcastle, Jacquelyn (The Rockefeller University) ;
Nattestad, Maria (Google (USA)) ;
Nurk, Sergey (National Institutes of Health (USA)) ;
Olson, Nathan D. (National Institute of Standards and Technology (USA)) ;
Popejoy, Alice B. (University of California) ;
Puiu, Daniela (Johns Hopkins University) ;
Rautiainen, Mikko (National Institutes of Health (USA)) ;
Regier, Allison A. (Washington University School of Medicine) ;
Rhie, Arang (National Institutes of Health (USA)) ;
Sacco, Samuel (University of California) ;
Sanders, Ashley D. (Max Delbrück Center for Molecular Medicine in the Helmholtz Association) ;
Schneider, Valerie A. (National Institutes of Health (USA)) ;
Schultz, Baergen I. (National Institutes of Health (USA)) ;
Shafin, Kishwar (Google (USA)) ;
Smith, Michael W. (National Institutes of Health (USA)) ;
Sofia, Heidi J. (National Institutes of Health (USA)) ;
Abou Tayoun, Ahmad N. (Mohammed Bin Rashid University of Medicine and Health Sciences) ;
Thibaud-Nissen, Françoise (National Institutes of Health (USA)) ;
Tricomi, Francesca Floriana (Wellcome Genome Campus (UK)) ;
Wagner, Justin (National Institute of Standards and Technology (USA)) ;
Walenz, Brian (National Institutes of Health (USA)) ;
Wood, Jonathan M. D. (Wellcome Trust Sanger Institute (Regne Unit)) ;
Zimin, Aleksey V. (Johns Hopkins University) ;
Bourque, Guillaume (Kyoto University) ;
Chaisson, Mark (University of Southern California) ;
Flicek, Paul (Wellcome Genome Campus (UK)) ;
Phillippy, Adam M. (National Institutes of Health (USA)) ;
Zook, Justin M. (National Institute of Standards and Technology (USA)) ;
Eichler, Evan E. (Howard Hughes Medical Institute) ;
Haussler, David (Howard Hughes Medical Institute) ;
Wang, Ting (Washington University School of Medicine) ;
Jarvis, Erich (The Rockefeller University) ;
Miga, Karen H. (University of California) ;
Garrison, Erik (University of Tennessee Health Science Center) ;
Marschall, Tobias (Heinrich Heine University) ;
Hall, Ira M. (Yale University School of Medicine) ;
Li, Heng (Harvard Medical School) ;
Paten, Benedict (University of California)
Here the Human Pangenome Reference Consortium presents a first draft of the human pangenome reference. The pangenome contains 47 phased, diploid assemblies from a cohort of genetically diverse individuals1. [...]
2023 - 10.1038/s41586-023-05896-x
Nature, Vol. 617 (May 2023) , p. 312-324
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2.
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7 p, 1.5 MB |
A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)
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Palmada-Flores, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Orkin, Joseph (Université de Montréal. Département d'anthropologie) ;
Haase, Bettina (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Mountcastle, Jacquelyn (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Bertelsen, Mads (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Fedrigo, Olivier (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Kuderna, Lukas (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Jarvis, Erich (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont)
Background: The ring-tailed lemur (Lemur catta) is a charismatic strepsirrhine primate endemic to Madagascar. These lemurs are of particular interest, given their status as a flagship species and widespread publicity in the popular media. [...]
2022 - 10.1093/gigascience/giac026
GigaScience, Vol. 11, Num. 1 (April 2022) , art. giac026
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3.
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8 p, 1.3 MB |
Standards recommendations for the Earth BioGenome Project
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Lawniczak, Mara K. N. (Wellcome Sanger Institute (Cambridge)) ;
Durbin, Richard (University of Cambridge. Department of Genetics) ;
Flicek, Paul (Wellcome Sanger Institute (Cambridge)) ;
Lindblad-Toh, Kerstin (Uppsala University. Department of Medical Biochemistry & Microbiology) ;
Wei, Xiaofeng (China National GeneBank) ;
Archibald, John M. (Dalhousie University. Department of Biochemistry & Molecular Biology) ;
Baker, William J.. (Royal Botanic Gardens. Department of Accelerated Taxonomy) ;
Belov, Katherine (University of Sydney. School of Life and Environmental Sciences) ;
Blaxter, Mark (Wellcome Sanger Institute (Cambridge)) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Childers, Anna K. (US Department of Agriculture. Beltsville Agricultural Research Center) ;
Coddington, Jonathan A. (Smithsonian Institution. National Museum of Natural History) ;
Crandall, Keith A. (George Washington University. Department of Biostatistics & Bioinformatics) ;
Crawford, Andrew J. (Universidad de los Andes. Department of Biological Sciences (Colombia)) ;
Davey, Robert P. (Norwich Research Park. Earlham Institute (UK)) ;
Di Palma, Federica (Genome British Columbia (Vancouver)) ;
Fang, Qi (BGI-Shenzhen (China)) ;
Haerty, Wilfried (Norwich Research Park. Earlham Institute (UK)) ;
Hall, Neil (Norwich Research Park. Earlham Institute (UK)) ;
Hoff, Katharina (University of Greifswald. Center for Functional Genomics of Microbes) ;
Howe, Kerstin (Wellcome Sanger Institute (Cambridge)) ;
Jarvis, Erich (The Rockefeller University. Vertebrate Genomes Laboratory (USA)) ;
Johnson, Warren E. (Smithsonian Conservation Biology Institute) ;
Johnson, Rebecca (Smithsonian Institution. National Museum of Natural History) ;
Kersey, Paul J. (European Bioinformatics Institute. European Molecular Biology Laboratory (UK)) ;
Liu, Xin (China National GeneBank) ;
Lopez, Jose V. (Nova Southeastern University. Guy Harvey Oceanographic Center) ;
Myers, Eugene W. (Max Planck Institute of Molecular Cell Biology and Genetics (Germany)) ;
Vinnere Pettersson, Olga (Uppsala University. Science for Life Laboratory) ;
Phillippy, Adam M. (National Institutes of Health. National Human Genome Research Institute (USA)) ;
Poelchau, Monica (United States. Department of Agriculture. Agricultural Research Service) ;
Pruitt, Kim D. (National Library of Medicine. National Center for Biotechnology Information (USA)) ;
Rhie, Arang (National Institutes of Health. National Human Genome Research Institute (USA)) ;
Castilla-Rubio, Juan Carlos (Spacetime Ventures (Brazil)) ;
Sahu, Sunil Kumar (China National GeneBank) ;
Salmon, Nicholas A. (Wellcome Sanger Institute (Cambridge)) ;
Soltis, Pamela (University of Florida. Florida Museum of Natural History) ;
Swarbreck, David (Norwich Research Park. Earlham Institute (UK)) ;
Thibaud-Nissen, Françoise (National Library of Medicine. National Center for Biotechnology Information (USA)) ;
Wang, Sibo (China National GeneBank) ;
Wegrzyn, Jill (University of Connecticut. Department of Ecology and Evolutionary Biology) ;
Zhang, Guojie (China National GeneBank) ;
Zhang, He (BGI-Shenzhen (China)) ;
Lewin, Harris A. (University of California Davis. Department of Evolution and Ecology (USA)) ;
Richards, Stephen (University of California Davis. Genome Center)
A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. [...]
2022 - 10.1073/pnas.2115639118
Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Num. 4 (January 2022) , art. e2115639118
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4.
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7 p, 1.4 MB |
The Earth BioGenome Project 2020: Starting the clock
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Lewin, Harris A. (University of California Davis. Department of Evolution and Ecology (USA)) ;
Richards, Stephen (University of California Davis. Genome Center) ;
Aiden, Erez (Baylor College of Medicine) ;
Allende, Miguel L. (Universidad de Chile. Center for Genome Regulation) ;
Archibald, John M. (Dalhousie University. Department of Biochemistry & Molecular Biology) ;
Bálint, Miklós M. (Senckenberg Leibniz Institution for Biodiversity and Earth System Research. LOEWE Centre of Translational Biodiversity Genomics) ;
Barker, Katharine M. (Smithsonian Institution. National Museum of Natural History) ;
Baumgartnerk, Bridget (Revive & Restore (USA)) ;
Belov, Katherine (University of Sydney. School of Life and Environmental Sciences) ;
Bertorelle, Giorgio (University of Ferrara. Department of Life Sciences and Biotechnology) ;
Blaxter, Mark (Wellcome Sanger Institute (Cambridge)) ;
Cai, Jing (Northwestern Polytechnical University. School of Ecology and Environment (China)) ;
Caperello, Nicolette (University of California Davis. Genome Center) ;
Carlson, Keith (University of California Santa Barbara) ;
Castilla-Rubio, Juan Carlos (Spacetime Ventures (Brazil)) ;
Chaw, Shu-Miaw (Academia Sinica. Biodiversity Research Center (Taiwan)) ;
Chen, Lei (Northwestern Polytechnical University. School of Ecology and Environment (China)) ;
Childers, Anna K. (US Department of Agriculture. Beltsville Agricultural Research Center) ;
Coddington, Jonathan A. (Smithsonian Institution. National Museum of Natural History) ;
Conde, Dalia A. (University of Southern Denmark. Department of Biology) ;
Corominas, Montserrat (Universitat de Barcelona. Departament de Genètica, Microbiologia i Estadística) ;
Crandall, Keith A. (George Washington University. Department of Biostatistics & Bioinformatics) ;
Crawford, Andrew J. (Universidad de los Andes. Department of Biological Sciences (Colombia)) ;
Di Palma, Federica (Genome British Columbia (Vancouver)) ;
Durbin, Richard (University of Cambridge. Department of Genetics) ;
Ebenezer, ThankGod E. (Wellcome Genome Campus. European Bioinformatics Institute) ;
Edwards, Scott (Harvard University. Department of Organismic and Evolutionary Biology) ;
Fedrigo, Olivier (The Rockefeller University. Laboratory of the Neurogenetics of Language (USA)) ;
Flicek, Paul (Wellcome Trust Sanger Institute (Regne Unit)) ;
Formenti, Giulio (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Gibbs, Richard A. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute) ;
Goldstein, Melissa M. (George Washington University. Department of Health Policy and Management) ;
Marshall Graves, Jennifer A. (University of Canberra. Institute for Applied Ecology) ;
Greely, Henry (Stanford University. Stanford Law School) ;
Grigoriev, Igor (United States. Department of Energy. Joint Genome Institute) ;
Hackett, Kevin J. (United States. Department of Agriculture. Agricultural Research Service) ;
Hall, Neil (Norwich Research Park. Earlham Institute (UK)) ;
Haussler, David (University of California Santa Cruz. Genome Institute (USA)) ;
Helgen, Kristofer M. (Australian Museum Research Institute) ;
Hogg, Carolyn J. (University of Sydney. School of Life and Environmental Sciences) ;
Isobe, Sachiko (Kazusa DNA Research Institute. Department of Frontier Research and Development) ;
Jakobsen, Kjetill Sigurd (University of Oslo. Department of Biosciences) ;
Janke, Axel (Senckenberg Leibniz Institution for Biodiversity and Earth System Research. LOEWE Centre of Translational Biodiversity Genomics) ;
Jarvis, Erich (The Rockefeller University. Laboratory of the Neurogenetics of Language (USA)) ;
Johnson, Warren E. (Smithsonian Conservation Biology Institute) ;
Jones, Steven J. M. (Canada's Michael Smith Genome Sciences Centre) ;
Karlsson, Elinor K. (University of Massachusetts Medical School. Bioinformatics and Integrative Biology) ;
Kersey, Paul J. (Royal Botanic Gardens Kew) ;
Kim, Jin-Hyoung (Korea Polar Research Institute. Division of Life Sciences) ;
Kress, W. John (Smithsonian Institution. National Museum of Natural History) ;
Kuraku, Shigehiro (National Institute of Genetics. Department of Genomics and Evolutionary Biology) ;
Lawniczak, Mara K. N. (Wellcome Sanger Institute (Cambridge)) ;
Leebens-Mack, James H. (University of Georgia. Department of Plant Biology) ;
Li, Xueyan (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Lindblad-Toh, Kerstin (Uppsala University. Department of Medical Biochemistry & Microbiology) ;
Liu, Xin (Beijing Genomics Institute-Shenzhen) ;
Lopez, Jose V. (Nova Southeastern University. Department of Biological Sciences) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Mazard, Sofhie (Macquarie University. Bioplatforms Australia) ;
Mazet, Jonna (University of California Davis. One Health Institute) ;
Mazzoni, Camila J. (Berlin Center for Genomics in Biodiversity Research) ;
Myers, Eugene W. (Max Planck Institute of Molecular Cell Biology and Genetics (Germany)) ;
O'Neill, Rachel J. (University of Connecticut. Institute for Systems Genomics) ;
Paez, Sadye (The Rockefeller University. Laboratory of the Neurogenetics of Language (USA)) ;
Park, Hyun (Korea University. Division of Biotechnology) ;
Robinson, Gene (University of Illinois at Urbana−Champaign. Department of Entomology) ;
Roquet, Cristina (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Ryder, Oliver A (University of California San Diego. Department of Evolution, Behavior, and Ecology (USA)) ;
Sabir, Jamal S. M. (King Abdulaziz University. Department of Biological Sciences (Saudi Arabia)) ;
Shaffer, Howard Bradley (University of California, Los Angeles. Department of Ecology and Evolutionary Biology) ;
Shank, Timothy M. (Woods Hole Oceanographic Institution) ;
Sherkow, Jacob S. (University of Illinois at Urbana−Champaign. Department of Entomology) ;
Soltis, Pamela (University of Florida. Florida Museum of Natural History) ;
Tang, Boping (Yancheng Teachers University. School of Wetlands (China)) ;
Tedersoo, Leho (University of Tartu. Center of Mycology and Microbiology) ;
Uliano da Silva, Marcela (Wellcome Sanger Institute (Cambridge)) ;
Wang, Kun (Northwestern Polytechnical University. School of Ecology and Environment (China)) ;
Wei, Xiaofeng (Beijing Genomics Institute-Shenzhen) ;
Wetzer, Regina (University of Southern California, Los Angeles. Biological Sciences) ;
Wilson, Julia L. (Wellcome Sanger Institute (Cambridge)) ;
Xu, Xun (Beijing Genomics Institute-Shenzhen) ;
Yang, Huanming (Beijing Genomics Institute-Shenzhen) ;
Yoder, Anne (Duke University, Durham. Department of Biology) ;
Zhang, Guojie (Beijing Genomics Institute-Shenzhen)
2022 - 10.1073/pnas.2115635118
Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Num. 4 (2022) , art. e2115635118
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5.
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32 p, 22.5 MB |
Towards complete and error-free genome assemblies of all vertebrate species
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Rhie, Arang (National Institutes of Health. National Human Genome Research Institute (USA)) ;
McCarthy, Shane A. (University of Cambridge. Department of Genetics (UK)) ;
Fedrigo, Olivier (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Damas, Joana (University of California Davis. The Genome Center (USA)) ;
Formenti, Giulio (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Koren, Sergey (National Institutes of Health. National Human Genome Research Institute (USA)) ;
Uliano da Silva, Marcela (Leibniz Institute for Zoo and Wildlife Research. Department of Evolutionary Genetics (Germany)) ;
Chow, William (Wellcome Trust Sanger Institute (Regne Unit)) ;
Fungtammasan, Arkarachai (DNAnexus Inc. (USA)) ;
Kim, Juwan (Seoul National University. Interdisciplinary Program in Bioinformatics (Republic of Korea)) ;
Lee, Chul (Seoul National University. Interdisciplinary Program in Bioinformatics (Republic of Korea)) ;
Ko, Byung June (Seoul National University. Department of Agricultural Biotechnology (Republic of Korea)) ;
Chaisson, Mark (University of Southern California (USA)) ;
Gedman, Gregory L. (The Rockefeller University. Laboratory of Neurogenetics of Language (USA)) ;
Cantin, Lindsey J. (The Rockefeller University. Laboratory of Neurogenetics of Language (USA)) ;
Thibaud-Nissen, Françoise (National Library of Medicine. National Center for Biotechnology Information (USA)) ;
Haggerty, Leanne (European Bioinformatics Institute. European Molecular Biology Laboratory (UK)) ;
Bista, Iliana (University of Cambridge. Department of Genetics (UK)) ;
Smith, Michelle (Wellcome Trust Sanger Institute (Regne Unit)) ;
Haase, Bettina (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Mountcastle, Jacquelyn (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Winkler, Sylke (Max Planck Institute of Molecular Cell Biology and Genetics (Germany)) ;
Paez, Sadye (The Rockefeller University. Vertebrate Genome Lab (USA)) ;
Howard, Jason (Novogene (USA)) ;
Vernes, Sonja C. (Donders Institute for Brain, Cognition and Behaviour (The Netherlands)) ;
Lama, Tanya M. (University of Massachusetts. Cooperative Fish and Wildlife Research Unit (USA)) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Warren, Wesley (University of Missouri. Bond Life Sciences Center (USA)) ;
Balakrishnan, Christopher N. (East Carolina University. Department of Biology (USA)) ;
Burt, Dave (University of Queensland. UQ Genomics (Australia)) ;
George, Julia M. (Clemson University. Department of Biological Sciences (USA)) ;
Biegler, Matthew T. (The Rockefeller University. Laboratory of Neurogenetics of Language (USA)) ;
Iorns, David (The Genetic Rescue Foundation (New Zealand)) ;
Digby, Andrew (Kākāpō Recovery, Department of Conservation (New Zealand)) ;
Eason, Daryl (Kākāpō Recovery, Department of Conservation (New Zealand)) ;
Robertson, Bruce (University of Otago. Department of Zoology (New Zealand)) ;
Edwards, Taylor (University of Arizona Genetics Core (USA)) ;
Wilkinson, Mark (Natural History Museum. Department of Life Sciences (UK)) ;
Turner, George (Bangor University. School of Natural Sciences (UK)) ;
Meyer, Axel (University of Konstanz. Department of Biology (Germany)) ;
Kautt, Andreas F. (University of Konstanz. Department of Biology (Germany)) ;
Franchini, Paolo (University of Konstanz. Department of Biology (Germany)) ;
Detrich III, H. William (Northeastern University Marine Science Center. Department of Marine and Environmental Sciences (USA)) ;
Svardal, Hannes (University of Antwerp. Department of Biology (Belgium)) ;
Wagner, Maximilian (Karl-Franzens University of Graz. Institute of Biology (Austria)) ;
Naylor, Gavin J. P. (University of Florida. Florida Museum of Natural History (USA)) ;
Pippel, Martin (Max Planck Institute of Molecular Cell Biology and Genetics (Germany)) ;
Malinsky, Milan (University of Basel. Zoological Institute (Switzerland)) ;
Mooney, Mark (Tag.bio (USA)) ;
Simbirsky, Maria (DNAnexus Inc. (USA)) ;
Hannigan, Brett T. (DNAnexus Inc. (USA)) ;
Pesout, Trevor (University of California. UC Santa Cruz Genomics Institute (USA)) ;
Houck, Marlys (San Diego Zoo Global (USA)) ;
Misuraca, Ann (San Diego Zoo Global (USA)) ;
Kingan, Sarah B. (Pacific Biosciences (USA)) ;
Hall, Richard (Pacific Biosciences (USA)) ;
Kronenberg, Zev (Pacific Biosciences (USA)) ;
Sović, Ivan (Pacific Biosciences (USA)) ;
Dunn, Christopher (Pacific Biosciences (USA)) ;
Ning, Zemin (Wellcome Trust Sanger Institute (Regne Unit)) ;
Hastie, Alex (Bionano Genomics (USA)) ;
Lee, Joyce (Bionano Genomics (USA)) ;
Selvaraj, Siddarth (Arima Genomics (USA)) ;
Green, Richard E. (University of California. UC Santa Cruz Genomics Institute (USA)) ;
Putnam, Nicholas H. (Independent Researcher. Santa Cruz (USA)) ;
Gut, Ivo (Centro Nacional de Análisis Genómico. Instituto de Ciencia y Tecnología de Barcelona) ;
Ghurye, Jay (University of Maryland College Park. Department of Computer Science (USA)) ;
Garrison, Erik (University of California. UC Santa Cruz Genomics Institute (USA)) ;
Sims, Ying (Wellcome Trust Sanger Institute (Regne Unit)) ;
Collins, Joanna (Wellcome Trust Sanger Institute (Regne Unit)) ;
Pelan, Sarah (Wellcome Trust Sanger Institute (Regne Unit)) ;
Torrance, James (Wellcome Trust Sanger Institute (Regne Unit)) ;
Tracey, Alan (Wellcome Trust Sanger Institute (Regne Unit)) ;
Wood, Jonathan (Wellcome Trust Sanger Institute (Regne Unit)) ;
Dagnew, Robel E. (University of Southern California (USA)) ;
Guan, Dengfeng (Harbin Institute of Technology. Center for Bioinformatics. School of Computer Science and Technology (China)) ;
London, Sarah E. (University of Chicago. Institute for Mind and Biology. Department of Psychology (USA)) ;
Clayton, David F. (Clemson University. Department of Genetics and Biochemistry (USA)) ;
Mello, Claudio V. (Oregon Health and Science University. Department of Behavioral Neuroscience (USA)) ;
Friedrich, Samantha R. (Oregon Health and Science University. Department of Behavioral Neuroscience (USA)) ;
Lovell, Peter V. (Oregon Health and Science University. Department of Behavioral Neuroscience (USA)) ;
Osipova, Ekaterina (Max Planck Institute for the Physics of Complex Systems (Germany)) ;
Al-Ajli, Farooq O. (Monash University Malaysia. Tropical Medicine and Biology Multidisciplinary Platform (Malaysia)) ;
Secomandi, Simona (University of Milan. Department of Biosciences (Italy)) ;
Kim, Heebal (Seoul National University. Interdisciplinary Program in Bioinformatics (Republic of Korea)) ;
Theofanopoulou, Constantina (The Rockefeller University. Laboratory of Neurogenetics of Language (USA)) ;
Hiller, Michael (Goethe-University. Faculty of Biosciences (Germany)) ;
Zhou, Yang (BGI-Shenzhen (China)) ;
Harris, Robert S. (Pennsylvania State University. Department of Biology (USA)) ;
Makova, Kateryna D. (Pennsylvania State University. Department of Biology (USA)) ;
Medvedev, Paul (Pennsylvania State University. Center for Medical Genomics (USA)) ;
Hoffman, Jinna (National Library of Medicine. National Center for Biotechnology Information (USA)) ;
Masterson, Patrick (National Library of Medicine. National Center for Biotechnology Information (USA)) ;
Clark, Karen (National Library of Medicine. National Center for Biotechnology Information (USA)) ;
Martin, Fergal J. (European Bioinformatics Institute. European Molecular Biology Laboratory (UK)) ;
Howe, Kevin (European Bioinformatics Institute. European Molecular Biology Laboratory (UK)) ;
Flicek, Paul (European Bioinformatics Institute. European Molecular Biology Laboratory (UK)) ;
Walenz, Brian P. (National Institutes of Health. National Human Genome Research Institute (USA)) ;
Kwak, Woori (eGnome, Inc. (Republic of Korea)) ;
Clawson, Hiram (University of California. UC Santa Cruz Genomics Institute (USA)) ;
Diekhans, Mark (University of California. UC Santa Cruz Genomics Institute (USA)) ;
Nassar, Luis (University of California. UC Santa Cruz Genomics Institute (USA)) ;
Paten, Benedict (University of California. UC Santa Cruz Genomics Institute (USA)) ;
Kraus, Robert H. S. (Max Planck Institute of Animal Behavior. Department of Migration (Germany)) ;
Crawford, Andrew J. (Universidad de los Andes. Department of Biological Sciences (Colombia)) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute. Center for Evolutionary Hologenomics (Denmark)) ;
Zhang, Guojie (Chinese Academy of Sciences. Center for Excellence in Animal Evolution and Genetics (China)) ;
Venkatesh, Byrappa (A*STAR. Institute of Molecular and Cell Biology (Singapore)) ;
Murphy, Robert W. (Royal Ontario Museum. Centre for Biodiversity (Canada)) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute) ;
Shapiro, Beth (Howard Hughes Medical Institute (USA)) ;
Johnson, Warren E. (Smithsonian Conservation Biology Institute) ;
Di Palma, Federica (University of East Anglia. Earlham Institute. Department of Biological Sciences (UK)) ;
Teeling, Emma C. (University College Dublin. School of Biology and Environmental Science (Ireland)) ;
Warnow, Tandy (The University of Illinois at Urbana-Champaign. Department of Computer Science (USA)) ;
Graves, Jennifer Marshall (La Trobe University. School of Life Science (Australia)) ;
Ryder, Oliver A. (University of California San Diego. Department of Evolution, Behavior, and Ecology (USA)) ;
Haussler, David (University of California Santa Cruz. Department of Ecology and Evolutionary Biology (USA)) ;
O'Brien, Stephen J. (ITMO University. Laboratory of Genomics Diversity-Center for Computer Technologies (Russian Federation)) ;
Korlach, Jonas (Pacific Biosciences (USA)) ;
Lewin, Harris A. (University of California Davis. John Muir Institute for the Environment (USA)) ;
Howe, Kerstin (Wellcome Trust Sanger Institute (Regne Unit)) ;
Myers, Eugene W. (Max Planck Institute of Molecular Cell Biology and Genetics (Germany)) ;
Durbin, Richard (University of Cambridge. Department of Genetics (UK)) ;
Phillippy, Adam M. (National Institutes of Health. National Human Genome Research Institute (USA)) ;
Jarvis, Erich (The Rockefeller University. Vertebrate Genome Lab (USA))
High-quality and complete reference genome assemblies are fundamental for the application of genomics to biology, disease, and biodiversity conservation. However, such assemblies are available for only a few non-microbial species 1, 2, 3, 4. [...]
2021 - 10.1038/s41586-021-03451-0
Nature, Vol. 592 (April 2021) , p. 737-746
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