Population dynamics and genetic connectivity in recent chimpanzee history
Fontsere, Claudia (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Kuhlwilm, Martin (University of Vienna. Human Evolution and Archaeological Sciences)
Morcillo-Suarez, Carlos (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Alvarez-Estape, Marina (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Lester, Jack D. (Max Planck Institute for Evolutionary Anthropology)
Gratton, Paolo (Università di Roma "Tor Vergata". Dipartimento di Biologia)
Schmidt, Joshua M. (The University of Adelaide. School of Biological Sciences)
Dieguez, Paula (German Centre for Integrative Biodiversity Research (Halle-Jena-Leipzig, Alemanya))
Aebischer, Thierry (University of Fribourg)
Álvarez-Varona, Paula (Jane Goodall Institute Spain and Senegal)
Agbor, Anthony (Max Planck Institute for Evolutionary Anthropology)
Angedakin, Samuel (Max Planck Institute for Evolutionary Anthropology)
Assumang, Alfred K. (Kwame Nkrumah University of Science and Technology. Department of Wildlife and Range Management)
Ayimisin, Emmanuel A. (Max Planck Institute for Evolutionary Anthropology)
Bailey, Emma (Max Planck Institute for Evolutionary Anthropology)
Barubiyo, Donatienne (Max Planck Institute for Evolutionary Anthropology)
Bessone, Mattia (Max Planck Institute for Evolutionary Anthropology)
Carretero-Alonso, Andrea (Fundación Rainfer)
Chancellor, Rebecca (West Chester University. Depts of Anthropology and Sociology and Psychology)
Cohen, Heather (Wild Chimpanzee Foundation)
Danquah, Emmanuel (Kwame Nkrumah University of Science and Technology. Department of Wildlife and Range Management)
Deschner, Tobias (Max Planck Institute for Evolutionary Anthropology)
Dunn, Andrew (Wildlife Conservation Society)
Dupain, Jef (Antwerp Zoo Foundation)
Egbe, Villard E. (Max Planck Institute for Evolutionary Anthropology)
Feliu, Olga (Fundació MONA)
Goedmakers, Annemarie (Chimbo Foundation)
Granjon, Anne-Céline (Max Planck Institute for Evolutionary Anthropology)
Head, Josephine (Max Planck Institute for Evolutionary Anthropology)
Hedwig, Daniela (Cornell University. K. Lisa Yang Center for Conservation)
Hermans, Veerle (Royal Zoological Society of Antwerp)
Hernandez-Aguilar, R. Adriana (Universitat de Barcelona. Departament de Psicologia Social i Psicologia Quantitativa)
Imong, Inaoyom (Wildlife Conservation Society)
Jones, Sorrel (RSPB Centre of Conservation Science)
Junker, Jessica (German Centre for Integrative Biodiversity Research (Halle-Jena-Leipzig, Alemanya))
Kadam, Parag (Greater Mahale Ecosystem Research and Conservation Project)
Kaiser, Mike (Max Planck Institute for Evolutionary Anthropology)
Kambere, Mbangi (Max Planck Institute for Evolutionary Anthropology)
Kambale, Magloire V. (Max Planck Institute for Evolutionary Anthropology)
Kalan, Ammie K. (University of Victoria. Department of Anthropology)
Kienast, Ivonne (Max Planck Institute for Evolutionary Anthropology)
Kujirakwinja, Deo (Wildlife Conservation Society)
Langergraber, Kevin (Arizona State University)
Lapuente, Juan (Max Planck Institute for Evolutionary Anthropology)
Larson, Bradley (Max Planck Institute for Evolutionary Anthropology)
Laudisoit, Anne (Evolutionary Ecology group)
Lee, Kevin (Arizona State University. School of Human Evolution and Social Change)
Llana, Manuel (Jane Goodall Institute Spain and Senegal)
Llorente, Miquel (Universitat de Girona. Departament de Psicologia)
Marrocoli, Sergio (Max Planck Institute for Evolutionary Anthropology)
Morgan, David (Lester E. Fisher Center for the Study and Conservation of Apes)
Mulindahabi, Felix (Wildlife Conservation Society)
Murai, Mizuki (Max Planck Institute for Evolutionary Anthropology)
Neil, Emily (Max Planck Institute for Evolutionary Anthropology)
Nicholl, Sonia (Max Planck Institute for Evolutionary Anthropology)
Nixon, Stuart (Chester Zoo)
Normand, Emma (Wild Chimpanzee Foundation)
Orbell, Chris (Panthera)
Ormsby, Lucy J. (Max Planck Institute for Evolutionary Anthropology)
Pacheco, Liliana (Centres Molina)
Piel, Alex (University College London. Department of Anthropology)
Riera, Laura (Fundació MONA)
Robbins, Martha M. (Max Planck Institute for Evolutionary Anthropology)
Rundus, Aaron (West Chester University. Department of Psychology)
Sanz, Crickette (Wildlife Conservation Society)
Sciaky, Lilah (Max Planck Institute for Evolutionary Anthropology)
Sommer, Volker (Primate Project)
Stewart, Fiona A. (Liverpool John Moores University. School of Biological & Environmental Sciences)
Tagg, Nikki (Royal Zoological Society of Antwerp)
Tédonzong, Luc Roscelin (Royal Zoological Society of Antwerp)
Ton, Els (Chimbo Foundation)
van Schijndel, Joost (Chimbo Foundation)
Vergnes, Virginie (Wild Chimpanzee Foundation)
Wessling, Erin G. (Harvard University. Department of Human Evolutionary Biology)
Willie, Jacob (Ghent University. Department of Biology)
Wittig, Roman M. (Taï Chimpanzee Project)
Yuh, Yisa G. (University of Concordia. Department of Geography, Planning and Environmental Studies)
Yurkiw, Kyle (Max Planck Institute for Evolutionary Anthropology)
Zuberbuehler, Klaus (University of St. Andrews. School of Psychology and Neuroscience)
Hecht, Jochen (Institut de Ciència i Tecnologia de Barcelona)
Vigilant, Linda (Max Planck Institute for Evolutionary Anthropology)
Boesch, Christophe (Max Planck Institute for Evolutionary Anthropology)
Andrés, Aida M. (University College London. Department of Genetics, Evolution and Environment)
Hughes, David A. (University of Bristol. Bristol Medical School)
Kühl, Hjalmar S. (German Centre for Integrative Biodiversity Research (Halle-Jena-Leipzig, Alemanya))
Lizano, Esther (Institut Català de Paleontologia Miquel Crusafont)
Arandjelovic, Mimi (German Centre for Integrative Biodiversity Research (Halle-Jena-Leipzig, Alemanya))
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont)

Date:	2022
Abstract:	Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. Fontsere et al. captured and sequenced chromosome 21 from 828 non-invasively collected chimpanzee samples, providing an extensive catalog of genomic diversity for wild chimpanzee populations. The authors describe patterns of isolation and connectivity between localities and implement a fine-grained geolocalization approach to infer the origin of confiscated chimpanzees.
Grants:	Ministerio de Ciencia e Innovación PRE2018-083966 Agencia Estatal de Investigación CGL2017-82654-P European Commission 864203 Agencia Estatal de Investigación BFU2017-86471-P Agencia Estatal de Investigación CEX2018-000792-M Agència de Gestió d'Ajuts Universitaris i de Recerca 2017/SGR-880 Agència de Gestió d'Ajuts Universitaris i de Recerca 2017/SGR-1040
Note:	Altres ajuts: "la Caixa" Foundation doctoral fellowship program LCF/BQ/DE15/10360006
Note:	Altres ajuts: "la Caixa" Foundation (ID 100010434), fellowship code LCF/BQ/PR19/11700002
Rights:	Aquest document està subjecte a una llicència d'ús Creative Commons. Es permet la reproducció total o parcial, la distribució, i la comunicació pública de l'obra, sempre que no sigui amb finalitats comercials, i sempre que es reconegui l'autoria de l'obra original. No es permet la creació d'obres derivades.
Language:	Anglès
Document:	Article ; recerca ; Versió publicada
Subject:	Chimpanzee ; Non-invasive samples ; Fecal samples ; Hybridization capture ; Population genetics ; Conservation genomics ; Geolocalization ; Population dynamics ; Chimpanzee demography
Published in:	Cell Genomics, Vol. 2, Issue 6 (June 2022) , art. 100133, ISSN 2666-979X

DOI: 10.1016/j.xgen.2022.100133
PMID: 35711737

39 p, 4.4 MB

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Research literature > UAB research groups literature > Research Centres and Groups (research output) > Experimental sciences > Institut Català de Paleontologia Miquel Crusafont (ICP)
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