Home > Search Results: Burdukiewicz, Michał
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Articles, 5 records found
Articles 5 records found  
1.
10 p, 1.5 MB Prediction of protein subplastid localization and origin with PlastoGram / Sidorczuk, Katarzyna (University of Wrocław) ; Gagat, Przemysław (University of Wrocław) ; Kała, Jakub (Warsaw University of Technology) ; Nielsen, Henrik (Technical University of Denmark. Department of Health Technology) ; Pietluch, Filip (University of Wrocław) ; Mackiewicz, Paweł (University of Wrocław) ; Burdukiewicz, Michał (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Due to their complex history, plastids possess proteins encoded in the nuclear and plastid genome. Moreover, these proteins localize to various subplastid compartments. Since protein localization is associated with its function, prediction of subplastid localization is one of the most important steps in plastid protein annotation, providing insight into their potential function. [...]
2023 - 10.1038/s41598-023-35296-0
Scientific reports, Vol. 13 (May 2023) , art. 8365  
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2.
12 p, 4.6 MB Genomic characterization of enterohaemolysin-encoding haemolytic Escherichia coli of animal and human origin / Sidorczuk, Katarzyna (University of Wrocław) ; Aleksandrowicz, Adrianna (Wrocław University of Environmental and Life Sciences) ; Burdukiewicz, Michał (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Kingsley, Robert A. (Quadram Institute Biosciences) ; Kolenda, Rafał (Quadram Institute Biosciences)
Enterohaemolysin (Ehx) and alpha-haemolysin are virulence-associated factors (VAFs) causing the haemolytic phenotype in . It has been shown that chromosomally and plasmid-encoded alpha-haemolysin are characteristic of specific pathotypes, virulence-associated factors and hosts. [...]
2023 - 10.1099/mgen.0.000999
Microbial Genomics, Vol. 9, Issue 4 (April 2023)  
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3.
6 p, 1.5 MB AmyloGraph : a comprehensive database of amyloid-amyloid interactions / Burdukiewicz, Michał (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Rafacz, Dominik (Warsaw University of Technology) ; Barbach, Agnieszka (Wrocław University of Science and Technology) ; Hubicka, Katarzyna (Wrocław University of Science and Technology) ; Bąkała, Laura (Warsaw University of Technology) ; Lassota, Anna (University of Birmingham) ; Stecko, Jakub (Wrocław Medical University) ; Szymańska, Natalia (Wrocław Medical University) ; Wojciechowski, Jakub W. (Wrocław University of Science and Technology) ; Kozakiewicz, Dominika (Hirszfeld Institute of Immunology and Experimental Therapy) ; Szulc, Natalia (Wrocław University of Science and Technology) ; Chilimoniuk, Jarosław (University of Wrocław) ; Jęśkowiak, Izabela (Wroclaw Medical University) ; Gąsior-Głogowska, Marlena (Wrocław University of Science and Technology) ; Kotulska, Małgorzata (Wrocław University of Science and Technology)
Information about the impact of interactions between amyloid proteins on their fibrillization propensity is scattered among many experimental articles and presented in unstructured form. We manually curated information located in almost 200 publications (selected out of 562 initially considered), obtaining details of 883 experimentally studied interactions between 46 amyloid proteins or peptides. [...]
2022 - 10.1093/nar/gkac882
Nucleic acids research, Vol. 51 (october 2022) , p. D352-D357  
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4.
8 p, 1.1 MB The dynamic landscape of peptide activity prediction / Bárcenas, Oriol (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Pintado-Grima, Carlos (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Sidorczuk, Katarzyna (University of Wrocław) ; Teufel, Felix (University of Copenhagen) ; Nielsen, Henrik (Technical University of Denmark) ; Ventura, Salvador (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Burdukiewicz, Michał (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Peptides are known to possess a plethora of beneficial properties and activities: antimicrobial, anticancer, anti-inflammatory or the ability to cross the blood-brain barrier are only a few examples of their functional diversity. [...]
2022 - 10.1016/j.csbj.2022.11.043
Computational and Structural Biotechnology Journal, Vol. 20 (November 2022) , p. 6526-6533  
Detailed record - Creative Commons
5.
12 p, 1.5 MB Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data / Sidorczuk, Katarzyna (University of Wrocław) ; Gagat, Przemysław (University of Wrocław) ; Pietluch, Filip (University of Wrocław) ; Kała, Jakub (Warsaw University of Technology) ; Rafacz, Dominik (Warsaw University of Technology) ; Bąkała, Laura (Warsaw University of Technology) ; Słowik, Jadwiga (Warsaw University of Technology) ; Kolenda, Rafał (Wrocław University of Environmental and Life Sciences) ; Rödiger, Stefan (Brandenburg University of Technology Cottbus-Senftenberg) ; Fingerhut, Legana C H W (James Cook University. Department of Molecular and Cell Biology) ; Cooke, Ira R (James Cook University. Department of Molecular and Cell Biology) ; Mackiewicz, Paweł (University of Wrocław) ; Burdukiewicz, Michał (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Antimicrobial peptides (AMPs) are a heterogeneous group of short polypeptides that target not only microorganisms but also viruses and cancer cells. Due to their lower selection for resistance compared with traditional antibiotics, AMPs have been attracting the ever-growing attention from researchers, including bioinformaticians. [...]
2022 - 10.1093/bib/bbac343
Briefings in Bioinformatics, Vol. 23, Issue 5 (September 2022) , art. bbac343  
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