2025-04-04
04:44 |
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21 p, 2.6 MB |
History and genetic diversity of African sheep : Contrasting phenotypic and genomic diversity
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Da Silva, Anne (University of Limoges) ;
Ahbara, Abulgasim (Misurata University) ;
Baazaoui, Imen (Centre de Recerca en Agrigenòmica) ;
Jemaa, Slim Ben (University of Carthage) ;
Cao, Yinhong (Chinese Academy of Sciences. Institute of Zoology) ;
Ciani, Elena (University Bari "Aldo Moro") ;
Dzomba, Edgar Farai (University of KwaZulu-Natal) ;
Evans, Linda (Macquarie University) ;
Gootwine, Elisha (Volcani Center. Institute of Animal Science) ;
Hanotte, Olivier (The University of Nottingham) ;
Harris, Laura (Macquarie University) ;
Li, Meng-Hua (China Agricultural University) ;
Mastrangelo, Salvatore (University of Palermo) ;
Missohou, Ayao (Inter-State School of Veterinary Science and Medicine (EISMV)) ;
Molotsi, Annelin (Stellenbosch University) ;
Muchadeyi, Farai C. (Agricultural Research Council (South Africa)) ;
Mwacharo, Joram M. (International Center for Agricultural Research in the Dry Areas (ICARDA)) ;
Tallet, Gaëlle (University of Paris 1) ;
Vernus, Pascal (Ecole Pratique Des Hautes Etudes) ;
Hall, Stephen (Estonian University of Life Sciences) ;
Lenstra, Johannes A. (Utrecht University)
Domesticated sheep have adapted to contrasting and extreme environments and continue to play important roles in local community-based economies throughout Africa. Here we review the Neolithic migrations of thin-tailed sheep and the later introductions of fat-tailed sheep into eastern Africa. [...]
2024 -  10.1111/age.13488
Animal genetics, Vol. 56, Issue 1 (February 2025) , art. e13488
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2025-03-30
03:35 |
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10 p, 1.6 MB |
Gene co-expression network analysis for porcine intramuscular fatty acid composition
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Sebastià, Cristina (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Gallopin, Mélina (Université Paris-Saclay) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries) ;
Estellé, Jordi (Université Paris-Saclay) ;
Valdés Hernández, Jesús (Centre de Recerca en Agrigenòmica) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Crespo-Piazuelo, Daniel (Institut de Recerca i Tecnologia Agroalimentàries) ;
Folch, Josep M. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
In pigs, meat quality depends markedly on the fatty acid (FA) content and composition of the intramuscular fat, which is partly determined by the gene expression in this tissue. The aim of this work was to identify the link between muscle gene expression and its FA composition. [...]
2024 - 10.1016/j.animal.2024.101259
Animal, Vol. 18, Issue 9 (September 2024) , art. 101259
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2025-03-30
03:35 |
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18 p, 1.9 MB |
Identification of genomic regions associated with fatty acid metabolism across blood, liver, backfat and muscle in pigs
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Liu, Junhui (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Sebastià, Cristina (Centre de Recerca en Agrigenòmica) ;
Jové-Juncà, Teodor (Institut de Recerca i Tecnologia Agroalimentàries) ;
Quintanilla, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ;
González-Rodríguez, Olga (Institut de Recerca i Tecnologia Agroalimentàries) ;
Passols Manzano, Magí (Centre de Recerca en Agrigenòmica) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Sánchez Bonastre, Armando (Centre de Recerca en Agrigenòmica) ;
Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries) ;
Folch, Josep M (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Background: The composition and distribution of fatty acids (FA) are important factors determining the quality, flavor, and nutrient value of meat. In addition, FAs synthesized in the body participate in energy metabolism and are involved in different regulatory pathways in the form of signaling molecules or by acting as agonist or antagonist ligands of different nuclear receptors. [...]
2024 - 10.1186/s12711-024-00933-3
Genetics, selection, evolution, Vol. 56 (September 2024) , art. 66
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2025-03-30
03:35 |
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18 p, 1.9 MB |
Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis
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Valdés Hernández, Jesús (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Folch, Josep M. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Crespo-Piazuelo, Daniel (Institut de Biologie Structurale. Laboratoire de Cristallographie Macromoléculaire) ;
Passols Manzano, Magí (Centre de Recerca en Agrigenòmica) ;
Sebastià, Cristina (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Criado Mesas, Lourdes (Centre de Recerca en Agrigenòmica) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Ramayo-Caldas, Yuliaxis (Institut de Biologie Structurale. Laboratoire de Cristallographie Macromoléculaire)
Background: Intramuscular fat (IMF) content and its fatty acid (FA) composition are typically controlled by several genes, each with a small effect. In the current study, to pinpoint candidate genes and putative regulators involved in FA composition, we performed a multivariate integrative analysis between intramuscular FA and transcriptome profiles of porcine longissimus dorsi (LD) muscle. [...]
2024 - 10.1186/s12711-024-00882-x
Genetics, selection, evolution, Vol. 56 (2024) , art. 12
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2025-03-12
05:39 |
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12 p, 628.9 KB |
Exon-intron split analysis reveals posttranscriptional regulatory signals induced by high and low n-6/n-3 polyunsaturated fatty acid ratio diets in piglets
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Manaig, Yron Joseph (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Mármol-Sánchez, Emilio (Stockholm University. Department of Molecular Biosciences) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Esteve-Codina, Anna (Institut de Ciència i Tecnologia de Barcelona) ;
Sandrini, Silvia (Università degli Studi di Milano. Department of Veterinary Medicine and Animal Sciences) ;
Savoini, Giovanni (Università degli Studi di Milano. Department of Veterinary Medicine and Animal Sciences) ;
Agazzi, Alessandro (Università degli Studi di Milano. Department of Veterinary Medicine and Animal Sciences) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Folch, Josep M (Centre de Recerca en Agrigenòmica)
Polyunsaturated fatty acids (PUFA), such as omega-6 (n-6) and omega-3 (n-3), play a vital role in nutrient metabolism, inflammatory response, and gene regulation. microRNAs (miRNA), which can potentially degrade targeted messenger RNAs (mRNA) and/or inhibit their translation, might play a relevant role in PUFA-related changes in gene expression. [...]
2023 - 10.1093/jas/skad271
Journal of animal science, Vol. 101 (August 2023) , art. skad271
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2025-03-12
05:39 |
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12 p, 2.0 MB |
Improved prime editing allows for routine predictable gene editing in Physcomitrium patens
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Perroud, Pierre-François (Université Paris-Saclay) ;
Guyon-Debast, Anouchka (Université Paris-Saclay) ;
Casacuberta i Suñer, Josep M 1962- (Centre de Recerca en Agrigenòmica) ;
Paul, Wyatt (Centre de Recherche de Chappes) ;
Pichon, Jean-Philippe (Centre de Recherche de Chappes) ;
Comeau, David (Centre de Recherche de Chappes) ;
Nogué, Fabien (Université Paris-Saclay)
Efficient and precise gene editing is the gold standard of any reverse genetic study. The recently developed prime editing approach, a modified CRISPR/Cas9 [clustered regularly interspaced palindromic repeats (CRISPR)/CRISPR-associated protein] editing method, has reached the precision goal but its editing rate can be improved. [...]
2023 - 10.1093/jxb/erad189
Journal of experimental botany, Vol. 74, Issue 19 (October 2023) , p. 6176-6187
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2025-03-12
05:39 |
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13 p, 2.0 MB |
The haplotype-resolved T2T reference genome highlights structural variation underlying agronomic traits of melon
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Li, Guoli (China Agricultural University. College of Horticulture) ;
Tang, Lingli (Chinese Academy of Agricultural Sciences. Zhongyuan Research Center) ;
He, Yuhua (Chinese Academy of Agricultural Sciences. National Nanfan Research Institute) ;
Xu, Yongyang (Chinese Academy of Agricultural Sciences. National Nanfan Research Institute) ;
Bendahmane, Abdelhafid (University of Paris-Saclay. Institute of Plant Sciences Paris-Saclay) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Lin, Tao (China Agricultural University. College of Horticulture) ;
Zhao, Guangwei (Chinese Academy of Agricultural Sciences. Zhongyuan Research Center)
Melon (Cucumis melo L. ) is an important vegetable crop that has an extensive history of cultivation. However, the genome of wild and semi-wild melon types that can be used for the analysis of agronomic traits is not yet available. [...]
2023 - 10.1093/hr/uhad182
Horticulture research, Vol. 10, Issue 10 (October 2023) , art. uhad182
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2025-03-12
05:39 |
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11 p, 7.5 MB |
Almond population genomics and non-additive GWAS reveal new insights into almond dissemination history and candidate genes for nut traits and blooming time
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Pérez de los Cobos, Felipe (Centre de Recerca en Agrigenòmica) ;
Coindre, Eva (Institut National de Recherche sur l'Agriculture, l'Alimentation et l'Environnement) ;
Dlalah, Naima (Institut National de Recherche sur l'Agriculture, l'Alimentation et l'Environnement) ;
Quilot-Turion, Bénédicte (Institut National de Recherche sur l'Agriculture, l'Alimentation et l'Environnement) ;
Batlle, Ignasi (Institut de Recerca i Tecnologia Agroalimentàries) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Eduardo, Iban (Centre de Recerca en Agrigenòmica) ;
Duval, Henri (Institut National de Recherche sur l'Agriculture, l'Alimentation et l'Environnement)
Domestication drastically changed crop genomes, fixing alleles of interest and creating different genetic populations. Genome-wide association studies (GWASs) are a powerful tool to detect these alleles of interest (and so QTLs). [...]
2023 - 10.1093/hr/uhad193
Horticulture research, Vol. 10, Issue 10 (October 2023) , art. uhad193
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2025-03-12
05:39 |
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2025-02-27
12:43 |
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16 p, 6.2 MB |
At the core of salinity : Divergent transcriptomic responses to neutral and alkaline salinity in Arabidopsis thaliana
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Almira, Maria Jose (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Busoms, Silvia (Centre de Recerca en Sanitat Animal) ;
Pérez-Martín, Laura (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Escolà Oliva, Glòria (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
López-Valiñas, Álvaro (Centre de Recerca en Sanitat Animal) ;
Garcia-Molina, Antonio (Centre de Recerca en Agrigenòmica) ;
Llugany i Ollé, Mercè (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Poschenrieder, Charlotte (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia)
In the context of current climate change, alkaline salinity is increasingly challenging crop yields, especially in arid and semiarid regions. Alkaline salinity is more detrimental to plant performance than neutral salinity and tolerance to neutral salinity may not confer tolerance to alkaline salinity. [...]
2024 - 10.1016/j.envexpbot.2024.105982
Environmental and experimental botany, Vol. 228, Part A (December 2024) , art. 105982
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