CRAG (Centre de Recerca en Agrigenòmica)

El CRAG està dedicat a la recerca capdavantera en les bases moleculars de caràcters genètics d'interès en plantes i en animals de granja i en les aplicacions de les aproximacions moleculars per al desenvolupament d'espècies importants per a l'agricultura i per a la producció d'aliments. La recerca al CRAG s'estén des de la ciència bàsica fins als estudis aplicats en estreta col·laboració amb la indústria.

 

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Darreres entrades:
2018-09-19
11:16
12 p, 786.7 KB Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles / Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ; Quintanilla Aguado, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ; Castelló, Anna (Centre de Recerca en Agrigenòmica) ; González Prendes, Rayner (Centre de Recerca en Agrigenòmica) ; Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Cánovas Tienda, Ángela (University of Guelph. Department of Animal Biosciences)
Background: the identification of genes differentially expressed in the skeletal muscle of pigs displaying distinct growth and fatness profiles might contribute to identify the genetic factors that influence the phenotypic variation of such traits. [...]
2018 - 10.1186/s12864-018-4515-2
BMC genomics, Vol. 19 Núm. 145 (2018)  
2018-09-19
11:06
13 p, 3.1 MB Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds / Naval-Sanchez, Marina (CSIRO. Agriculture and Food) ; Nguyen, Quan (CSIRO. Agriculture and Food) ; McWilliam, Sean (CSIRO. Agriculture and Food) ; Porto-Neto, Laercio R. (CSIRO. Agriculture and Food) ; Tellam, Ross (CSIRO. Agriculture and Food) ; Vuocolo, Tony (CSIRO. Agriculture and Food) ; Reverter, Antonio (CSIRO. Agriculture and Food) ; Pérez Enciso, Miguel (Centre de Recerca en Agrigenòmica) ; Brauning, Rudiger (AgResearch Ltd. Invermay Agricultural Centre) ; Clarke, Shannon (AgResearch Ltd. Invermay Agricultural Centre) ; McCulloch, Alan (AgResearch Ltd. Invermay Agricultural Centre) ; Zamani, Wahid (Tarbiat Modares University. Department of Environmental Sciences) ; Naderi, Saeid (University of Guilan. Natural Resources Faculty) ; Rezaei, Hamid Reza (Gorgan University of Agricultural Sciences and Natural Resources. Environmental Science Department) ; Pompanon, Francois (Université Grenoble Alpes. Laboratoire d’Ecologie Alpine) ; Taberlet, Pierre (Université Grenoble Alpes. Laboratoire d’Ecologie Alpine) ; Worley, Kim C. (Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics) ; Gibbs, Richard A. (Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics) ; Muzny, Donna M. (Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics) ; Jhangiani, Shalini N. (Baylor College of Medicine. Human Genome Sequencing Center. Department of Human and Molecular Genetics) ; Cockett, Noelle (Utah State University) ; Daetwyler, Hans (La Trobe University. School of Applied Systems Biology) ; Kijas, James (CSIRO. Agriculture and Food)
Domestication fundamentally reshaped animal morphology, physiology and behaviour, offering the opportunity to investigate the molecular processes driving evolutionary change. Here we assess sheep domestication and artificial selection by comparing genome sequence from 43 modern breeds (Ovis aries) and their Asian mouflon ancestor (O. [...]
2018 - 10.1038/s41467-017-02809-1
Nature communications, Vol. 9 Núm. 859 (2018)  
2018-09-18
12:19
The circadian clock sets the time of DNA replication licensing to regulate growth in Arabidopsis / Fung, Jorge (Centre de Recerca en Agrigenòmica) ; Lee, Kyounghee (Sungkyunkwan University. Department of Biological Sciences) ; Seo, Pil Joon (Sungkyunkwan University. Department of Biological Sciences) ; Polyn, Stefanie (Universiteit Gent. Department of Plant Biotechnology and Bioinformatics) ; De Veylder, Lieven (Universiteit Gent. Department of Plant Biotechnology and Bioinformatics) ; Mas, Paloma (Centre de Recerca en Agrigenòmica)
The circadian clock and cell cycle as separate pathways have been well documented in plants. Elucidating whether these two oscillators are connected is critical for understanding plant growth. We found that a slow-running circadian clock decelerates the cell cycle and, conversely, a fast clock speeds it up. [...]
2018 - 10.1016/j.devcel.2018.02.022
Developmental Cell, Vol. 45, issue 1 (April 2018) , p. 101-113  
2018-09-18
12:07
Autophagy-related approaches for improving nutrient use efficiency and crop yield protection / Avin-Wittenberg, Tamar (Hebrew University of Jerusalem. Department of Plant and Environmental Sciences) ; Baluška, Frantisek (Universität Bonn. Institute of Cellular and Molecular Botany) ; Bozhkov, Peter V. (Linnean Center for Plant Biology in Uppsala) ; Elander, Pernilla H. (Linnean Center for Plant Biology in Uppsala) ; Fernie, Alisdair R. (Max-Planck-Institut für Molekulare Pflanzenphysiologie) ; Galili, Gad (Weizmann Institute of Science. Department of Plant and Environmental Sciences) ; Hassan, Ammar (Universität Bonn. Institute of Cellular and Molecular Botany) ; Hofius, Daniel (Linnean Center for Plant Biology in Uppsala) ; Isono, Erika (Universität Konstanz. Department of Biology) ; Le Bars, Romain (Université Paris Saclay. Institut de biologie intégrative de la cellule) ; Masclaux-Daubresse, Céline (INRA-AgroParisTech) ; Minina, Elena A. (Linnean Center for Plant Biology in Uppsala) ; Peled-Zehavi, Hadas (Department of Plant and Environmental Sciences) ; Coll, Núria (Centre de Recerca en Agrigenòmica) ; Sandalio, Luisa M (Estación Experimental del Zaidín.1 Departmento de Bioquímica, Biología Celular y Molecular de Plantas) ; Satiat-Jeunemaitre, Béatrice (Université Paris Saclay. Institut de biologie intégrative de la cellule) ; Sirko, Agnieszka (Instytut Biochemii i Biofizyki Polskiej Akademii Nauk) ; Testillano, Pilar S. (Consejo Superior de Investigaciones Científicas. Centro de Investigacions Biológicas. Pollen biotechnology of crop plants) ; Batoko, Henri (Université Catholique de Louvain, Institute of Life Sciences)
Autophagy is a eukaryotic catabolic pathway essential for growth and development. In plants, it is activated in response to environmental cues or developmental stimuli. However, in contrast to other eukaryotic systems, we know relatively little regarding the molecular players involved in autophagy and the regulation of this complex pathway. [...]
2018 - 10.1093/jxb/ery069
Journal of experimental botany, Vol. 69, No. 6 (March 2018) , p. 1335–1353  
2018-09-18
11:46
Circadian waves of transcriptional repression shape PIF-regulated photoperiod-responsive growth in Arabidopsis / Martin, Guiomar (Centre de Recerca en Agrigenòmica) ; Rovira, Arnau (Centre de Recerca en Agrigenòmica) ; Veciana, Nil (Centre de Recerca en Agrigenòmica) ; Soy, Judit (Centre de Recerca en Agrigenòmica) ; Toledo-Ortiz, Gabriela (Lancaster Environment Center) ; Gommers, Charlotte M.M. (Centre de Recerca en Agrigenòmica) ; Boix, Marc (Centre de Recerca en Agrigenòmica) ; Henriques, Rossana (Centre de Recerca en Agrigenòmica) ; Minguet, Eugenio G. (Universitat Politècnia de València. Instituto de Biología Molecular y Celular de Plantas) ; Alabadí, David (Universitat Politècnia de València. Instituto de Biología Molecular y Celular de Plantas) ; Halliday, Karen J. (The University of Edinburgh) ; Leivar, Pablo (Centre de Recerca en Agrigenòmica) ; Monte Collado, Elena (Centre de Recerca en Agrigenòmica)
Plants coordinate their growth and development with the environment through integration of circadian clock and photosensory pathways. In Arabidopsis thaliana, rhythmic hypocotyl elongation in short days (SD) is enhanced at dawn by the basic-helix-loop-helix (bHLH) transcription factors PHYTOCHROME-INTERACTING FACTORS (PIFs) directly inducing expression of growth-related genes [1-6]. [...]
2018 - 10.1016/j.cub.2017.12.021
Current biology, Vol. 28, issue 2 (Jan. 2018) , p. 311-318  
2018-09-18
11:26
14 p, 2.1 MB Seedling establishment : a a dimmer switch-regulated process between dark and light signaling / Gommers, Charlotte M.M. (Centre de Recerca en Agrigenòmica) ; Monte Collado, Elena (Centre de Recerca en Agrigenòmica)
By being exquisitely sensitive to their light surroundings, plants are able to continuously adjust their growth to optimize fitness. Darkness is an important cue for plants and a time when they actively grow and develop through regulation of the appropriate gene networks and biochemical changes. [...]
2018 - 10.1104/pp.17.01460
Plant physiology, Vol. 176 (Feb. 2018) , p. 1061–1074  
2018-09-18
11:10
The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution / Lang, Daniel (Helmholtz Center Munich. Plant Genome and Systems Biology) ; Ullrich, Kristian K. (University of Marburg. Faculty of Biology) ; Murat, Florent (Institut national de la recherche agronomique. UMR 1095 Genetics. Diversity and Ecophysiology of Cereals) ; Fuchs, Jorg (Leibniz Institute of Plant Genetics and Crop Plant Research) ; Jenkins, Jerry (HudsonAlpha Institute for Biotechnology) ; Haas, Fabian B. (University of Marburg. Faculty of Biology) ; Piednoel, M. (Max Planck Institute for Plant Breeding Research) ; Gundlach, H. (Helmholtz Center Munich. Plant Genome and Systems Biology) ; Van Bel, M. (VIB-UGent Center for Plant Systems Biology) ; Meyberg, R. (University of Marburg. Faculty of Biology) ; Vives, Cristina (Centre de Recerca en Agrigenòmica) ; Morata, Jordi (Centre de Recerca en Agrigenòmica) ; Symeonidi, Aikaterini (University of Marburg. Faculty of Biology) ; Hiss, Manuel (University of Marburg. Faculty of Biology) ; Muchero, Wellington (Oak Ridge National Laboratory. Biosciences Division) ; Kamisugi, Yasuko (University of Leeds. Centre for Plant Sciences) ; Saleh, Omar (University of Freiburg. Faculty of Biology) ; Blanc, Guillaume (Aix-Marseille Université. Structural and Genomic Information Laboratory) ; Decker, Eva L. (University of Freiburg. Faculty of Biology) ; van Gessel, Nico (University of Freiburg. Faculty of Biology) ; Grimwood, Jane (HudsonAlpha Institute for Biotechnology) ; Hayes, Richard D. (DOE Joint Genome Institute) ; Graham, Sean W. (University of British Columbia. Department of Botany) ; Gunter, Lee E. (Oak Ridge National Laboratory. Biosciences Division) ; McDaniel, Stuart F. (University of Florida. Department of Biology) ; Hoernstein, Sebastian N.W. (University of Freiburg. Faculty of Biology) ; Larsson, Anders (Uppsala University. Evolutionary Biology Centre) ; Li, Fay-Wei (Boyce Thompson Institute) ; Perroud, Pierre-François (University of Marburg. Faculty of Biology) ; Phillips, Jeremy (DOE Joint Genome Institute) ; Ranjan, Priya (Oak Ridge National Laboratory) ; Rokshar, Daniel S. (DOE Joint Genome Institute) ; Rothfels, Carl J. (University of California. Department of Integrative Biology) ; Schneider, Lucas (University of Marburg. Faculty of Biology) ; Shu, Shengqiang (DOE Joint Genome Institute) ; Stevenson, Dennis W. (New York Botanical Garden) ; Thümmler, Fritz (Vertis Biotechnologie AG) ; Tillich, Michael (Max Planck Institute of Molecular Plant Physiology) ; Villarreal Aguilar, Juan C. (Université Laval. Department of Biology) ; Widiez, Thomas (University of Geneva. Department of Plant Biology) ; Wong, Gane Ka-Shu (University of Alberta. Department of Biological Sciences) ; Wymore, Ann (Oak Ridge National Laboratory) ; Zhang, Yong (Shenzhen Huahan Gene Life Technology Co. Ltd) ; Zimmer, Aandreas D. (University of Freiburg. Faculty of Biology) ; Quatrano, Ralph S. (Washington University. Department of Biology) ; Mayer, Klaus F. X. (Technical University Munich) ; Goodstein, David (DOE Joint Genome Institute) ; Casacuberta, J.M. (Centre de Recerca en Agrigenòmica) ; Vandepoele, Klaas (Ghent University. Department of Plant Biotechnology and Bioinformatics) ; Reski, Ralph (University of Freiburg. Faculty of Biology) ; Cuming, Andrew C. (University of Leeds. Faculty of Biological Sciences) ; Tuskan, Gerald A. (Oak Ridge National Laboratory. Biosciences Division) ; Maumus, Florian (Institut National de la Recherche Agronomique . Unité de Recherche Génomique Info) ; Salse, Jerome (Institut national de la recherche agronomique. UMR 1095 Genetics. Diversity and Ecophysiology of Cereals) ; Schmutz, Jeremy (DOE Joint Genome Institute) ; Rensing, Stefan A. (University of Freiburg. BIOSS Centre for Biological Signalling Studies)
The draft genome of the moss model, Physcomitrella patens, comprised approximately 2000 unordered scaffolds. In order to enable analyses of genome structure and evolution we generated a chromosome-scale genome assembly using genetic linkage as well as (end) sequencing of long DNA fragments. [...]
2018 - 10.1111/tpj.13801
Plant journal, Vol. 93, issue 3 (Feb. 2018) , p. 515-533  
2018-09-18
07:33
26 p, 1.1 MB Magnetic bead/gold nanoparticle double-labeled primers for electrochemical detection of isothermal amplified Leishmania DNA / De la Escosura Muñiz, Alfredo (Institut Català de Nanociència i Nanotecnologia) ; Baptista Pires, Luis Miguel (Institut Català de Nanociència i Nanotecnologia) ; Serrano, Lorena (Vetgenomics) ; Altet, Laura (Vetgenomics) ; Francino Martí, Olga (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Sánchez, Armand (Centre de Recerca en Agrigenòmica) ; Merkoçi, Arben (Institut Català de Nanociència i Nanotecnologia)
A novel methodology for the isothermal amplification of Leishmania DNA using labeled primers combined with the advantages of magnetic purification/preconcentration and the use of gold nanoparticle (AuNP) tags for the sensitive electrochemical detection of such amplified DNA is developed. [...]
2016 - 10.1002/smll.201502350
Small, Vol. 12, issue 2 (Jan. 2016) , p. 205-213  
2018-08-06
04:03
13 p, 2.8 MB Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants / Bundó Barberà, Mireia (Centre de Recerca en Agrigenòmica) ; Coca López, María (Centre de Recerca en Agrigenòmica)
OsCPK10 mediates drought tolerance and blast disease resistance in rice plants by enhancing their reactive oxygen species scavenging capacity and so reducing oxidative damage associated with both stresses. [...]
2017 - 10.1093/jxb/erx145
Journal of Experimental Botany, Vol. 68, Num. 11 (May 2017) , p. 2963-2975  
2018-07-19
05:05
7 p, 480.4 KB Involucrant a l'alumnat de primària en una pràctica científica autèntica : el taller Plantes Mutants / Tena Gallego, Èlia (Universitat Autònoma de Barcelona. Centre de Recerca per a l'Educació Científica i Matemàtica) ; Garrido Espeja, Anna (Universitat Autònoma de Barcelona. Centre de Recerca per a l'Educació Científica i Matemàtica) ; Babot, Zoila (Centre de Recerca en Agrigenòmica)
En els últims anys ha anat creixen el nombre d'iniciatives que estableixen col·laboracions entre alumnat i científics professionals. El present article, ofereix un exemple de taller d'aquest tipus que involucra a alumnat de 5è i 6è de primària en Pràctiques Científiques anàlogues a les dels científics del CRAG. [...]
In the last years, the number of collaborative work initiatives between children and professional researchers has been increasing. This article offers an example of a workshop that involves 9 to 12-year-old children in "real" scientific practices similar to what professional researchers do at CRAG. [...]

2018
Ciències : revista del professorat de ciències de primària i secundària, Núm. 35 (2018) , p. 2-8 (Experiències didàctiques i treballs pràctics)