CRAG (Centre de Recerca en Agrigenòmica)

El CRAG està dedicat a la recerca capdavantera en les bases moleculars de caràcters genètics d'interès en plantes i en animals de granja i en les aplicacions de les aproximacions moleculars per al desenvolupament d'espècies importants per a l'agricultura i per a la producció d'aliments. La recerca al CRAG s'estén des de la ciència bàsica fins als estudis aplicats en estreta col·laboració amb la indústria.

  • Articles de recerca
  • Articles de divulgació
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  • Llibres i capítols de llibre

    Estadístiques d'ús Els més consultats
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    12 p, 2.1 MB On the holobiont 'predictome' of immunocompetence in pigs / Calle-García, Joan (Centre de Recerca en Agrigenòmica) ; Ramayo-Caldas, Yuliaxis (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ; Zingaretti, Laura M. (Centre de Recerca en Agrigenòmica) ; Quintanilla, Raquel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ; Ballester Devis, Maria (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
    Gut microbial composition plays an important role in numerous traits, including immune response. Integration of host genomic information with microbiome data is a natural step in the prediction of complex traits, although methods to optimize this are still largely unexplored. [...]
    2023 - 10.1186/s12711-023-00803-4
    Genetics, selection, evolution, Vol. 55 (may 2023)  
    16 p, 1.4 MB Identifying miRNA-mRNA regulatory networks on extreme n-6/n-3 polyunsaturated fatty acid ratio expression profiles in porcine skeletal muscle / Manaig, Yron Joseph (Università degli Studi di Milano. Department of Veterinary Medicine and Animal Sciences) ; Criado Mesas, Lourdes (Centre de Recerca en Agrigenòmica) ; Esteve-Codina, Anna (Centre de Regulació Genòmica) ; Mármol-Sánchez, Emilio (Centre for Palaeogenetics) ; Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ; Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Folch, Josep M. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
    Omega-3 (n-3) and omega-6 (n-6) polyunsaturated fatty acids (PUFAs) are essential fatty acids with antagonistic inflammatory functions that play vital roles in metabolic health and immune response. Current commercial swine diets tend to over-supplement with n-6 PUFAs, which may increase the likelihood of developing inflammatory diseases and affect the overall well-being of the animals. [...]
    2023 - 10.1371/journal.pone.0283231
    PloS one, Vol. 18 (may 2023)  
    16 p, 2.7 MB An efficient CRISPR-Cas9 enrichment sequencing strategy for characterizing complex and highly duplicated genomic regions : A case study in the Prunus salicina LG3-MYB10 genes cluster / Fiol, Arnau (Centre de Recerca en Agrigenòmica) ; Jurado-Ruiz, Federico (Centre de Recerca en Agrigenòmica) ; López-Girona, Elena (The New Zealand Institute for Plant and Food Research Limited (Plant & Food Research)) ; Aranzana, Maria José (Institut de Recerca i Tecnologia Agroalimentàries)
    Background: Genome complexity is largely linked to diversification and crop innovation. Examples of regions with duplicated genes with relevant roles in agricultural traits are found in many crops. In both duplicated and non-duplicated genes, much of the variability in agronomic traits is caused by large as well as small and middle scale structural variants (SVs), which highlights the relevance of the identification and characterization of complex variability between genomes for plant breeding. [...]
    2022 - 10.1186/s13007-022-00937-4
    Plant methods, Vol. 18 (August 2022) , art. 105  
    19 p, 1.3 MB A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors / Tomaž, Špela (Jožef Stefan International Postgraduate School) ; Petek, Marko (National Institute of Biology. Department of Biotechnology and Systems Biology) ; Lukan, Tjaša (National Institute of Biology. Department of Biotechnology and Systems Biology) ; Pogačar, Karmen (National Institute of Biology. Department of Biotechnology and Systems Biology) ; Stare, Katja (National Institute of Biology. Department of Biotechnology and Systems Biology) ; Prates, Erica Teixeira (Oak Ridge National Laboratory. Biosciences Division) ; Jacobson, Daniel (Oak Ridge National Laboratory. Biosciences Division) ; Zrimec, Jan (National Institute of Biology. Department of Biotechnology and Systems Biology) ; Bajc, Gregor (University of Ljubljana. Department of Biology) ; Butala, Matej (University of Ljubljana. Department of Biology) ; Novak, Maruša Pompe (University of Nova Gorica. School for Viticulture and Enology) ; Dudley, Quentin (Earlham Institute) ; Patron, Nicola J. (Earlham Institute) ; Taler-Verčič, Ajda (University of Ljubljana. Institute of Biochemistry and Molecular Genetics) ; Usenik, Aleksandra (Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins) ; Turk, Dusan (Jožef Stefan Institute. Department of Biochemistry and Molecular and Structural Biology) ; Prat, Salomé (Centre de Recerca en Agrigenòmica) ; Coll, Anna (National Institute of Biology. Department of Biotechnology and Systems Biology) ; Gruden, Kristina (National Institute of Biology. Department of Biotechnology and Systems Biology)
    TGA (TGACG-binding) transcription factors, which bind their target DNA through a conserved basic region leucine zipper (bZIP) domain, are vital regulators of gene expression in salicylic acid (SA)-mediated plant immunity. [...]
    2023 - 10.1093/plphys/kiac579
    Plant physiology, Vol. 191 Issue 3 (March 2023) , p. 1934-1952  
    8 p, 3.4 MB Comparative QTL analysis in peach 'Earlygold' F2 and backcross progenies / Kalluri, Naveen (Centre de Recerca en Agrigenòmica) ; Eduardo, Iban (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
    Based on detailed maps, DNA sequences and phenotypic data, there is a great deal of information on the genetics and genomics of 'Earlygold', a historical peach cultivar from the US. The F between 'Texas' almond and 'Earlygold' peach (T × E) was used to construct the first saturated peach linkage map that later became the reference map for the Prunus genus. [...]
    2022 - 10.1016/j.scienta.2021.110726
    Scientia Horticulturae, Vol. 293 (February 2022) , art. 110726  
    7 p, 1.6 MB Crop archaeogenomics : A powerful resource in need of a well-defined regulation framework / Iob, Alice (Centre de Recerca en Agrigenòmica) ; Botigué, Laura (Centre de Recerca en Agrigenòmica)
    Societal Impact Statement: Crop archaeogenomics has rapidly flourished in recent years, leading to a new way of understanding the past and bringing answers to important questions about human history in relation to plant management and food production. [...]
    2022 - 10.1002/ppp3.10233
    Plants People Planet, Vol. 4, Issue 1 (January 2022) , p. 44-50  
    16 p, 1.5 MB Development and carotenoid synthesis in dark-grown carrot taproots require PHYTOCHROME RAPIDLY REGULATED1 / Arias, Daniela (Universidad de Chile. Centro de Biología Molecular Vegetal) ; Ortega, Angélica (Universidad de Chile. Centro de Biología Molecular Vegetal) ; González-Calquin, Christian (Universidad de Chile. Centro de Biología Molecular Vegetal) ; Quiroz Iturra, Luis Felipe (Universidad de Chile. Centro de Biología Molecular Vegetal) ; Moreno Romero, Jordi (Centre de Recerca en Agrigenòmica) ; Martínez García, Jaime F. (Centre de Recerca en Agrigenòmica) ; Stange, Claudia (Universidad de Chile. Centro de Biología Molecular Vegetal)
    Light stimulates carotenoid synthesis in plants during photomorphogenesis through the expression of PHYTOENE SYNTHASE (PSY), a key gene in carotenoid biosynthesis. The orange carrot (Daucus carota) synthesizes and accumulates high amounts of carotenoids in the taproot that grows underground. [...]
    2022 - 10.1093/plphys/kiac097
    Plant physiology, Vol. 189, Issue 3 (July 2022) , p. 1450-1465  
    20 p, 3.0 MB Protein and antibody purification followed by immunoprecipitation of MYB and GATA zinc finger-type maize proteins with magnetic beads / Vélez-Bermúdez, Isabel Cristina (Academia Sinica (Taiwan). Institute of Plant and Microbial Biology) ; Salazar-Henao, Jorge Enrique (Academia Sinica (Taiwan). Institute of Plant and Microbial Biology) ; Riera, Marta (Centre de Recerca en Agrigenòmica) ; Caparros Ruíz, David (Centre de Recerca en Agrigenòmica) ; Schmidt, Wolfgang (National Taiwan University. College of Life Science)
    Co-immunoprecipitation (Co-IP) is a widely used and powerful approach for studying protein-protein interactions in vivo. Here, we describe a protocol for antibody purification and immobilization followed by immunoprecipitation from plant tissue extracts using magnetic beads. [...]
    2022 - 10.1016/j.xpro.2022.101449
    STAR Protocols, Vol. 3, Issue 2 (June 2022) , art. 101449  
    2 p, 530.8 KB ICTV Virus Taxonomy Profile : Potyviridae 2022 / Inoue-Nagata, Alice K. (Embrapa Vegetables) ; Jordan, Ramon (U.S. Department of Agriculture (USDA)) ; Kreuze, Jan (International Potato Center (CIP)) ; Li, Fan (Yunnan Agricultural University) ; Lopez-Moya, Juan Jose (Centre de Recerca en Agrigenòmica) ; Mäkinen, Kristiina (University of Helsinki) ; Ohshima, Kazusato (Saga University) ; Wylie, Stephen (Murdoch University) ; ICTV Report Consortium
    The family Potyviridae includes plant viruses with single-stranded, positive-sense RNA genomes of 8-11 kb and flexuous filamentous particles 650-950 nm long and 11-20 nm wide. Genera in the family are distinguished by the host range, genomic features and phylogeny of the member viruses. [...]
    2022 - 10.1099/jgv.0.001738
    The Journal of general virology, Vol. 103, Issue 5 (May 2022)  
    13 p, 3.1 MB BRAVO self-confined expression through WOX5 in the Arabidopsis root stem-cell niche / Mercadal Melià, Josep (Universitat de Barcelona. Departament de Física de la Matèria Condensada) ; Betegon Putze, Isabel (Centre de Recerca en Agrigenòmica) ; Bosch, Nadja (Centre de Recerca en Agrigenòmica) ; Caño Delgado, Ana I (Centre de Recerca en Agrigenòmica) ; Ibañes, Marta (Universitat de Barcelona. Institute of Complex Systems)
    In animals and plants, stem-cell niches are local microenvironments that are tightly regulated to preserve their unique identity while communicating with adjacent cells that will give rise to specialized cell types. [...]
    2022 - 10.1242/dev.200510
    Development (Cambridge), Vol. 149, Issue 15 (August 2022) , art. dev200510