2024-07-12
03:54 |
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2024-07-12
03:54 |
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21 p, 3.0 MB |
Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition
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Tremblay, Benjamin Jean-Marie (Centre de Recerca en Agrigenòmica) ;
Santini, Cristina P. (Centre de Recerca en Agrigenòmica) ;
Cheng, Yajiao (Centre de Recerca en Agrigenòmica) ;
Zhang, Xue (Swedish University of Agricultural Sciences. Plant Biology Department) ;
Rosa, Stefanie (Swedish University of Agricultural Sciences. Plant Biology Department) ;
Qüesta, Julia I. (Centre de Recerca en Agrigenòmica)
Translation of seed stored mRNAs is essential to trigger germination. However, when RNAPII re-engages RNA synthesis during the seed-to-seedling transition has remained in question. Combining csRNA-seq, ATAC-seq and smFISH in Arabidopsis thaliana we demonstrate that active transcription initiation is detectable during the entire germination process. [...]
2024 -  10.1038/s41467-024-46082-5
Nature communications, Vol. 15 (February 2024) , art. 1724
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2024-07-12
03:54 |
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3 p, 1.3 MB |
OASIS portable : User-friendly offline suite for secure survival analysis
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Han, Seong Kyu (Boston Children's Hospital) ;
Kwon, Hyunwoo C. (Korea Advanced Institute of Science and Technology. Department of Life Sciences) ;
Yang, Jae-Seong (Centre de Recerca en Agrigenòmica) ;
Kim, Sanguk (Pohang University of Science and Technology. Department of Life Sciences) ;
Lee, Seung-Jae V. (Korea Advanced Institute of Science and Technology. Department of Life Sciences)
Online application for survival analysis (OASIS) and its update, OASIS 2, have been widely used for survival analysis in biological and medical sciences. Here, we provide a portable version of OASIS, an all-in-one offline suite, to facilitate secure survival analysis without uploading the data to online servers. [...]
2024 - 10.1016/j.mocell.2024.100011
Molecules and Cells, Vol. 47, Issue 2 (February 2024) , art. 100011
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2024-07-12
03:54 |
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13 p, 1.3 MB |
Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
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García-Romeral, Julia (Instituto Valenciano de Investigaciones Agrarias) ;
Castanera, Raúl (Centre de Recerca en Agrigenòmica) ;
Casacuberta, Josep (Centre de Recerca en Agrigenòmica) ;
Domingo, Concha (Instituto Valenciano de Investigaciones Agrarias)
Allelopathy has been considered as a natural method of weed control. Despite the nature of allelochemical compounds has been studied, little is known about the genetic basis underlying allelopathy. However, it is known that rice exhibits diverse allelopathic potentials across varieties, and breeding for rice plants exhibiting allelopathic potential conferring an advantage against weeds in paddy fields would be highly desirable. [...]
2024 - 10.1186/s12284-024-00701-3
Rice, Vol. 17 (March 2024) , art. 22
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2024-07-12
03:54 |
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10 p, 2.2 MB |
Population structure and identification of genomic regions associated with productive traits in five Italian beef cattle breeds
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Colombi, Daniele (University of Perugia. Department of Agricultural, Food and Environmental Sciences) ;
Rovelli, Giacomo (Centre de Recerca en Agrigenòmica) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Ceccobelli, Simone (Università Politecnica delle Marche. Department of Agricultural, Food and Environmental Sciences) ;
Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Perini, Francesco (University of Padova. Department of Agronomy, Food, Natural Resources, Animals and Environment) ;
Sbarra, Fiorella (National Association of Italian Beef-Cattle Breeders) ;
Quaglia, Andrea (National Association of Italian Beef-Cattle Breeders) ;
Sarti, Francesca Maria (University of Perugia. Department of Agricultural, Food and Environmental Sciences) ;
Pasquini, Marina (Università Politecnica delle Marche. Department of Agricultural, Food and Environmental Sciences) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Lasagna, Emiliano (University of Perugia. Department of Agricultural, Food and Environmental Sciences)
Italy has a long history in beef production, with local breeds such as Marchigiana, Chianina, Romagnola, Maremmana, and Podolica which produce high-quality meat. Selection has improved meat production, precocity, growth ability and muscle development, but the genetic determinism of such traits is mostly unknown. [...]
2024 - 10.1038/s41598-024-59269-z
Scientific reports, Vol. 14 (April 2024) , art. 8529
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2024-07-12
03:54 |
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12 p, 1.6 MB |
PIF transcriptional regulators are required for rhythmic stomatal movements
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Rovira, Arnau (Centre de Recerca en Agrigenòmica) ;
Veciana, Nil (Centre de Recerca en Agrigenòmica) ;
Basté-Miquel, Aina (Centre de Recerca en Agrigenòmica) ;
Quevedo, Martí (Centre de Recerca en Agrigenòmica) ;
Locascio, Antonella (Universidad CEU Cardenal Herrera. Department of biomedical science) ;
Yenush, Lynne (Universitat Politècnica de València) ;
Toledo-Ortiz, Gabriela (James Hutton Institute) ;
Leivar, Pablo (Universitat Ramon Llull) ;
Monte Collado, Elena (Centre de Recerca en Agrigenòmica)
Stomata govern the gaseous exchange between the leaf and the external atmosphere, and their function is essential for photosynthesis and the global carbon and oxygen cycles. Rhythmic stomata movements in daily dark/light cycles prevent water loss at night and allow CO uptake during the day. [...]
2024 - 10.1038/s41467-024-48669-4
Nature communications, Vol. 15 (May 2024) , art. 4540
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2024-06-11
11:33 |
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5 p, 947.3 KB |
Short communication : Comparing the microbiota diversity from the core, middle part and rind of six Spanish commercial goat cheeses
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries) ;
Guan, Dailu (University of California Davis. Department of Animal Science) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
The cheese core has a lower oxygen saturation and salinity and a higher acidity than the rind, but there is controversy about the incidence of such factors on the magnitude of microbial diversity. The goal of the current work was to investigate the existence of differences in α-diversity between the core, middle part, and rind of six Spanish commercial cheeses through a sequencing approach. [...]
2024 - 10.1016/j.livsci.2024.105496
Livestock science, Vol. 285 (July 2024) , art. 105496
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2024-06-05
05:53 |
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12 p, 3.0 MB |
Identification of genomic regions, genetic variants and gene networks regulating candidate genes for lipid metabolism in pig muscle
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Passols, Magí (Centre de Recerca en Agrigenòmica) ;
Llobet-Cabau, F. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Sebastià, Cristina (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Valdés-Hernández, Jesús (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Criado Mesas, Lourdes (Centre de Recerca en Agrigenòmica) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Folch, Josep M. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
The intramuscular fat content and fatty acid composition of porcine meat have a significant impact on its quality and nutritional value. This research aimed to investigate the expression of 45 genes involved in lipid metabolism in the longissimus dorsi muscle of three experimental pig backcrosses, with a 25% of Iberian background. [...]
2023 - 10.1016/j.animal.2023.101033
Animal, Vol. 17 Núm. 12 (2023) , p. 101033
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2024-05-14
04:01 |
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2024-03-07
10:45 |
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8 p, 1.2 MB |
Single and longitudinal genome-wide association studies for dairy traits available in goats with three recorded lactations
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Martínez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Macri, Martina (Universidad de Córdoba. Departamento de Genética) ;
Delgado, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Fernández Alvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Milk yield and composition phenotypes are systematically recorded across several lactations in goats, but the majority of genome-wide association studies (GWAS) performed so far have rather ignored the longitudinal nature of such data. [...]
2024 - 10.1111/age.13391
Animal Genetics, Vol. 55, Núm. 2 (April 2024) , p. 257-264
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