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1.
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34 p, 19.3 MB |
A compendium of genetic regulatory effects across pig tissues
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Teng, Jinyan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Gao, Yahui (University of Maryland. Department of Animal and Avian Sciences) ;
Yin, Hongwei (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Bai, Zhonghao (The University of Edinburgh) ;
Liu, Shuli (Westlake University) ;
Zeng, Haonan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Bai, Lijing (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Cai, Zexi (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Zhao, Bingru (China Agricultural University) ;
Li, Xiujin (Zhongkai University of Agriculture and Engineering) ;
Xu, Zhiting (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Lin, Qing (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Pan, Zhangyuan (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ;
Yang, Wenjing (University of California, Davis. Department of Animal Science) ;
Yu, Xiaoshan (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer) ;
Guan, Dailu (University of California. Department of Animal Science) ;
Hou, Yali (Chinese Academy of Sciences and China National Center for Bioinformation) ;
Keel, Brittney N. (U.S. Meat Animal Research Center) ;
Rohrer, Gary A. (U.S. Meat Animal Research Center) ;
Lindholm-Perry, Amanda K. (U.S. Meat Animal Research Center) ;
Oliver, William T. (U.S. Meat Animal Research Center) ;
Ballester Devis, Maria (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Crespo-Piazuelo, Daniel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Quintanilla, Raquel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Canela-Xandri, Oriol (University of Edinburgh) ;
Rawlik, Konrad (University of Edinburgh. Baillie Gifford Pandemic Science Hub) ;
Xia, Charley (University of Edinburgh. Department of Psychology) ;
Yao, Yuelin (University of Edinburgh) ;
Zhao, Qianyi (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Yao, Wenye (Wageningen University and Research) ;
Yang, Liu (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Li, Houcheng (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Zhang, Huicong (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Liao, Wang (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ;
Chen, Tianshuo (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ;
Karlskov-Mortensen, Peter (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Consejo Superior de Investigaciones Científicas) ;
Giuffra, Elisabetta (Paris-Saclay University) ;
Wu, Jun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Cai, Xiaodian (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Diao, Shuqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Pan, Xiangchun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Wei, Chen (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Li, Jinghui (University of California, Davis. Department of Animal Science) ;
Cheng, Hao (University of California, Davis. Department of Animal Science) ;
Wang, Sheng (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Su, Guosheng (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Sahana, Goutam (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Lund, Mogens Sandø (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Dekkers, Jack C. M. (Iowa State University. Department of Animal Science) ;
Kramer, Luke (Iowa State University. Department of Animal Science) ;
Tuggle, Christopher K. (Iowa State University. Department of Animal Science) ;
Corbett, Ryan (Iowa State University. Department of Animal Science) ;
Groenen, Martien A. M. (Wageningen University and Research. Animal Breeding and Genomics) ;
Madsen, Ole (Wageningen University and Research. Animal Breeding and Genomics) ;
Gòdia, Marta (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Rocha, Dominique (Paris-Saclay University) ;
Charles, Mathieu (Paris-Saclay University) ;
Li, Cong-jun (Henry A. Wallace Beltsville Agricultural Research Center) ;
Pausch, Hubert (Animal Genomics) ;
Hu, Xiaoxiang (China Agricultural University. State Key Laboratory of Agrobiotechnology) ;
Frantz, Laurent (Queen Mary University of London. School of Biological and Behavioural Sciences) ;
Luo, Yonglun (Qingdao-Europe Advanced Institute for Life Sciences. Lars Bolund Institute of Regenerative Medicine) ;
Lin, Lin (Aarhus University Hospital. Steno Diabetes Center Aarhus) ;
Zhou, Zhongyin (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Zhang, Zhe (Zhejiang University. Department of Animal Science) ;
Chen, Zitao (Zhejiang University. Department of Animal Science) ;
Cui, Leilei (University College London. UCL Genetics Institute) ;
Xiang, Ruidong (Centre for AgriBiosciences) ;
Shen, Xia (University of Edinburgh. Centre for Global Health Research) ;
Li, Pinghua (Nanjing Agricultural University. Institute of Swine Science) ;
Huang, Ruihua (Nanjing Agricultural University. Institute of Swine Science) ;
Tang, Guoqing (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ;
Li, Mingzhou (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ;
Zhao, Yunxiang (Guangxi University. College of Animal Science and Technology) ;
Yi, Guoqiang (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Tang, Zhonglin (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Jiang, Jicai (North Carolina State University. Department of Animal Science) ;
Zhao, Fuping (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ;
Yuan, Xiaolong (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Liu, Xiaohong (Sun Yat-sen University. State Key Laboratory of Biocontrol) ;
Chen, Yaosheng (Sun Yat-sen University. State Key Laboratory of Biocontrol) ;
Xu, Xuewen (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ;
Zhao, Shuhong (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ;
Zhao, Pengju (Hainan Institute, Zhejiang University) ;
Haley, Chris (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Zhou, Huaijun (University of California. Department of Animal Science) ;
Wang, Qishan (Zhejiang University. Department of Animal Science) ;
Pan, Yuchun (Zhejiang University. Department of Animal Science) ;
Ding, Xiangdong (China Agricultural University. College of Animal Science and Technology) ;
Ma, Li (University of Maryland. Department of Animal and Avian Sciences) ;
Li, Jiaqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Navarro, Pau (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Zhang, Qin (Shandong Agricultural University. College of Animal Science and Technology) ;
Li, Bingjie (Scotland's Rural College. Roslin Institute Building) ;
Tenesa, Albert (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Li, Kui (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Liu, George E. (U.S. Department of Agriculture) ;
Zhang, Zhe (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Fang, Lingzhao (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer)
The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been established to develop a public resource of genetic regulatory variants in livestock, which is essential for linking genetic polymorphisms to variation in phenotypes, helping fundamental biological discovery and exploitation in animal breeding and human biomedicine. [...]
2024 -  10.1038/s41588-023-01585-7
Nature genetics, Vol. 56 (january 2024) , p. 112-123
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2.
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8 p, 1.2 MB |
Single and longitudinal genome-wide association studies for dairy traits available in goats with three recorded lactations
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Martínez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Macri, Martina (Universidad de Córdoba. Departamento de Genética) ;
Delgado, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Fernández Alvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Milk yield and composition phenotypes are systematically recorded across several lactations in goats, but the majority of genome-wide association studies (GWAS) performed so far have rather ignored the longitudinal nature of such data. [...]
2024 - 10.1111/age.13391
Animal Genetics, Vol. 55, Núm. 2 (April 2024) , p. 257-264
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3.
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16 p, 2.1 MB |
A protein-coding gene expression atlas from the brain of pregnant and non-pregnant goats
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
López Béjar, Manel (Universitat Autònoma de Barcelona. Departament de Sanitat i d'Anatomia Animals) ;
Casas Díaz, Encarna (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Olvera-Maneu, Sergi (Universitat Autònoma de Barcelona. Departament de Sanitat i d'Anatomia Animals) ;
Gardela Santacruz, Jaume (Universitat Autònoma de Barcelona. Departament de Sanitat i d'Anatomia Animals) ;
Palomo Peiró, María Jesús (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Osuagwuh, Uchebuchi Ike (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Ohaneje, Uchechi Linda (Universitat Autònoma de Barcelona. Departament de Medicina i Cirurgia Animals) ;
Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Background: The brain is an extraordinarily complex organ with multiple anatomical structures involved in highly specialized functions related with behavior and physiological homeostasis. Our goal was to build an atlas of protein-coding gene expression in the goat brain by sequencing the transcriptomes of 12 brain regions in seven female Murciano-Granadina goats, from which three of them were 1-month pregnant. [...]
2023 - 10.3389/fgene.2023.1114749
Frontiers in genetics, Vol. 14 (july 2023)
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4.
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9 p, 334.7 KB |
Identification of three single nucleotide polymorphisms in the chicken insulin-like growth factor 1 and 2 genes and their associations with growth and feeding traits
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Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jiménez, Neus (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Villalba, Daniel (Universitat de Lleida. Departament de Producció Animal) ;
Tor, Marc (Universitat de Lleida. Departament de Producció Animal) ;
Molina Ureste, Ester (Universitat de Lleida. Departament de Producció Animal) ;
Cubiló, Dolors (Universitat de Lleida. Departament de Producció Animal) ;
Marcos, C. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Francesch, Amadeu (Centre Mas Bové. Unitat de Genètica Avícola) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Estany, Joan (Universitat de Lleida. Departament de Producció Animal)
The chicken insulin-like growth factor (IGF)1 and IGF2 genes have been partially sequenced in six individuals of each of two chicken strains of the Black Penedesenca breed (PN and MN). These two strains are genetically diverse for growth traits. [...]
2003 - 10.1093/ps/82.10.1485
Poultry Science, Vol. 82 Núm. 10 (october 2003) , p. 1485-1493
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5.
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46 p, 1.5 MB |
Modeling microRNA-driven post-transcriptional regulation using exon-intron split analysis in pigs
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Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Cirera, Susanna (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Zingaretti, Laura M. (Universidad Nacional de Villa María) ;
Jacobsen, Mette Juul (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries) ;
Jørgensen, Claus B. (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Cardoso, Tainã Figueiredo (Institut de Recerca i Tecnologia Agroalimentàries) ;
Quintanilla, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
The contribution of microRNAs (miRNAs) to mRNA post-transcriptional regulation has often been explored by the post hoc selection of downregulated genes and determining whether they harbor binding sites for miRNAs of interest. [...]
2022 - 10.1111/age.13238
Animal Genetics, Vol. 53, Issue 5 (October 2022) , p. 613-626
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6.
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17 p, 2.4 MB |
Evolution of inbreeding : a gaze into five Italian beef cattle breeds history
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Rovelli, Giacomo (Centre de Recerca en Agrigenòmica) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Sbarra, Fiorella (National Association of Italian Beef-Cattle Breeders) ;
Quaglia, Andrea (National Association of Italian Beef-Cattle Breeders) ;
Sarti, Francesca Maria (University of Perugia. Department of Agricultural, Food and Environmental Sciences) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Lasagna, Emiliano (University of Perugia. Department of Agricultural, Food and Environmental Sciences)
In the last decades, intensive selection programs have led to sustained increases of inbreeding in dairy cattle, a feature that might have adverse consequences on the viability and phenotypic performance of their offspring. [...]
2021 - 10.7717/peerj.12049
PeerJ, Vol. 9 (september 2021)
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7.
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17 p, 1.5 MB |
Assessing the levels of intraspecific admixture and interspecific hybridization in Iberian wild goats (Capra pyrenaica)
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Cardoso, Tainã Figueiredo (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Luigi Sierra, Maria Gracia (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Cabrera Pane, Betlem (Centre de Recerca en Agrigenòmica) ;
Noce, Antonia (Leibniz-Institute for Farm Animal Biology) ;
Mármol-Sánchez, Emilio (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
García-González, Ricardo (Instituto Pirenaico de Ecología) ;
Fernández-Arias, Alberto (Gobierno de Aragón) ;
Alabart, José Luis (Gobierno de Aragón) ;
López Olvera, Jorge R (Universitat Autònoma de Barcelona. Servei d'Ecopatologia de Fauna Salvatge) ;
Mentaberre García, Gregorio (Universitat de Lleida. Departament de Ciència Animal) ;
Granados Torres, José Enrique (Espacio Natural Sierra Nevada) ;
Cardells-Peris, Jesús (Universidad CEU Cardenal Herrera) ;
Molina, Antonio (Universidad de Córdoba) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Iberian wild goats (Capra pyrenaica, also known as Iberian ibex, Spanish ibex, and Spanish wild goat) underwent strong genetic bottlenecks during the 19 th and 20 th centuries due to overhunting and habitat destruction. [...]
2021 - 10.1111/eva.13299
Evolutionary applications, Vol. 14 (september 2021) , p. 2618-2634
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8.
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26 p, 12.8 MB |
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci
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Lv, Feng-Hua (China Agricultural University. College of Animal Science and Technology) ;
Cao, Yin-Hong (University of Chinese Academy of Sciences . College of Life Sciences) ;
Liu, Guang-Jian (Novogene Bioinformatics Institute) ;
Luo, Ling-Yun (China Agricultural University. College of Animal Science and Technology) ;
Lu, Ran (China Agricultural University. College of Animal Science and Technology) ;
Liu, Ming-Jun (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center) ;
Li, Wen-Rong (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center) ;
Zhou, Ping (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Wang, Xin-Hua (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Shen, Min (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Gao, Lei (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Jing-Quan (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Hua (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Yong-Lin (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Liu, Chang-Bin (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Wan, Peng-Cheng (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Zhang, Yun-Sheng (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Pi, Wen-Hui (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Ren, Yan-Ling (Shandong Binzhou Academy of Animal Science and Veterinary Medicine) ;
Shen, Zhi-Qiang (Shandong Binzhou Academy of Animal Science and Veterinary Medicine) ;
Wang, Feng (Nanjing Agricultural University. Institute of Sheep and Goat Science) ;
Wang, Yu-Tao (Kashi University. College of Life and Geographic Sciences) ;
Li, Jin-Quan (Inner Mongolia Agricultural University. College of Animal Science) ;
Salehian-Dehkordi, Hosein (University of Chinese Academy of Sciences. College of Life Sciences) ;
Hehua, Eer (Ningxia Academy of Agriculture and Forestry Sciences. Grass-Feeding Livestock Engineering Technology Research Center) ;
Liu, Yong-Gang (Yunnan Agricultural University. College of Animal Science and Technology) ;
Chen, Jian-Fei (China Agricultural University. College of Animal Science and Technology) ;
Wang, Jian-Kui (China Agricultural University. College of Animal Science and Technology) ;
Deng, Xue-Mei (China Agricultural University. College of Animal Science and Technology) ;
Esmailizadeh, Ali (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Dehghani-Qanatqestani, Mostafa (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Charati, Hadi (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Nosrati, Maryam (Payame Noor University. Department of Agriculture) ;
Štěpánek, Ondřej (State Veterinary Institute Jihlava. Department of Virology) ;
Rushdi, Hossam E (Cairo University. Department of Animal Production) ;
Olsaker, Ingrid (Norwegian University of Life Sciences. Department of Preclinical Sciences and Pathology) ;
Curik, Ino (University of Zagreb. Department of Animal Science) ;
Gorkhali, Neena A (Nepal Agriculture Research Council. Animal Breeding Division, National Animal Science Institute) ;
Paiva, Samuel R (Embrapa Recursos Genéticos e Biotecnologia) ;
Caetano, Alexandre R (Embrapa Recursos Genéticos e Biotecnologia) ;
Ciani, Elena (Università degli Studi di Bari. Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Weimann, Christina (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics) ;
Erhardt, Georg (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics) ;
Amane, Agraw (International Livestock Research Institute) ;
Mwacharo, Joram M (The Roslin Institute Building) ;
Han, Jian-Lin (International Livestock Research Institute (Nairobi, Kènia)) ;
Hanotte, Olivier (University of Nottingham. School of Life Sciences) ;
Periasamy, Kathiravan (International Atomic Energy Agency. Animal Production and Health Laboratory) ;
Johansson, Anna M (Swedish University of Agricultural Sciences. Department of Animal Breeding and Genetics) ;
Hallsson, Jón H (Agricultural University of Iceland. Faculty of Natural Resources and Environmental Sciences) ;
Kantanen, Juha (Natural Resources Institute Finland. Production Systems) ;
Coltman, David W (University of Alberta. Department of Biological Sciences) ;
Bruford, Michael W (Cardiff University. Sustainable Places Research Institute) ;
Lenstra, Johannes A (Utrecht University. Faculty of Veterinary Medicine) ;
Li, Meng-Hua (China Agricultural University. College of Animal Science and Technology)
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the backbone of molecular breeding, but their genome landscapes remain understudied. Here, we present a comprehensive genome resource for wild ovine species, landraces and improved breeds of domestic sheep, comprising high-coverage (∼16. [...]
2021 - 10.1093/molbev/msab353
Molecular biology and evolution, Vol. 39 (december 2021)
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9.
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14 p, 2.9 MB |
VarGoats project : a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity
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Denoyelle, Laure (Université de Toulouse) ;
Talouarn, Estelle (Université de Toulouse) ;
Bardou, Philippe (Université de Toulouse) ;
Colli, Licia (Università Cattolica del Sacro Cuore. Dipartimento Di Scienze Animali, Della Nutrizione E Degli Alimenti) ;
Alberti, Adriana (Université Paris-Saclay) ;
Danchin Burge, Coralie (Institut de L'Elevage (Paris)) ;
Del Corvo, Marcello (Università Cattolica del Sacro Cuore. Dipartimento Di Scienze Animali, Della Nutrizione E Degli Alimenti) ;
Engelen, Stefan (Université Paris-Saclay) ;
Orvain, Céline (Université Paris-Saclay) ;
Palhière, Isabelle (Université de Toulouse) ;
Rupp, Rachel (Université de Toulouse) ;
Sarry, Julien (Université de Toulouse) ;
Salavati, Mazdak (University of Edinburgh) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Clark, Emily (University of Edinburgh) ;
Crepaldi, Paola (University of Milan. Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy) ;
Faraut, Thomas (Université de Toulouse) ;
Masiga, Clet Wandui (Tropical Institute of Development Innovations (TRIDI) (Uganda)) ;
Pompanon, François (Université Grenoble Alpes) ;
Rosen, Benjamin D. (USDA-ARS. Animal Genomics and Improvement Laboratory) ;
Stella, Alessandra (Istituto Di Biologia E Biotecnologia Agraria (Milan)) ;
Van Tassell, Curtis (USDA-ARS. Animal Genomics and Improvement Laboratory) ;
Tosser-Klopp, Gwenola (Université de Toulouse)
Since their domestication 10,500 years ago, goat populations with distinctive genetic backgrounds have adapted to a broad variety of environments and breeding conditions. The VarGoats project is an international 1000-genome resequencing program designed to understand the consequences of domestication and breeding on the genetic diversity of domestic goats and to elucidate how speciation and hybridization have modeled the genomes of a set of species representative of the genus Capra. [...]
2021 - 10.1186/s12711-021-00659-6
Genetics, selection, evolution, Vol. 53 (November 2021) , art. 86
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10.
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14 p, 3.2 MB |
Genomic patterns of homozygosity and inbreeding depression in Murciano-Granadina goats
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Fernández, Almudena (INIA. Departamento de Mejora Genética Animal) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Fernández Álvarez, Javier (Universidad de Córdoba. Departamento de Genética) ;
Landi, Vincenzo (University of Bari ''Aldo Moro". Department of Veterinary Medicine) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Saura, María (INIA. Departamento de Mejora Genética Animal) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
Inbreeding depression can adversely affect traits related to fitness, reproduction and productive performance. Although current research suggests that inbreeding levels are generally low in most goat breeds, the impact of inbreeding depression on phenotypes of economic interest has only been investigated in a few studies based on genealogical data. [...]
2022 - 10.1186/s40104-022-00684-5
Journal of animal science and biotechnology, Vol. 13 (March 2022) , art. 35
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